Experiment set2IT038 for Pseudomonas fluorescens FW300-N1B4
LB with Thallium(I) acetate 0.008 mg/ml
Group: stressMedia: LB + Thallium(I) acetate (0.008 mg/ml)
Culturing: pseudo1_N1B4_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Jayashree on 4/23/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 889 D7,D8
Specific Phenotypes
For 5 genes in this experiment
For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N1B4
For stress Thallium(I) acetate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Choline and Betaine Uptake and Betaine Biosynthesis | 3 |
| Aromatic amino acid degradation | 1 |
| Pterin biosynthesis | 1 |
| Serine-glyoxylate cycle | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycine, serine and threonine metabolism
- Phenylalanine metabolism
- Phenylalanine, tyrosine and tryptophan biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-phenylalanine degradation I (aerobic) | 1 | 1 | 1 |
| L-tyrosine biosynthesis IV | 1 | 1 | 1 |
| choline degradation I | 2 | 2 | 1 |
| glycine betaine biosynthesis I (Gram-negative bacteria) | 2 | 2 | 1 |
| glycine betaine biosynthesis II (Gram-positive bacteria) | 2 | 2 | 1 |
| choline-O-sulfate degradation | 3 | 3 | 1 |
| L-phenylalanine degradation V | 3 | 2 | 1 |