Experiment set2IT038 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS05500 -10.2 -7.0 2-isopropylmalate synthase compare
MMP_RS01455 -10.1 -9.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06680 -10.0 -13.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06720 -9.7 -8.6 response regulator transcription factor compare
MMP_RS01175 -9.5 -6.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04615 -9.2 -5.2 PDGLE domain-containing protein compare
MMP_RS06355 -9.1 -4.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03450 -9.0 -4.5 glycine synthesis protein GlyXS (from data) compare
MMP_RS06375 -9.0 -7.0 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06685 -9.0 -13.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06715 -8.8 -21.3 cache domain-containing protein compare
MMP_RS03015 -8.8 -12.0 GTP 3' 8-cyclase MoaA compare
MMP_RS06705 -8.7 -10.3 formate/nitrite transporter family protein compare
MMP_RS04215 -8.6 -12.0 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06700 -8.4 -18.0 hypothetical protein compare
MMP_RS06345 -8.2 -15.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS07845 -8.2 -4.8 LL-diaminopimelate aminotransferase compare
MMP_RS06350 -8.0 -10.0 HesA/MoeB/ThiF family protein compare
MMP_RS05515 -7.8 -8.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS04605 -7.8 -6.8 cobalt ECF transporter T component CbiQ compare
MMP_RS06270 -7.5 -8.9 TIGR00300 family protein compare
MMP_RS07345 -7.5 -5.2 glycine synthesis protein GlyXL (from data) compare
MMP_RS07185 -7.4 -18.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06730 -7.1 -4.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS05930 -7.1 -4.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS03435 -6.7 -3.8 ketol-acid reductoisomerase compare
MMP_RS06400 -6.6 -3.3 4Fe-4S binding protein compare
MMP_RS05845 -6.5 -3.7 tRNA-intron lyase compare
MMP_RS01020 -6.4 -1.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05090 -6.4 -17.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS06340 -6.3 -13.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00750 -6.2 -4.9 fumarate hydratase compare
MMP_RS07730 -6.2 -3.9 pyruvate synthase subunit beta compare
MMP_RS06295 -6.2 -11.3 methanogenesis marker 14 protein compare
MMP_RS03035 -6.1 -6.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07630 -6.0 -2.9 ATP-binding cassette domain-containing protein compare
MMP_RS05085 -6.0 -14.0 AAA family ATPase compare
MMP_RS07380 -6.0 -4.7 transcription elongation factor Spt5 compare
MMP_RS04620 -6.0 -17.5 cobalt transporter CbiM compare
MMP_RS01985 -6.0 -6.2 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS05425 -5.8 -8.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS04710 -5.7 -3.9 hypothetical protein compare
MMP_RS07580 -5.7 -5.5 DUF356 domain-containing protein compare
MMP_RS05280 -5.7 -15.4 COG1361 S-layer family protein compare
MMP_RS05100 -5.6 -27.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS08460 -5.6 -5.3 proteasome-activating nucleotidase compare
MMP_RS04685 -5.5 -5.9 DUF126 domain-containing protein compare
MMP_RS05095 -5.5 -13.4 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS07005 -5.5 -1.6 4Fe-4S binding protein compare
MMP_RS07605 -5.5 -8.2 diadenylate cyclase compare
MMP_RS08715 -5.5 -3.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS00685 -5.4 -9.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07445 -5.4 -6.1 helix-turn-helix domain-containing protein compare
MMP_RS04585 -5.4 -12.3 AIR synthase related protein compare
MMP_RS05075 -5.4 -23.4 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS02340 -5.3 -4.3 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06895 -5.2 -4.2 selenocysteine-specific translation elongation factor compare
MMP_RS06625 -5.2 -4.1 DNA primase compare
MMP_RS08635 -5.2 -3.6 UbiA family prenyltransferase compare
MMP_RS05080 -5.2 -18.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS03315 -5.2 -2.5 ferrous iron transport protein A compare
MMP_RS00305 -5.2 -4.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS05265 -5.1 -3.5 2-isopropylmalate synthase compare
MMP_RS08790 -5.1 -5.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS04780 -5.1 -6.0 ribonuclease P compare
MMP_RS09020 -5.1 -3.2 hypothetical protein compare
MMP_RS05555 -5.0 -2.1 DUF4040 domain-containing protein compare
MMP_RS07365 -5.0 -14.8 2-phosphoglycerate kinase compare
MMP_RS05060 -5.0 -21.3 AAA family ATPase compare
MMP_RS01755 -4.9 -2.8 DUF2097 domain-containing protein compare
MMP_RS08720 -4.9 -3.7 4Fe-4S binding protein compare
MMP_RS08745 -4.8 -9.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS02280 -4.7 -1.9 DUF211 domain-containing protein compare
MMP_RS05285 -4.7 -10.2 MMPL family transporter compare
MMP_RS01500 -4.7 -5.6 CBS domain-containing protein compare
MMP_RS06230 -4.7 -5.7 helix-turn-helix domain-containing protein compare
MMP_RS04775 -4.7 -5.4 adenosylhomocysteinase compare
MMP_RS07635 -4.7 -9.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06315 -4.6 -1.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08820 -4.6 -8.9 hypothetical protein compare
MMP_RS08210 -4.6 -4.2 phosphatidylglycerophosphatase A compare
MMP_RS07545 -4.6 -1.9 HTH domain-containing protein compare
MMP_RS02195 -4.5 -7.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS05055 -4.5 -22.2 DUF166 domain-containing protein compare
MMP_RS00300 -4.5 -1.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS02010 -4.5 -11.0 PHP domain-containing protein compare
MMP_RS05070 -4.4 -6.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS01610 -4.4 -5.8 hypothetical protein compare
MMP_RS01325 -4.4 -4.6 dihydroneopterin aldolase family protein compare
MMP_RS00515 -4.4 -1.8 DUF655 domain-containing protein compare
MMP_RS02345 -4.3 -6.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06020 -4.3 -7.6 archaeoflavoprotein AfpA compare
MMP_RS00695 -4.3 -1.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS03025 -4.3 -9.7 molybdenum cofactor guanylyltransferase compare
MMP_RS02355 -4.3 -6.9 30S ribosomal protein S27ae compare
MMP_RS01220 -4.3 -10.9 hypothetical protein compare
MMP_RS04890 -4.3 -1.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS00295 -4.2 -5.2 gamma carbonic anhydrase family protein compare
MMP_RS03640 -4.2 -7.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03580 -4.2 -5.8 signal recognition particle-docking protein FtsY compare
MMP_RS01265 -4.1 -3.1 hypothetical protein compare
MMP_RS00895 -4.1 -8.5 hypothetical protein compare
MMP_RS01225 -4.1 -7.6 DUF5379 domain-containing protein compare
MMP_RS03600 -4.1 -5.9 triose-phosphate isomerase compare
MMP_RS06120 -4.0 -3.4 UPF0147 family protein compare
MMP_RS02240 -4.0 -7.9 methanogenesis marker 7 protein compare
MMP_RS03475 -3.9 -1.6 hypothetical protein compare
MMP_RS01005 -3.9 -2.6 riboflavin synthase compare
MMP_RS01800 -3.9 -8.2 TIGR00303 family protein compare
MMP_RS03400 -3.9 -4.2 archease compare
MMP_RS05875 -3.8 -6.2 hydroxyethylthiazole kinase compare
MMP_RS07735 -3.8 -1.5 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS02875 -3.8 -14.8 chorismate pyruvate-lyase family protein compare
MMP_RS01385 -3.7 -1.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01700 -3.7 -2.1 dihydroxy-acid dehydratase compare
MMP_RS03445 -3.6 -2.5 methanogenesis marker 17 protein compare
MMP_RS08435 -3.6 -6.3 Era-like GTP-binding protein compare
MMP_RS06925 -3.6 -4.2 ribonuclease VapC4 compare
MMP_RS06105 -3.6 -12.7 hydrogenase maturation peptidase HycI compare
MMP_RS06630 -3.6 -2.7 UPF0058 family protein compare
MMP_RS05920 -3.5 -1.7 50S ribosomal protein L37e compare
MMP_RS06370 -3.5 -11.5 biotin synthase BioB compare
MMP_RS08240 -3.5 -11.5 methanogenesis marker 16 metalloprotein compare
MMP_RS06475 -3.4 -7.9 FAD-dependent oxidoreductase compare
MMP_RS00110 -3.4 -5.5 hypothetical protein compare
MMP_RS01725 -3.3 -8.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS02135 -3.3 -7.3 DUF5612 domain-containing protein compare
MMP_RS04500 -3.3 -20.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05550 -3.3 -1.6 cation:proton antiporter compare
MMP_RS00115 -3.3 -18.5 radical SAM protein compare
MMP_RS07600 -3.3 -4.7 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08330 -3.3 -5.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS05065 -3.2 -8.0 CooT family nickel-binding protein compare
MMP_RS02900 -3.2 -1.3 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS03390 -3.2 -13.3 malate dehydrogenase compare
MMP_RS06285 -3.1 -4.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07555 -3.1 -1.5 monovalent cation/H+ antiporter subunit E compare
MMP_RS07575 -3.1 -4.9 RNA ligase partner protein compare
MMP_RS01830 -3.0 -2.2 tRNA-Val compare
MMP_RS08320 -3.0 -11.2 molybdopterin molybdotransferase MoeA compare
MMP_RS08095 -3.0 -12.1 dethiobiotin synthase compare
MMP_RS06885 -3.0 -6.4 50S ribosome-binding GTPase compare
MMP_RS05345 -3.0 -8.4 hypothetical protein compare
MMP_RS08650 -2.9 -4.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08300 -2.9 -2.7 metal-sulfur cluster assembly factor compare
MMP_RS03960 -2.9 -2.4 hypothetical protein compare
MMP_RS08100 -2.9 -10.2 8-amino-7-oxononanoate synthase compare
MMP_RS03155 -2.9 -10.1 precorrin-6A reductase compare
MMP_RS01795 -2.8 -3.0 methanogenesis marker 6 protein compare
MMP_RS01545 -2.8 -2.4 CBS domain-containing protein compare
MMP_RS04790 -2.8 -15.7 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS02190 -2.8 -5.3 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS04875 -2.8 -10.4 energy-converting hydrogenase B subunit P compare
MMP_RS07645 -2.8 -11.0 aldehyde dehydrogenase family protein compare
MMP_RS03420 -2.8 -3.8 acetolactate synthase small subunit compare
MMP_RS08105 -2.7 -12.6 6-carboxyhexanoate--CoA ligase compare
MMP_RS07200 -2.7 -8.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05440 -2.7 -13.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS07525 -2.7 -9.1 4Fe-4S binding protein compare
MMP_RS03140 -2.7 -17.2 hypothetical protein compare
MMP_RS05430 -2.7 -5.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS07955 -2.7 -5.5 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS03145 -2.6 -13.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS05505 -2.6 -14.0 class IV adenylate cyclase compare
MMP_RS05850 -2.6 -8.6 Ldh family oxidoreductase compare
MMP_RS00290 -2.6 -7.4 hypothetical protein compare
MMP_RS03700 -2.6 -11.5 sodium:proton antiporter compare
MMP_RS07090 -2.5 -12.3 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06175 -2.5 -12.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS00320 -2.5 -2.9 class I SAM-dependent methyltransferase compare
MMP_RS08760 -2.4 -2.1 hypothetical protein compare
MMP_RS07355 -2.4 -2.2 transcription factor S compare
MMP_RS04090 -2.4 -5.5 hypothetical protein compare
MMP_RS07195 -2.4 -16.0 M20 family metallo-hydrolase compare
MMP_RS05925 -2.4 -5.4 small nuclear ribonucleoprotein compare
MMP_RS08840 -2.4 -13.6 class I SAM-dependent methyltransferase compare
MMP_RS05815 -2.4 -6.2 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00455 -2.3 -11.2 orotate phosphoribosyltransferase-like protein compare
MMP_RS06940 -2.3 -3.4 polyprenyl diphosphate synthase compare
MMP_RS06130 -2.3 -5.1 peptidylprolyl isomerase compare
MMP_RS04870 -2.3 -5.5 TIGR02253 family HAD-type hydrolase compare
MMP_RS02800 -2.2 -7.8 nucleotidyltransferase domain-containing protein compare
MMP_RS01380 -2.2 -4.8 PHP domain-containing protein compare
MMP_RS01475 -2.2 -10.4 phosphosulfolactate synthase compare
MMP_RS00985 -2.1 -7.9 CDC48 family AAA ATPase compare
MMP_RS08165 -2.1 -3.1 phosphoglycerate dehydrogenase compare
MMP_RS05540 -2.1 -2.2 hypothetical protein compare
MMP_RS02170 -2.0 -7.7 CBS domain-containing protein compare
MMP_RS06215 -1.9 -5.9 30S ribosomal protein S6e compare
MMP_RS01365 -1.9 -2.9 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS08645 -1.9 -9.5 UPF0179 family protein compare
MMP_RS08445 -1.9 -5.7 DUF2099 family protein compare
MMP_RS06200 -1.9 -9.5 M24 family metallopeptidase compare
MMP_RS07390 -1.8 -3.0 cell division protein FtsZ compare
MMP_RS03555 -1.8 -9.6 transcriptional regulator compare
MMP_RS03250 -1.8 -3.5 MJ1244 family protein compare
MMP_RS00900 -1.8 -3.5 50S ribosomal protein L39e compare
MMP_RS00810 -1.8 -6.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03095 -1.7 -9.6 diphthine synthase compare
MMP_RS02165 -1.7 -7.7 tRNA-dihydrouridine synthase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms