Experiment set2IT038 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 5g/L bicarb, 40 psi H2CO2

200 most important genes:

  gene name fitness t score description  
MMJJ_RS07360 -5.7 -3.8 TIGR00269 family protein compare
MMJJ_RS02920 -4.6 -3.1 30S ribosomal protein S27ae compare
MMJJ_RS03055 -4.2 -4.2 hypothetical protein compare
MMJJ_RS06750 -4.2 -4.0 homoaconitase large subunit compare
MMJJ_RS01880 -4.1 -3.9 RlmE family RNA methyltransferase compare
MMJJ_RS03895 -4.0 -4.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS03965 -4.0 -3.7 DNA-directed RNA polymerase subunit L compare
MMJJ_RS01600 -3.8 -3.6 radical SAM protein compare
MMJJ_RS04200 -3.7 -8.6 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03200 -3.6 -3.5 uroporphyrinogen-III synthase compare
MMJJ_RS06695 -3.6 -4.8 amidohydrolase compare
MMJJ_RS03125 -3.6 -5.4 GMC oxidoreductase compare
MMJJ_RS01870 -3.6 -3.4 methanogenesis marker 15 protein compare
MMJJ_RS06225 -3.5 -3.4 adenosylmethionine decarboxylase compare
MMJJ_RS08535 -3.5 -4.7 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS00450 -3.5 -3.3 DUF126 domain-containing protein compare
MMJJ_RS07705 -3.4 -3.3 GTP-binding protein EngB compare
MMJJ_RS06600 -3.4 -3.9 DUF555 domain-containing protein compare
MMJJ_RS06040 -3.4 -5.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS05650 -3.3 -3.9 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS06510 -3.2 -4.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS09190 -3.2 -3.1 tryptophan synthase subunit beta compare
MMJJ_RS05995 -3.1 -3.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS03270 -3.1 -3.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05620 -3.1 -4.6 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03005 -3.1 -4.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03230 -3.1 -5.9 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS05535 -3.0 -16.5 hypothetical protein compare
MMJJ_RS04995 -3.0 -6.6 Tfx family DNA-binding protein compare
MMJJ_RS02090 -3.0 -6.8 tyramine--L-glutamate ligase compare
MMJJ_RS01935 -3.0 -5.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS03110 -3.0 -5.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS07455 -2.9 -8.6 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS06490 -2.9 -3.9 methanogenesis marker 2 protein compare
MMJJ_RS03620 -2.9 -5.7 DUF2097 domain-containing protein compare
MMJJ_RS08080 -2.9 -13.4 TIGR00300 family protein compare
MMJJ_RS00355 -2.9 -4.3 ribonuclease P protein component 4 compare
MMJJ_RS03840 -2.9 -4.7 DHH family phosphoesterase compare
MMJJ_RS00270 -2.9 -3.8 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS00560 -2.8 -5.2 homoisocitrate dehydrogenase compare
MMJJ_RS03580 -2.8 -3.7 TIGR00303 family protein compare
MMJJ_RS08625 -2.8 -9.1 magnesium/cobalt transporter CorA compare
MMJJ_RS07720 -2.8 -3.4 UPF0058 family protein compare
MMJJ_RS01755 -2.7 -3.5 ferrous iron transport protein B compare
MMJJ_RS00645 -2.7 -13.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS00125 -2.7 -3.2 KEOPS complex subunit Cgi121 compare
MMJJ_RS03785 -2.7 -3.6 hypothetical protein compare
MMJJ_RS06840 -2.7 -5.0 nickel-dependent hydrogenase large subunit compare
MMJJ_RS02200 -2.7 -11.6 chorismate pyruvate-lyase family protein compare
MMJJ_RS04700 -2.7 -7.9 deoxyhypusine synthase compare
MMJJ_RS07980 -2.7 -12.9 biotin synthase BioB compare
MMJJ_RS04595 -2.6 -5.5 hypothetical protein compare
MMJJ_RS04685 -2.6 -10.7 carbamoyltransferase HypF compare
MMJJ_RS08010 -2.6 -8.2 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06270 -2.6 -9.0 dethiobiotin synthase compare
MMJJ_RS07950 -2.5 -4.2 4Fe-4S binding protein compare
MMJJ_RS05935 -2.5 -3.2 Era-like GTP-binding protein compare
MMJJ_RS06265 -2.5 -15.0 8-amino-7-oxononanoate synthase compare
MMJJ_RS00475 -2.5 -3.5 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS05380 -2.5 -2.3 hypothetical protein compare
MMJJ_RS06805 -2.5 -4.2 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS08660 -2.4 -4.5 acetylornithine transaminase compare
MMJJ_RS05155 -2.4 -7.5 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06260 -2.4 -8.6 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS06255 -2.4 -8.1 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05950 -2.4 -3.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS00275 -2.4 -2.8 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06155 -2.4 -6.8 phosphatidylglycerophosphatase A compare
MMJJ_RS06180 -2.4 -3.8 tryptophan--tRNA ligase compare
MMJJ_RS06110 -2.4 -2.2 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS00600 -2.4 -3.9 hydroxymethylbilane synthase compare
MMJJ_RS07785 -2.3 -3.1 fumarate reductase subunit A compare
MMJJ_RS09135 -2.3 -9.8 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS05490 -2.3 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS08055 -2.3 -7.0 methanogenesis marker 14 protein compare
MMJJ_RS03190 -2.3 -3.9 phosphopyruvate hydratase compare
MMJJ_RS04145 -2.3 -9.1 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS01350 -2.3 -5.1 sodium:proton antiporter compare
MMJJ_RS05575 -2.3 -5.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS07190 -2.2 -4.8 RtcB family protein compare
MMJJ_RS08095 -2.2 -4.7 cobyric acid synthase CobQ compare
MMJJ_RS07725 -2.2 -7.8 DNA primase DnaG compare
MMJJ_RS06240 -2.2 -3.4 dihydropteroate synthase-like protein compare
MMJJ_RS04485 -2.2 -10.6 riboflavin synthase compare
MMJJ_RS07350 -2.2 -4.2 4Fe-4S binding protein compare
MMJJ_RS04155 -2.1 -7.4 hypothetical protein compare
MMJJ_RS03615 -2.1 -2.9 cobalt-precorrin-8 methylmutase compare
MMJJ_RS05655 -2.1 -6.0 HisA/HisF family protein compare
MMJJ_RS07945 -2.1 -3.1 4Fe-4S binding protein compare
MMJJ_RS00205 -2.1 -6.5 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05260 -2.1 -5.9 ATP-grasp domain-containing protein compare
MMJJ_RS04520 -2.1 -6.0 coenzyme F430 synthase compare
MMJJ_RS03170 -2.1 -8.7 DUF5612 domain-containing protein compare
MMJJ_RS08155 -2.1 -3.3 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06220 -2.1 -6.1 polyamine aminopropyltransferase compare
MMJJ_RS08330 -2.1 -3.1 SufD family Fe-S cluster assembly protein compare
MMJJ_RS04475 -2.0 -5.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS03540 -2.0 -8.2 TIGR00289 family protein compare
MMJJ_RS03820 -2.0 -3.9 hydrogenase formation protein HypD compare
MMJJ_RS07470 -2.0 -3.3 50S ribosome-binding GTPase compare
MMJJ_RS04650 -2.0 -4.7 nitrogenase iron protein compare
MMJJ_RS01690 -2.0 -3.8 methanogenesis marker 12 protein compare
MMJJ_RS02045 -2.0 -4.1 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06485 -2.0 -3.5 phosphoglycerate kinase compare
MMJJ_RS06715 -2.0 -11.4 lactaldehyde dehydrogenase compare
MMJJ_RS02275 -2.0 -5.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03095 -2.0 -2.8 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS00370 -2.0 -3.1 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS03670 -1.9 -3.8 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05295 -1.9 -8.1 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS07160 -1.9 -15.6 M20 family metallo-hydrolase compare
MMJJ_RS06910 -1.9 -3.2 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03845 -1.9 -3.5 translation initiation factor IF-2 compare
MMJJ_RS08870 -1.9 -2.2 2-isopropylmalate synthase compare
MMJJ_RS05065 -1.9 -5.3 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00570 -1.9 -2.8 ribonuclease P compare
MMJJ_RS01345 -1.9 -4.0 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS06860 -1.9 -4.6 hypothetical protein compare
MMJJ_RS09375 -1.9 -1.8 hypothetical protein compare
MMJJ_RS06725 -1.9 -10.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS01750 -1.9 -3.5 ferrous iron transport protein A compare
MMJJ_RS07245 -1.8 -4.4 amidohydrolase family protein compare
MMJJ_RS06760 -1.8 -4.7 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS06855 -1.8 -2.2 DUF2104 domain-containing protein compare
MMJJ_RS03875 -1.8 -4.6 CBS domain-containing protein compare
MMJJ_RS04675 -1.8 -6.4 thiamine pyrophosphate-binding protein compare
MMJJ_RS03760 -1.8 -3.3 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06175 -1.8 -2.7 DUF1743 domain-containing protein compare
MMJJ_RS05610 -1.8 -4.7 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS07410 -1.8 -4.0 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS05810 -1.8 -6.0 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS07155 -1.8 -8.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06835 -1.8 -11.6 4Fe-4S binding protein compare
MMJJ_RS02040 -1.8 -2.5 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS05375 -1.8 -11.5 radical SAM protein compare
MMJJ_RS07375 -1.8 -8.7 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS08405 -1.8 -11.0 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04980 -1.7 -3.9 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS04150 -1.7 -3.5 DUF5379 domain-containing protein compare
MMJJ_RS08575 -1.7 -4.7 hypothetical protein compare
MMJJ_RS08020 -1.7 -9.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08000 -1.7 -9.4 HesA/MoeB/ThiF family protein compare
MMJJ_RS06005 -1.7 -8.4 energy conserving hydrogenase EhbF compare
MMJJ_RS05590 -1.7 -1.4 homoserine dehydrogenase compare
MMJJ_RS04790 -1.7 -3.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06015 -1.7 -8.2 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS03225 -1.6 -2.6 4Fe-4S binding protein compare
MMJJ_RS06010 -1.6 -5.8 hypothetical protein compare
MMJJ_RS06020 -1.6 -5.6 hypothetical protein compare
MMJJ_RS07430 -1.6 -2.9 ribonuclease VapC compare
MMJJ_RS06705 -1.6 -4.7 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS08850 -1.6 -2.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS03245 -1.6 -2.6 UMP kinase compare
MMJJ_RS01810 -1.6 -2.3 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06035 -1.6 -7.9 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS08230 -1.6 -4.1 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS05445 -1.6 -2.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06915 -1.6 -10.1 helix-turn-helix domain-containing protein compare
MMJJ_RS04565 -1.6 -2.2 sirohydrochlorin nickelochelatase compare
MMJJ_RS06185 -1.6 -4.0 cobalamin biosynthesis protein compare
MMJJ_RS08925 -1.6 -9.2 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS01860 -1.5 -10.8 tRNA guanosine(15) transglycosylase TgtA compare
MMJJ_RS06250 -1.5 -2.5 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS01415 -1.5 -2.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03660 -1.5 -3.2 DUF447 family protein compare
MMJJ_RS04730 -1.5 -2.0 tyrosine decarboxylase MfnA compare
MMJJ_RS04770 -1.5 -3.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
MMJJ_RS03295 -1.5 -10.5 PHP domain-containing protein compare
MMJJ_RS01875 -1.5 -4.9 global nitrogen regulator NrpR compare
MMJJ_RS08340 -1.5 -3.9 archaeoflavoprotein AfpA compare
MMJJ_RS03115 -1.5 -4.5 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS00425 -1.4 -4.0 hypothetical protein compare
MMJJ_RS03865 -1.4 -2.7 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS04985 -1.4 -1.9 glutamyl-tRNA reductase compare
MMJJ_RS01830 -1.4 -2.4 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS03815 -1.4 -2.7 nascent polypeptide-associated complex protein compare
MMJJ_RS05540 -1.4 -11.9 LysR family transcriptional regulator compare
MMJJ_RS04680 -1.4 -8.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS03060 -1.4 -3.0 methanogenesis marker 7 protein compare
MMJJ_RS06785 -1.4 -5.5 RNA ligase partner protein compare
MMJJ_RS08035 -1.4 -6.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS01915 -1.4 -7.8 precorrin-6A reductase compare
MMJJ_RS03650 -1.4 -5.3 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS01975 -1.4 -8.2 diphthine synthase compare
MMJJ_RS06875 -1.4 -1.7 hypothetical protein compare
MMJJ_RS07345 -1.3 -6.1 homocysteine biosynthesis protein compare
MMJJ_RS08905 -1.3 -9.6 YcaO-related McrA-glycine thioamidation protein compare
MMJJ_RS08620 -1.3 -3.3 DUF373 family protein compare
MMJJ_RS03490 -1.3 -2.4 ribonuclease VapC compare
MMJJ_RS02855 -1.3 -6.7 DEAD/DEAH box helicase compare
MMJJ_RS07015 -1.3 -1.2 PFL family protein compare
MMJJ_RS08650 -1.3 -9.9 TfuA-like protein compare
MMJJ_RS07170 -1.3 -3.6 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS06390 -1.3 -1.5 NADPH-dependent F420 reductase compare
MMJJ_RS04800 -1.3 -3.9 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06700 -1.3 -3.9 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS05720 -1.3 -2.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00580 -1.3 -2.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS00285 -1.3 -8.9 UPF0254 family protein compare
MMJJ_RS07265 -1.2 -8.1 tRNA (adenine-N1)-methyltransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t1 experiments