Experiment set2IT037 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chloride 500 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5014 -5.2 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4162 -4.4 -3.1 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2129 -4.1 -5.6 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2753 -3.4 -5.4 HtrA protease/chaperone protein compare
Pf6N2E2_4803 -3.0 -2.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4369 -2.9 -3.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3351 -2.8 -7.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5150 -2.8 -8.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5508 -2.5 -4.0 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4352 -2.5 -4.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5430 -2.4 -9.1 Transglycosylase, Slt family compare
Pf6N2E2_2756 -2.2 -8.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5001 -2.2 -3.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3661 -2.2 -7.6 hypothetical protein compare
Pf6N2E2_288 -2.0 -3.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_145 -2.0 -7.7 putative exported protein compare
Pf6N2E2_3460 -2.0 -3.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4204 -1.9 -2.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4071 -1.9 -6.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_144 -1.9 -13.2 Uncharacterized protein YtfM precursor compare
Pf6N2E2_1056 -1.9 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4454 -1.8 -7.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3617 -1.8 -6.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2217 -1.8 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2258 -1.8 -9.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5027 -1.8 -12.2 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_3834 -1.8 -7.1 Lipoprotein NlpD compare
Pf6N2E2_2507 -1.7 -6.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4585 -1.7 -11.8 Cell division protein FtsX compare
Pf6N2E2_4353 -1.6 -5.8 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3885 -1.6 -3.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4187 -1.5 -4.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3908 -1.5 -7.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3282 -1.5 -3.3 FIG005080: Possible exported protein compare
Pf6N2E2_3659 -1.5 -4.8 Protein fixF compare
Pf6N2E2_3461 -1.5 -2.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3941 -1.4 -4.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3607 -1.3 -6.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_1870 -1.3 -2.7 hypothetical protein compare
Pf6N2E2_2074 -1.3 -2.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2080 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_2487 -1.3 -1.6 FIG00956090: hypothetical protein compare
Pf6N2E2_4416 -1.3 -2.2 Tyrosine recombinase XerC compare
Pf6N2E2_3060 -1.3 -2.1 Outer membrane protein H precursor compare
Pf6N2E2_2128 -1.3 -3.9 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2219 -1.2 -1.5 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4584 -1.2 -4.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4743 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_5520 -1.2 -5.5 Sensory box histidine kinase compare
Pf6N2E2_2277 -1.2 -2.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5956 -1.2 -4.6 FIG004453: protein YceG like compare
Pf6N2E2_309 -1.2 -1.8 FIG00957702: hypothetical protein compare
Pf6N2E2_5768 -1.2 -3.3 DNA recombination-dependent growth factor C compare
Pf6N2E2_1636 -1.2 -5.4 Ferrichrome-iron receptor compare
Pf6N2E2_4273 -1.2 -6.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_6140 -1.2 -1.4 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2509 -1.1 -2.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4601 -1.1 -3.4 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4638 -1.1 -3.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2278 -1.1 -8.7 Transcription-repair coupling factor compare
Pf6N2E2_2123 -1.1 -3.5 hypothetical protein compare
Pf6N2E2_5406 -1.1 -2.2 FIG00958224: hypothetical protein compare
Pf6N2E2_3062 -1.1 -4.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_953 -1.1 -2.0 FIG00958851: hypothetical protein compare
Pf6N2E2_1676 -1.1 -2.7 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_2586 -1.0 -1.9 Hpt domain protein compare
Pf6N2E2_634 -1.0 -6.3 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_5156 -1.0 -2.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2518 -1.0 -3.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_5342 -1.0 -3.3 21 kDa hemolysin precursor compare
Pf6N2E2_2176 -1.0 -1.6 Amidases related to nicotinamidase compare
Pf6N2E2_2282 -1.0 -3.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4612 -1.0 -4.7 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3770 -1.0 -2.1 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_1299 -1.0 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2323 -1.0 -2.9 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_434 -1.0 -2.8 hypothetical protein compare
Pf6N2E2_4479 -1.0 -2.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_282 -1.0 -1.6 GNAT family acetyltransferase YjcF compare
Pf6N2E2_2503 -1.0 -1.9 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_1545 -1.0 -3.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2755 -0.9 -1.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2218 -0.9 -3.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_595 -0.9 -2.6 Arsenical resistance operon repressor compare
Pf6N2E2_3332 -0.9 -5.3 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_6047 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_1932 -0.9 -3.7 Transcriptional regulator, IclR family compare
Pf6N2E2_1502 -0.9 -1.4 Two-component system regulatory protein compare
Pf6N2E2_3839 -0.9 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3333 -0.9 -5.2 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) conserved
Pf6N2E2_4677 -0.9 -6.5 Choline dehydrogenase (EC 1.1.99.1) compare
Pf6N2E2_3134 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_3349 -0.9 -3.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4579 -0.9 -2.0 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4742 -0.9 -4.0 Glutathione S-transferase family protein compare
Pf6N2E2_3658 -0.9 -4.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2508 -0.9 -2.7 hypothetical protein compare
Pf6N2E2_1441 -0.9 -1.7 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_3917 -0.9 -6.5 High-affinity choline uptake protein BetT conserved
Pf6N2E2_16 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_5647 -0.9 -4.1 Transcriptional regulator, TetR family compare
Pf6N2E2_4077 -0.9 -2.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5170 -0.9 -6.5 FIG00955330: hypothetical protein compare
Pf6N2E2_6065 -0.9 -2.2 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_3074 -0.8 -1.9 FIG00960973: hypothetical protein compare
Pf6N2E2_4418 -0.8 -0.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1014 -0.8 -1.3 Nitrate/nitrite transporter compare
Pf6N2E2_4599 -0.8 -2.5 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_3179 -0.8 -1.9 FIG021952: putative membrane protein compare
Pf6N2E2_3198 -0.8 -1.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4679 -0.8 -4.6 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf6N2E2_5584 -0.8 -2.4 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_2506 -0.8 -6.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_1293 -0.8 -2.2 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_1632 -0.8 -3.4 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_42 -0.8 -2.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4372 -0.8 -3.6 FIG00460773: hypothetical protein compare
Pf6N2E2_3667 -0.8 -1.2 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4205 -0.8 -2.5 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1009 -0.8 -2.0 Inositol transport system permease protein compare
Pf6N2E2_4888 -0.8 -6.6 Excinuclease ABC subunit A compare
Pf6N2E2_5703 -0.8 -3.1 outer membrane protein H1 compare
Pf6N2E2_1560 -0.7 -2.3 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_5843 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_361 -0.7 -2.3 Peptide ABC transporter, permease protein compare
Pf6N2E2_3842 -0.7 -2.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2264 -0.7 -2.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_737 -0.7 -1.2 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_2513 -0.7 -2.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3833 -0.7 -2.6 hypothetical protein compare
Pf6N2E2_2274 -0.7 -2.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_814 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_5671 -0.7 -2.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_1074 -0.7 -1.3 FIG00953356: hypothetical protein compare
Pf6N2E2_1673 -0.7 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_1691 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_2852 -0.7 -4.7 GGDEF domain/EAL domain protein compare
Pf6N2E2_3331 -0.7 -5.2 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation conserved
Pf6N2E2_1492 -0.7 -2.4 No significant database matches compare
Pf6N2E2_5594 -0.7 -4.0 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_5950 -0.7 -2.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_445 -0.7 -3.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3655 -0.7 -5.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_156 -0.7 -1.5 Carbon storage regulator compare
Pf6N2E2_3612 -0.7 -1.8 HflK protein compare
Pf6N2E2_3330 -0.7 -3.6 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_5555 -0.7 -0.8 Cold shock protein CspA compare
Pf6N2E2_2367 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_5756 -0.7 -2.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5567 -0.7 -1.2 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_2693 -0.7 -1.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4399 -0.7 -3.4 GGDEF domain/EAL domain protein compare
Pf6N2E2_2510 -0.7 -2.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5936 -0.7 -0.9 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_199 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_5705 -0.7 -1.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_924 -0.6 -1.5 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_1085 -0.6 -1.1 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_5172 -0.6 -1.7 FOG: TPR repeat compare
Pf6N2E2_5544 -0.6 -4.1 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5807 -0.6 -3.0 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_5664 -0.6 -3.0 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_2018 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_5111 -0.6 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_1340 -0.6 -1.8 major pilin protein fimA compare
Pf6N2E2_2021 -0.6 -3.7 Excinuclease ABC subunit C compare
Pf6N2E2_5759 -0.6 -3.4 DNA recombination protein RmuC compare
Pf6N2E2_2864 -0.6 -1.4 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4797 -0.6 -1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5242 -0.6 -1.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3206 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_200 -0.6 -2.0 Possible glycosyltransferase compare
Pf6N2E2_5536 -0.6 -1.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3240 -0.6 -1.2 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3027 -0.6 -1.1 Baseplate assembly protein V compare
Pf6N2E2_3118 -0.6 -3.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2674 -0.6 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_302 -0.6 -1.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3534 -0.6 -1.2 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2125 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_4120 -0.6 -4.7 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2992 -0.6 -2.8 Regulatory protein RecX compare
Pf6N2E2_4272 -0.6 -2.1 putative membrane protein compare
Pf6N2E2_5766 -0.6 -1.2 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_4305 -0.6 -1.1 FIG00959590: hypothetical protein compare
Pf6N2E2_2794 -0.6 -0.9 putative membrane protein compare
Pf6N2E2_4527 -0.6 -1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_4173 -0.6 -3.1 Methionine ABC transporter permease protein compare
Pf6N2E2_2413 -0.6 -1.1 FIG074102: hypothetical protein compare
Pf6N2E2_1603 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_2447 -0.6 -3.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2073 -0.6 -2.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_342 -0.6 -0.9 DNA-binding response regulator compare
Pf6N2E2_4747 -0.6 -2.2 Transmembrane sensor compare
Pf6N2E2_1762 -0.6 -2.1 putative lipase compare
Pf6N2E2_5738 -0.6 -3.7 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_3300 -0.6 -2.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_50 -0.6 -3.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_423 -0.6 -0.7 Putative phosphatase YfbT compare
Pf6N2E2_3791 -0.6 -4.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium Chloride across organisms