Experiment set2IT037 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chloride 500 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_2934 +1.2 4.4 lipoprotein, putative compare
Pf6N2E2_2181 +1.1 1.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_613 +1.0 2.2 lipoprotein, putative compare
Pf6N2E2_3122 +0.9 1.5 Chemotaxis signal transduction protein compare
Pf6N2E2_5967 +0.8 2.9 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_4624 +0.8 1.6 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_689 +0.8 1.3 FIG00956189: hypothetical protein compare
Pf6N2E2_4987 +0.8 1.2 MaoC-like domain protein compare
Pf6N2E2_469 +0.7 1.4 lipoprotein, putative compare
Pf6N2E2_3477 +0.7 1.3 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3665 +0.7 1.4 serine/threonine protein kinase compare
Pf6N2E2_4541 +0.7 1.6 hypothetical protein compare
Pf6N2E2_3237 +0.7 2.6 hypothetical protein compare
Pf6N2E2_2003 +0.7 1.9 hypothetical protein compare
Pf6N2E2_319 +0.7 1.8 DUF1850 domain-containing protein compare
Pf6N2E2_1022 +0.6 2.1 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_3247 +0.6 3.5 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) compare
Pf6N2E2_570 +0.6 2.0 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf6N2E2_1997 +0.6 2.1 FIG00956406: hypothetical protein compare
Pf6N2E2_2999 +0.6 1.5 probable tail fiber assembly protein compare
Pf6N2E2_902 +0.6 1.3 hypothetical protein compare
Pf6N2E2_3429 +0.6 2.4 hypothetical protein compare
Pf6N2E2_1043 +0.6 2.4 Transcriptional regulator, IclR family compare
Pf6N2E2_1490 +0.6 2.1 hypothetical protein compare
Pf6N2E2_719 +0.6 1.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_443 +0.6 2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5088 +0.6 1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1095 +0.6 1.1 Opine oxidase subunit C compare
Pf6N2E2_3529 +0.6 2.1 Toxin A compare
Pf6N2E2_1534 +0.6 1.3 Probable transmembrane protein compare
Pf6N2E2_3373 +0.6 1.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_414 +0.6 1.9 Chemotaxis protein CheD compare
Pf6N2E2_3727 +0.6 2.3 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_2285 +0.6 0.9 FIG00954079: hypothetical protein compare
Pf6N2E2_234 +0.6 1.5 FIG00454312: hypothetical protein compare
Pf6N2E2_5816 +0.6 0.8 Smr domain protein compare
Pf6N2E2_3305 +0.6 2.2 hypothetical protein compare
Pf6N2E2_2536 +0.6 1.6 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_1981 +0.6 2.6 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_1639 +0.6 2.1 ABC-type phosphate transport system, periplasmic component compare
Pf6N2E2_942 +0.6 0.8 Mll6465 protein compare
Pf6N2E2_1092 +0.6 2.1 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_672 +0.6 1.8 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_1774 +0.6 0.9 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_826 +0.5 2.8 ABC-type amino acid transport, signal transduction systems, periplasmic component/domain compare
Pf6N2E2_2640 +0.5 1.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3277 +0.5 1.9 FagA protein compare
Pf6N2E2_92 +0.5 1.3 hypothetical protein compare
Pf6N2E2_3573 +0.5 1.8 HupE-UreJ family metal transporter compare
Pf6N2E2_2306 +0.5 1.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2578 +0.5 0.9 Flagellar biosynthesis protein FliR compare
Pf6N2E2_1113 +0.5 1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_2981 +0.5 2.2 FIG00956655: hypothetical protein compare
Pf6N2E2_425 +0.5 1.9 FIG00957304: hypothetical protein compare
Pf6N2E2_2681 +0.5 2.2 3-phosphoglycerate kinase compare
Pf6N2E2_3313 +0.5 2.7 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf6N2E2_1607 +0.5 2.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2477 +0.5 1.2 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_1682 +0.5 2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_5237 +0.5 1.7 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_4708 +0.5 1.4 hypothetical protein compare
Pf6N2E2_5425 +0.5 0.8 hypothetical protein compare
Pf6N2E2_1203 +0.5 1.6 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_6022 +0.5 1.6 StbE replicon stabilization toxin compare
Pf6N2E2_1319 +0.5 1.7 FIG074102: hypothetical protein compare
Pf6N2E2_6060 +0.5 1.7 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_1158 +0.5 2.4 Cyn operon transcriptional activator compare
Pf6N2E2_533 +0.5 1.5 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_1495 +0.5 1.7 Glutamate transport membrane-spanning protein compare
Pf6N2E2_2351 +0.5 2.7 Oxygen-regulated invasion protein OrgA compare
Pf6N2E2_4146 +0.5 1.2 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_1223 +0.5 1.5 Amino acid transporters compare
Pf6N2E2_3421 +0.5 2.4 Transcriptional regulator ahyR/asaR family compare
Pf6N2E2_4427 +0.5 1.5 FIG00954215: hypothetical protein compare
Pf6N2E2_1089 +0.5 0.8 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1514 +0.5 2.0 lipoprotein OprI, putative compare
Pf6N2E2_1462 +0.5 1.9 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_4307 +0.5 2.4 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2369 +0.5 1.7 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_693 +0.5 1.2 hypothetical protein compare
Pf6N2E2_5160 +0.5 1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4990 +0.5 2.3 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_734 +0.5 1.7 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_945 +0.5 0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_1046 +0.5 1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5589 +0.5 3.0 Sodium-type flagellar protein motY precursor compare
Pf6N2E2_1504 +0.5 1.6 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_4043 +0.5 3.0 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_5086 +0.5 0.9 hypothetical protein compare
Pf6N2E2_1220 +0.5 2.0 hypothetical protein compare
Pf6N2E2_1128 +0.5 1.3 Two-component response regulator compare
Pf6N2E2_4733 +0.5 1.2 hypothetical protein compare
Pf6N2E2_5265 +0.5 2.8 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf6N2E2_5785 +0.5 1.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2438 +0.5 1.0 hypothetical protein compare
Pf6N2E2_2606 +0.5 2.4 hypothetical protein compare
Pf6N2E2_3702 +0.5 1.9 FIG00953907: hypothetical protein compare
Pf6N2E2_88 +0.5 1.0 hypothetical protein compare
Pf6N2E2_687 +0.5 1.1 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_2223 +0.5 1.3 hypothetical protein compare
Pf6N2E2_2396 +0.5 1.8 Sensor histidine kinase compare
Pf6N2E2_3009 +0.4 1.4 Phage tail tube protein compare
Pf6N2E2_537 +0.4 1.8 Na(+) H(+) antiporter subunit C compare
Pf6N2E2_3957 +0.4 2.1 Putative membrane-bound ClpP-class protease associated with aq_911 compare
Pf6N2E2_1040 +0.4 0.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1896 +0.4 1.3 hypothetical protein compare
Pf6N2E2_1799 +0.4 2.1 ABC transporter permease protein compare
Pf6N2E2_5505 +0.4 1.5 hypothetical protein compare
Pf6N2E2_1817 +0.4 1.8 hypothetical protein compare
Pf6N2E2_4928 +0.4 1.1 Permeases of the major facilitator superfamily compare
Pf6N2E2_2440 +0.4 0.8 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_503 +0.4 1.5 sensor histidine kinase compare
Pf6N2E2_3275 +0.4 2.2 FOG: TPR repeat compare
Pf6N2E2_2464 +0.4 2.7 Transcription elongation factor compare
Pf6N2E2_1656 +0.4 0.7 hypothetical protein compare
Pf6N2E2_1435 +0.4 1.4 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1694 +0.4 0.7 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1434 +0.4 0.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2375 +0.4 1.5 Response regulator NasT compare
Pf6N2E2_482 +0.4 1.3 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_4721 +0.4 1.2 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_82 +0.4 1.0 hypothetical protein compare
Pf6N2E2_1195 +0.4 1.6 hypothetical protein compare
Pf6N2E2_855 +0.4 1.1 Transcriptional regulator, IclR family compare
Pf6N2E2_2012 +0.4 1.2 hypothetical protein compare
Pf6N2E2_5830 +0.4 1.8 FIG00960829: hypothetical protein compare
Pf6N2E2_827 +0.4 1.2 probable dioxygenase compare
Pf6N2E2_1564 +0.4 2.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
Pf6N2E2_733 +0.4 1.6 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_2121 +0.4 0.8 hypothetical protein compare
Pf6N2E2_1626 +0.4 2.0 Putative ATP-binding component of a transport system compare
Pf6N2E2_339 +0.4 1.4 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_1217 +0.4 1.9 Gll2069 protein compare
Pf6N2E2_1577 +0.4 1.4 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_2795 +0.4 1.2 putative exported protein compare
Pf6N2E2_2441 +0.4 2.7 putative ATP/GTP-binding protein compare
Pf6N2E2_1893 +0.4 1.3 hypothetical protein compare
Pf6N2E2_2193 +0.4 2.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_1169 +0.4 1.1 TnpR protein compare
Pf6N2E2_3982 +0.4 1.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_338 +0.4 0.8 Transcriptional regulator, AraC family compare
Pf6N2E2_4732 +0.4 1.0 hypothetical protein compare
Pf6N2E2_1176 +0.4 1.6 Mll2356 protein compare
Pf6N2E2_1956 +0.4 2.4 Outer membrane protein romA compare
Pf6N2E2_2106 +0.4 0.8 hypothetical protein compare
Pf6N2E2_1323 +0.4 1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_6006 +0.4 2.2 L-rhamnose operon transcriptional activator RhaR compare
Pf6N2E2_3569 +0.4 1.3 hypothetical protein compare
Pf6N2E2_5392 +0.4 1.6 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_1994 +0.4 1.5 putative lipoprotein compare
Pf6N2E2_750 +0.4 1.4 Transcriptional regulator, DeoR family compare
Pf6N2E2_4128 +0.4 1.1 hypothetical protein compare
Pf6N2E2_5974 +0.4 1.7 Uncharacterized glutathione S-transferase-like protein compare
Pf6N2E2_4773 +0.4 0.8 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5494 +0.4 1.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_478 +0.4 1.1 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_5646 +0.4 1.1 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_204 +0.4 0.6 hypothetical protein compare
Pf6N2E2_2790 +0.4 1.4 Helix-turn-helix motif compare
Pf6N2E2_4359 +0.4 1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3748 +0.4 1.7 Cytochrome B561 compare
Pf6N2E2_3258 +0.4 1.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2922 +0.4 1.5 hypothetical protein compare
Pf6N2E2_1221 +0.4 1.7 sodium/hydrogen exchanger family protein compare
Pf6N2E2_809 +0.4 2.0 Various polyols ABC transporter, permease component 1 compare
Pf6N2E2_5814 +0.4 3.0 Glutaredoxin compare
Pf6N2E2_5219 +0.4 2.6 FIG140336: TPR domain protein compare
Pf6N2E2_5810 +0.4 1.9 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_37 +0.4 1.1 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_967 +0.4 1.6 DNA repair protein RadC compare
Pf6N2E2_3113 +0.4 1.9 Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110 compare
Pf6N2E2_3806 +0.4 2.0 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Pf6N2E2_255 +0.4 2.0 DoxX family protein compare
Pf6N2E2_1232 +0.4 1.9 ABC-type protease exporter, membrane fusion protein (MFP) family component PrtE/AprE compare
Pf6N2E2_3825 +0.4 1.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_464 +0.4 1.1 Sensory histidine kinase QseC compare
Pf6N2E2_1309 +0.4 1.9 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) compare
Pf6N2E2_2205 +0.4 2.1 FIG033889: YebC paralog in Betaproteobacteria compare
Pf6N2E2_3475 +0.4 0.6 hypothetical protein compare
Pf6N2E2_3454 +0.4 1.1 hypothetical protein compare
Pf6N2E2_3140 +0.4 1.4 FIG00953680: hypothetical protein compare
Pf6N2E2_1508 +0.4 1.3 DNA-binding response regulator compare
Pf6N2E2_1525 +0.4 1.5 Universal stress protein family 5 compare
Pf6N2E2_3026 +0.4 2.2 Baseplate assembly protein W compare
Pf6N2E2_491 +0.4 1.7 hypothetical protein compare
Pf6N2E2_2633 +0.4 0.9 Nitroreductase family protein compare
Pf6N2E2_55 +0.4 0.8 Probable hydrolase compare
Pf6N2E2_725 +0.4 1.6 Nitrate/nitrite response regulator protein compare
Pf6N2E2_3835 +0.4 1.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3261 +0.4 1.2 hypothetical protein compare
Pf6N2E2_5050 +0.4 1.8 hypothetical protein compare
Pf6N2E2_2204 +0.4 2.3 serine/threonine protein kinase compare
Pf6N2E2_1111 +0.4 1.4 cell wall degradation protein compare
Pf6N2E2_507 +0.4 1.5 Hydrogen cyanide synthase HcnB / Opine oxidase subunit A compare
Pf6N2E2_1301 +0.4 1.2 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
Pf6N2E2_2262 +0.4 1.1 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_5920 +0.4 1.6 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf6N2E2_1049 +0.4 1.3 hypothetical protein compare
Pf6N2E2_1805 +0.4 1.0 Multidrug resistance protein B compare
Pf6N2E2_2013 +0.4 0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium Chloride across organisms