Experiment set2IT037 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20665 -4.3 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_13070 -4.1 -6.9 phosphoserine phosphatase compare
AO353_12070 -4.0 -5.5 imidazoleglycerol-phosphate dehydratase compare
AO353_12090 -4.0 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12085 -4.0 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20695 -4.0 -5.4 O-succinylhomoserine sulfhydrylase compare
AO353_20625 -3.9 -3.8 3-isopropylmalate dehydratase compare
AO353_05115 -3.9 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07230 -3.8 -13.9 anthranilate synthase compare
AO353_02070 -3.8 -6.3 prephenate dehydratase compare
AO353_08185 -3.8 -9.4 methionine biosynthesis protein MetW compare
AO353_20635 -3.7 -10.3 3-isopropylmalate dehydrogenase compare
AO353_20620 -3.6 -6.8 isopropylmalate isomerase compare
AO353_19060 -3.6 -4.2 CysB family transcriptional regulator compare
AO353_14505 -3.6 -11.2 ketol-acid reductoisomerase compare
AO353_12515 -3.6 -19.8 glutamate synthase compare
AO353_10670 -3.5 -7.8 shikimate dehydrogenase compare
AO353_08345 -3.5 -8.7 dihydroxy-acid dehydratase compare
AO353_07220 -3.5 -8.3 anthranilate synthase compare
AO353_08180 -3.5 -12.5 homoserine O-acetyltransferase compare
AO353_12365 -3.5 -4.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_12520 -3.5 -11.0 glutamate synthase compare
AO353_00430 -3.4 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12075 -3.4 -7.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08475 -3.3 -9.0 phosphoserine phosphatase compare
AO353_13165 -3.3 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07210 -3.2 -6.2 indole-3-glycerol-phosphate synthase compare
AO353_08685 -3.1 -9.2 N-acetylglutamate synthase compare
AO353_22800 -3.1 -3.6 sulfite reductase compare
AO353_05110 -3.1 -11.0 histidinol dehydrogenase compare
AO353_02075 -3.0 -11.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_10710 -3.0 -4.1 tryptophan synthase subunit beta compare
AO353_02685 -3.0 -4.9 phosphoribosylglycinamide formyltransferase compare
AO353_14500 -2.9 -6.2 acetolactate synthase 3 regulatory subunit compare
AO353_07215 -2.9 -7.9 anthranilate phosphoribosyltransferase compare
AO353_04105 -2.9 -8.1 argininosuccinate synthase compare
AO353_08165 -2.8 -2.7 pyrroline-5-carboxylate reductase compare
AO353_07155 -2.8 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_11775 -2.8 -7.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_04155 -2.8 -12.1 ornithine carbamoyltransferase compare
AO353_14115 -2.8 -6.8 gamma-glutamyl kinase compare
AO353_09000 -2.8 -4.9 argininosuccinate lyase compare
AO353_12500 -2.7 -1.8 shikimate kinase compare
AO353_12115 -2.6 -2.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_02800 -2.6 -11.0 C4-dicarboxylate transporter conserved
AO353_06320 -2.6 -5.7 AsnC family transcriptional regulator compare
AO353_14495 -2.6 -10.7 acetolactate synthase 3 catalytic subunit compare
AO353_14370 -2.6 -7.1 glucose-6-phosphate isomerase compare
AO353_12460 -2.5 -8.5 malate dehydrogenase compare
AO353_09240 -2.5 -3.8 acetylglutamate kinase compare
AO353_05105 -2.5 -10.9 histidinol-phosphate aminotransferase compare
AO353_12360 -2.5 -9.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_16940 -2.4 -5.5 deoxycytidine triphosphate deaminase compare
AO353_06720 -2.4 -2.8 NrdR family transcriptional regulator compare
AO353_08015 -2.4 -7.4 5,10-methylenetetrahydrofolate reductase compare
AO353_08510 -2.4 -5.7 3-phosphoglycerate dehydrogenase compare
AO353_20540 -2.3 -8.0 aromatic amino acid aminotransferase compare
AO353_00620 -2.3 -3.4 cytochrome C oxidase Cbb3 compare
AO353_02250 -2.3 -4.9 chorismate synthase compare
AO353_09285 -2.2 -11.1 reactive intermediate/imine deaminase compare
AO353_06495 -2.2 -6.0 gamma-glutamyl phosphate reductase compare
AO353_11860 -2.1 -6.8 Fis family transcriptional regulator conserved
AO353_15925 -2.1 -9.4 2-isopropylmalate synthase compare
AO353_05080 -2.0 -10.7 sulfate adenylyltransferase compare
AO353_07355 -2.0 -5.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_10320 -1.9 -2.5 hypothetical protein compare
AO353_04355 -1.9 -2.4 homoserine dehydrogenase compare
AO353_14400 -1.9 -4.3 Fis family transcriptional regulator compare
AO353_12345 -1.8 -2.9 twin-arginine protein translocation system subunit TatC compare
AO353_16440 -1.8 -3.7 ArsC family transcriptional regulator compare
AO353_28425 -1.8 -4.0 TetR family transcriptional regulator compare
AO353_27650 -1.8 -4.9 cell division protein FtsK compare
AO353_08780 -1.8 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_03795 -1.7 -4.5 fumarate hydratase compare
AO353_02060 -1.7 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_03580 -1.7 -3.7 ATP-dependent DNA helicase RuvB compare
AO353_03020 -1.7 -7.1 arginine N-succinyltransferase compare
AO353_03590 -1.7 -3.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_13160 -1.7 -2.5 membrane protease HflC compare
AO353_11865 -1.7 -9.1 ATPase conserved
AO353_19295 -1.7 -2.4 hypothetical protein compare
AO353_12145 -1.6 -4.5 nitrogen regulation protein NR(I) compare
AO353_12420 -1.6 -3.4 predicted FeS cluster maintenance protein (from data) compare
AO353_03015 -1.6 -4.3 arginine N-succinyltransferase compare
AO353_05075 -1.5 -8.3 adenylylsulfate kinase compare
AO353_03815 -1.5 -2.6 heme utilization protein compare
AO353_11770 -1.5 -2.0 molecular chaperone Hsp33 compare
AO353_10705 -1.5 -3.6 tryptophan synthase subunit alpha compare
AO353_00825 -1.5 -3.5 porin compare
AO353_13640 -1.5 -4.5 histidine kinase compare
AO353_01375 -1.5 -5.3 phosphate acyltransferase compare
AO353_07315 -1.5 -2.4 rRNA methyltransferase compare
AO353_11850 -1.4 -4.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_11165 -1.4 -7.7 hypothetical protein compare
AO353_03585 -1.4 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_07610 -1.4 -1.8 hypothetical protein compare
AO353_02720 -1.3 -4.8 cysteine synthase compare
AO353_04220 -1.3 -5.0 chemotaxis protein CheY compare
AO353_03670 -1.3 -4.4 ornithine acetyltransferase compare
AO353_00515 -1.3 -3.3 hypothetical protein compare
AO353_15900 -1.3 -2.6 GTP-binding protein compare
AO353_15185 -1.3 -4.0 ATPase compare
AO353_14740 -1.3 -2.6 GTP-binding protein compare
AO353_14220 -1.3 -1.6 ribosomal large subunit pseudouridine synthase D compare
AO353_16210 -1.3 -8.2 XRE family transcriptional regulator compare
AO353_06040 -1.2 -2.8 exodeoxyribonuclease V subunit alpha compare
AO353_06155 -1.2 -6.6 copper-transporting ATPase compare
AO353_00610 -1.2 -2.3 cytochrome C oxidase Cbb3 compare
AO353_12930 -1.2 -3.4 GlcNAc-PI de-N-acetylase compare
AO353_00460 -1.2 -2.7 TetR family transcriptional regulator compare
AO353_10445 -1.2 -1.8 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_14420 -1.2 -3.1 molecular chaperone DnaK compare
AO353_20630 -1.2 -6.3 SAM-dependent methyltransferase compare
AO353_08980 -1.2 -2.6 heme biosynthesis operon protein HemX compare
AO353_01410 -1.2 -3.0 ribonuclease E compare
AO353_15250 -1.2 -3.0 cytochrome B compare
AO353_27950 -1.1 -1.7 hypothetical protein compare
AO353_03520 -1.1 -2.5 hypothetical protein compare
AO353_05690 -1.1 -2.6 SsrA-binding protein compare
AO353_20185 -1.1 -4.6 DNA-binding protein compare
AO353_14775 -1.1 -4.3 hypothetical protein compare
AO353_12105 -1.1 -4.6 peptidase S41 compare
AO353_06045 -1.1 -4.7 exodeoxyribonuclease V subunit beta compare
AO353_08875 -1.1 -2.3 amino acid ABC transporter ATP-binding protein compare
AO353_08505 -1.1 -6.9 FAD-linked oxidase compare
AO353_02810 -1.1 -5.2 histidine kinase compare
AO353_06050 -1.1 -4.4 exodeoxyribonuclease V subunit gamma compare
AO353_25640 -1.0 -2.2 AsnC family transcriptional regulator compare
AO353_10455 -1.0 -1.6 tRNA modification GTPase MnmE compare
AO353_18540 -1.0 -2.2 pseudouridine synthase compare
AO353_14940 -1.0 -2.6 malate:quinone oxidoreductase compare
AO353_07075 -1.0 -3.3 elongation factor Tu compare
AO353_06160 -1.0 -3.7 transcriptional regulator compare
AO353_16425 -1.0 -1.5 Fe-S metabolism protein SufE compare
AO353_27435 -1.0 -1.8 hypothetical protein compare
AO353_13245 -1.0 -4.9 hypothetical protein compare
AO353_15830 -1.0 -2.6 transcriptional regulator compare
AO353_16805 -1.0 -3.6 recombinase RecA compare
AO353_26045 -1.0 -1.8 hypothetical protein compare
AO353_18560 -1.0 -1.7 class I peptide chain release factor compare
AO353_18715 -1.0 -1.6 histidine kinase compare
AO353_28295 -0.9 -2.2 GNAT family acetyltransferase compare
AO353_14935 -0.9 -2.9 aminopeptidase compare
AO353_02600 -0.9 -1.7 alpha-ribazole phosphatase compare
AO353_13140 -0.9 -3.6 tRNA dimethylallyltransferase compare
AO353_24425 -0.9 -2.3 amino acid ABC transporter permease compare
AO353_12150 -0.9 -2.6 histidine kinase compare
AO353_27335 -0.9 -2.1 hypothetical protein compare
AO353_27090 -0.9 -1.8 hypothetical protein compare
AO353_11530 -0.9 -5.1 diguanylate cyclase compare
AO353_28515 -0.9 -4.0 malate:quinone oxidoreductase compare
AO353_05625 -0.9 -1.3 transcription elongation factor GreA compare
AO353_14930 -0.9 -1.8 GntR family transcriptional regulator compare
AO353_21625 -0.9 -1.7 Fe/S biogenesis protein NfuA compare
AO353_02000 -0.9 -2.8 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_29005 -0.9 -2.1 hypothetical protein compare
AO353_08885 -0.9 -6.8 polyphosphate kinase compare
AO353_14150 -0.9 -1.3 peptidylprolyl isomerase compare
AO353_27215 -0.9 -1.9 hypothetical protein compare
AO353_21645 -0.9 -2.1 cobalt transporter compare
AO353_06850 -0.9 -3.0 MFS transporter compare
AO353_16845 -0.8 -5.2 LysR family transcriptional regulator compare
AO353_09705 -0.8 -2.1 hypothetical protein compare
AO353_17175 -0.8 -2.0 beta-ketoadipyl CoA thiolase compare
AO353_16835 -0.8 -1.8 LuxR family transcriptional regulator compare
AO353_09890 -0.8 -2.8 phosphate ABC transporter ATP-binding protein compare
AO353_06100 -0.8 -1.7 thymidylate synthase compare
AO353_00835 -0.8 -3.7 transporter compare
AO353_11610 -0.8 -2.2 glutamine ABC transporter ATP-binding protein compare
AO353_21615 -0.8 -5.4 methionine synthase compare
AO353_11340 -0.8 -1.2 MarR family transcriptional regulator compare
AO353_20800 -0.8 -1.5 hypothetical protein compare
AO353_03005 -0.8 -3.2 succinylarginine dihydrolase compare
AO353_02710 -0.8 -5.1 (p)ppGpp synthetase compare
AO353_04565 -0.8 -3.1 nucleoid-associated protein compare
AO353_03615 -0.8 -1.6 cold-shock protein compare
AO353_02300 -0.8 -1.8 MarR family transcriptional regulator compare
AO353_01915 -0.8 -1.4 GlcG protein compare
AO353_13925 -0.8 -1.5 XRE family transcriptional regulator compare
AO353_14405 -0.8 -5.4 ATPase compare
AO353_00495 -0.8 -1.3 DNA topoisomerase I compare
AO353_16810 -0.8 -2.4 recombinase RecX compare
AO353_13605 -0.8 -4.0 oxidoreductase compare
AO353_09015 -0.8 -1.9 DNA-binding protein compare
AO353_20175 -0.8 -1.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_28110 -0.8 -3.0 TetR family transcriptional regulator compare
AO353_12015 -0.8 -1.7 antitoxin compare
AO353_08485 -0.8 -5.5 threonine dehydratase compare
AO353_01780 -0.7 -4.9 heat-shock protein Hsp90 compare
AO353_19965 -0.7 -2.8 phosphopantetheine-binding protein compare
AO353_10435 -0.7 -4.4 chromosome partitioning protein compare
AO353_07235 -0.7 -4.1 phosphoglycolate phosphatase compare
AO353_23620 -0.7 -1.8 hypothetical protein compare
AO353_08525 -0.7 -2.6 purine nucleoside phosphorylase compare
AO353_26945 -0.7 -1.1 transcriptional regulator compare
AO353_05520 -0.7 -3.1 nicotinate-nucleotide pyrophosphorylase compare
AO353_18095 -0.7 -2.3 hypothetical protein compare
AO353_17940 -0.7 -1.8 hypothetical protein compare
AO353_26090 -0.7 -1.9 hypothetical protein compare
AO353_17680 -0.7 -2.2 MBL fold metallo-hydrolase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Malic acid disodium salt monohydrate across organisms