Experiment set2IT037 for Shewanella loihica PV-4

Compare to:

LB with Sodium nitrite 200 mM

200 most detrimental genes:

  gene name fitness t score description  
Shew_0755 +3.6 8.1 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_2000 +3.6 4.4 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_0296 +3.4 2.9 heat shock protein Hsp20 (RefSeq) compare
Shew_1298 guaA +3.0 18.0 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_1058 +2.7 10.3 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_0570 +2.6 2.4 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) compare
Shew_2049 +2.5 6.5 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_2642 +2.5 5.5 flavodoxin (RefSeq) compare
Shew_1224 +2.4 18.3 sodium:dicarboxylate symporter (RefSeq) compare
Shew_1992 +2.2 4.7 hypothetical protein (RefSeq) compare
Shew_1202 +2.0 10.3 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1657 sucC +2.0 2.6 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_1341 +2.0 5.1 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_3660 +2.0 16.6 glutathione reductase (RefSeq) compare
Shew_0438 +2.0 1.8 GumN family protein (RefSeq) compare
Shew_1810 +1.9 6.8 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_2656 +1.8 9.4 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_2572 +1.8 6.6 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_2667 +1.7 13.8 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_2665 +1.7 14.8 beta-ketoacyl synthase (RefSeq) compare
Shew_0728 +1.7 10.9 dihydroorotase (RefSeq) compare
Shew_2668 +1.7 6.2 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_3377 +1.7 0.7 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_2666 +1.7 9.9 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_1714 +1.7 3.1 alpha/beta hydrolase fold (RefSeq) compare
Shew_2664 +1.7 6.3 transcriptional regulator, putative (RefSeq) compare
Shew_2320 +1.6 7.4 RNA methyltransferase (RefSeq) compare
Shew_1092 +1.6 7.8 amino acid carrier protein (RefSeq) compare
Shew_3267 +1.6 5.5 sodium/hydrogen exchanger (RefSeq) compare
Shew_0261 +1.5 1.1 hypothetical protein (RefSeq) compare
Shew_3682 +1.5 11.2 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1563 +1.5 6.1 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_1990 +1.4 2.6 heavy metal translocating P-type ATPase (RefSeq) compare
Shew_1865 +1.4 4.0 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_2349 +1.4 6.4 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_3681 +1.4 10.6 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1713 +1.4 2.3 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1437 +1.4 5.4 transcriptional regulator, TyrR (RefSeq) compare
Shew_3295 +1.4 7.0 AFG1 family ATPase (RefSeq) compare
Shew_3487 pyrE +1.4 4.4 orotate phosphoribosyltransferase (RefSeq) compare
Shew_1819 +1.4 3.0 GntR family transcriptional regulator (RefSeq) compare
Shew_3442 +1.4 3.0 hypothetical protein (RefSeq) compare
Shew_2906 +1.3 1.6 hypothetical protein (RefSeq) compare
Shew_0421 +1.3 1.1 phage shock protein C, PspC (RefSeq) compare
Shew_1601 +1.3 1.9 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1985 +1.3 2.8 cytochrome c oxidase, cbb3-type, subunit I (RefSeq) compare
Shew_1812 +1.3 5.7 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_0695 +1.2 1.9 hypothetical protein (RefSeq) compare
Shew_3131 +1.2 4.4 poly(A) polymerase (RefSeq) compare
Shew_2153 +1.2 1.5 LysR family transcriptional regulator (RefSeq) compare
Shew_3710 tdh +1.2 5.0 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_3522 +1.2 1.5 hypothetical protein (RefSeq) compare
Shew_2194 +1.2 0.9 hypothetical protein (RefSeq) compare
Shew_1458 +1.2 8.3 serine/threonine transporter SstT (RefSeq) compare
Shew_0343 +1.2 1.4 hypothetical protein (RefSeq) compare
Shew_2890 +1.2 1.5 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1995 +1.2 1.7 PP-loop domain-containing protein (RefSeq) compare
Shew_1015 +1.2 3.5 Cl- channel, voltage-gated family protein (RefSeq) compare
Shew_3378 +1.2 1.2 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_1078 +1.1 6.8 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_1602 +1.1 2.1 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_3500 +1.1 2.1 putative endoribonuclease L-PSP (RefSeq) compare
Shew_3716 +1.1 4.4 cytochrome c, class I (RefSeq) compare
Shew_0722 +1.1 1.1 hypothetical protein (RefSeq) compare
Shew_2199 +1.1 2.6 histidinol-phosphate aminotransferase (RefSeq) compare
Shew_1510 +1.0 1.8 peptidase M28 (RefSeq) compare
Shew_2406 +1.0 1.7 AraC family transcriptional regulator (RefSeq) compare
Shew_3427 +1.0 3.5 patatin (RefSeq) compare
Shew_1186 +1.0 2.2 transcriptional regulator NrdR (RefSeq) compare
Shew_2895 +1.0 2.6 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_3664 +1.0 7.4 alpha-L-glutamate ligase (RefSeq) compare
Shew_2646 +1.0 0.8 hypothetical protein (RefSeq) compare
Shew_3709 +1.0 6.8 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_1146 +1.0 3.8 hypothetical protein (RefSeq) compare
Shew_2061 +0.9 1.3 radical SAM domain-containing protein (RefSeq) compare
Shew_1223 +0.9 0.9 hypothetical protein (RefSeq) compare
Shew_0450 +0.9 4.5 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_1477 +0.9 2.5 anti-ECFsigma factor, ChrR (RefSeq) compare
Shew_2327 +0.9 0.6 hypothetical protein (RefSeq) compare
Shew_2751 rdgC +0.9 2.8 recombination associated protein (RefSeq) compare
Shew_1987 +0.9 2.5 Cbb3-type cytochrome oxidase component (RefSeq) compare
Shew_1059 +0.9 1.7 hypothetical protein (RefSeq) compare
Shew_2444 +0.9 1.3 hypothetical protein (RefSeq) compare
Shew_0843 +0.9 5.5 nitrate/nitrite sensor protein NarQ (RefSeq) compare
Shew_1423 +0.9 1.7 sulfate adenylyltransferase, large subunit (RefSeq) compare
Shew_1903 +0.9 1.2 para-aminobenzoate synthase, subunit I (RefSeq) compare
Shew_0316 +0.9 4.7 protein of unknown function DUF513, hemX (RefSeq) compare
Shew_0127 +0.9 1.9 LexA repressor (RefSeq) compare
Shew_2644 +0.9 2.1 hypothetical protein (RefSeq) compare
Shew_1455 +0.9 0.8 dual specificity protein phosphatase (RefSeq) compare
Shew_1231 +0.9 1.2 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) compare
Shew_0799 +0.9 1.7 MarR family transcriptional regulator (RefSeq) compare
Shew_0383 +0.9 4.5 malate dehydrogenase (RefSeq) compare
Shew_1797 +0.8 1.2 paraquat-inducible protein A (RefSeq) compare
Shew_2106 +0.8 2.8 hypothetical protein (RefSeq) compare
Shew_2026 +0.8 2.0 alanine dehydrogenase (RefSeq) compare
Shew_2175 nhaB +0.8 3.1 sodium/proton antiporter (RefSeq) compare
Shew_0430 +0.8 1.7 histone family protein DNA-binding protein (RefSeq) compare
Shew_3520 +0.8 5.0 hypothetical protein (RefSeq) compare
Shew_1590 +0.8 0.6 2OG-Fe(II) oxygenase (RefSeq) compare
Shew_1470 +0.8 4.2 sulfatase (RefSeq) compare
Shew_0097 +0.8 3.7 two component transcriptional regulator (RefSeq) compare
Shew_1920 +0.8 2.9 alpha/beta hydrolase fold (RefSeq) compare
Shew_0797 +0.8 1.4 hypothetical protein (RefSeq) compare
Shew_0932 +0.8 1.2 radical SAM domain-containing protein (RefSeq) compare
Shew_1925 +0.8 3.7 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq) compare
Shew_2367 +0.8 1.1 hypothetical protein (RefSeq) compare
Shew_1287 +0.8 2.6 hypothetical protein (RefSeq) compare
Shew_2198 +0.8 1.1 histidinol dehydrogenase (RefSeq) compare
Shew_1716 +0.8 1.5 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq) compare
Shew_1013 +0.8 6.4 aspartate carbamoyltransferase (RefSeq) compare
Shew_3297 +0.8 1.3 periplasmic serine protease DegS (RefSeq) compare
Shew_0546 +0.8 1.9 hypothetical protein (RefSeq) compare
Shew_1488 +0.8 1.3 FAD linked oxidase domain-containing protein (RefSeq) compare
Shew_0854 +0.7 1.7 hypothetical protein (RefSeq) compare
Shew_0057 +0.7 1.7 cytoplasmic chaperone TorD family protein (RefSeq) compare
Shew_2884 +0.7 1.3 glycine cleavage system regulatory protein-like protein (RefSeq) compare
Shew_3517 +0.7 4.0 histidine ammonia-lyase (RefSeq) compare
Shew_1932 cls +0.7 3.5 cardiolipin synthetase (RefSeq) compare
Shew_0788 +0.7 2.0 dienelactone hydrolase (RefSeq) compare
Shew_2957 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_1926 +0.7 1.5 transketolase, central region (RefSeq) compare
Shew_1461 +0.7 1.8 zinc carboxypeptidase-related protein (RefSeq) compare
Shew_3064 gcvT +0.7 5.2 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_2838 carB +0.7 4.6 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_0828 +0.7 0.6 LysR family transcriptional regulator (RefSeq) compare
Shew_1300 +0.7 2.2 lytic transglycosylase, catalytic (RefSeq) compare
Shew_1780 +0.7 3.5 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_1163 +0.7 1.3 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_2300 +0.7 1.8 hypothetical protein (RefSeq) compare
Shew_2544 +0.7 1.4 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_1575 +0.7 2.8 uridine kinase (RefSeq) compare
Shew_3051 +0.7 1.9 cupin 2 domain-containing protein (RefSeq) compare
Shew_0708 +0.7 1.5 hypothetical protein (RefSeq) compare
Shew_2892 +0.7 1.6 major facilitator transporter (RefSeq) compare
Shew_3528 +0.7 1.7 rhodanese domain-containing protein (RefSeq) compare
Shew_2025 +0.7 3.1 leucine-responsive transcriptional regulator (RefSeq) compare
Shew_3683 +0.7 2.6 extracellular solute-binding protein (RefSeq) compare
Shew_1431 +0.7 1.5 hypothetical protein (RefSeq) compare
Shew_0618 +0.7 1.1 hypothetical protein (RefSeq) compare
Shew_1235 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_1836 +0.6 2.3 uracil-xanthine permease (RefSeq) compare
Shew_1782 +0.6 3.5 MarR family transcriptional regulator (RefSeq) compare
Shew_3695 +0.6 0.9 cytidyltransferase-like protein (RefSeq) compare
Shew_3383 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_0023 +0.6 1.9 protoporphyrinogen oxidase (RefSeq) compare
Shew_2282 +0.6 0.8 Fis family transcriptional regulator (RefSeq) compare
Shew_2795 +0.6 2.0 xanthine/uracil/vitamin C permease (RefSeq) compare
Shew_1295 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_3080 +0.6 2.0 thiol:disulfide interchange protein, putative (RefSeq) compare
Shew_0394 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_2155 +0.6 1.7 4-hydroxyphenylpyruvate dioxygenase (RefSeq) compare
Shew_2014 +0.6 1.8 hypothetical protein (RefSeq) compare
Shew_1257 +0.6 2.1 DNA repair protein RadC (RefSeq) compare
Shew_1929 +0.6 2.5 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_1675 +0.6 3.6 peptidase S9 prolyl oligopeptidase (RefSeq) compare
Shew_2389 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_1867 +0.6 1.9 hypothetical protein (RefSeq) compare
Shew_3266 dipZ +0.6 0.9 thiol:disulfide interchange protein precursor (RefSeq) compare
Shew_2280 +0.6 2.0 phenylalanine/histidine ammonia-lyase (RefSeq) compare
Shew_2464 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_0084 +0.6 0.8 hypothetical protein (RefSeq) compare
Shew_3188 +0.6 3.5 aromatic amino acid permease (RefSeq) compare
Shew_0616 +0.6 2.0 SH3 domain-containing protein (RefSeq) compare
Shew_3786 +0.6 0.6 hypothetical protein (RefSeq) compare
Shew_3271 +0.6 3.7 galactokinase (RefSeq) compare
Shew_3255 +0.6 0.7 hypothetical protein (RefSeq) compare
Shew_3268 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_2508 clpP +0.6 0.7 ATP-dependent Clp protease proteolytic subunit (RefSeq) compare
Shew_2411 +0.6 1.4 FAD dependent oxidoreductase (RefSeq) compare
Shew_1514 upp +0.6 1.6 uracil phosphoribosyltransferase (RefSeq) compare
Shew_0301 +0.6 0.6 AsnC family transcriptional regulator (RefSeq) compare
Shew_2652 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_3052 +0.6 1.5 AraC family transcriptional regulator (RefSeq) compare
Shew_0966 +0.6 1.1 beta alanine--pyruvate transaminase (RefSeq) compare
Shew_0756 +0.6 0.8 hypothetical protein (RefSeq) compare
Shew_1684 +0.6 1.8 lysine exporter protein LysE/YggA (RefSeq) compare
Shew_0571 +0.6 0.7 cytochrome b/b6 domain-containing protein (RefSeq) compare
Shew_2724 +0.6 2.2 indigoidine synthase A family protein (RefSeq) compare
Shew_1776 +0.5 2.1 acetolactate synthase 3 catalytic subunit (RefSeq) compare
Shew_1432 +0.5 0.7 ferredoxin-type protein NapF (RefSeq) compare
Shew_0136 +0.5 3.1 stearoyl-CoA 9-desaturase (RefSeq) compare
Shew_3167 +0.5 1.4 hypothetical protein (RefSeq) compare
Shew_1230 +0.5 1.3 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq) compare
Shew_2589 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_0481 +0.5 2.0 hypothetical protein (RefSeq) compare
Shew_1531 grxA +0.5 1.2 glutaredoxin 1 (RefSeq) compare
Shew_1758 +0.5 1.6 hydrogenase assembly chaperone hypC/hupF (RefSeq) compare
Shew_2252 +0.5 0.5 anthranilate synthase component II (RefSeq) compare
Shew_1659 +0.5 1.6 ferredoxin-dependent glutamate synthase (RefSeq) compare
Shew_2148 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_2414 +0.5 2.2 ATP-NAD/AcoX kinase (RefSeq) compare
Shew_0718 +0.5 1.5 cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq) compare
Shew_0395 +0.5 1.2 methylation site containing protein (RefSeq) compare
Shew_1800 +0.5 0.8 putative GAF sensor protein (RefSeq) compare
Shew_2900 +0.5 1.9 hypothetical protein (RefSeq) compare
Shew_1852 +0.5 1.3 acriflavin resistance protein (RefSeq) compare
Shew_1564 +0.5 1.0 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Shew_3126 +0.5 2.2 2'-5' RNA ligase (RefSeq) compare
Shew_3189 +0.5 2.8 hypothetical protein (RefSeq) compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrite in Shewanella loihica PV-4

For stress Sodium nitrite across organisms