Experiment set2IT036 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Sodium arsenate dibasic heptahydrate 15.625 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS05735 -4.6 -8.2 maleylacetoacetate isomerase compare
LRK54_RS01390 -4.4 -14.8 ACR3 family arsenite efflux transporter conserved
LRK54_RS15025 -3.9 -6.0 phosphate regulon sensor histidine kinase PhoR compare
LRK54_RS15030 -3.8 -12.3 phosphate regulon transcriptional regulator PhoB compare
LRK54_RS05775 -3.8 -7.7 pyruvate kinase compare
LRK54_RS01395 -3.6 -3.3 arsenate reductase ArsC compare
LRK54_RS10065 -3.5 -3.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS00320 -3.5 -4.1 phosphoglycerate mutase compare
LRK54_RS09805 -3.4 -2.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS14590 -3.4 -4.0 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS04350 -3.4 -3.3 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS02335 -3.3 -8.5 FUSC family protein compare
LRK54_RS05785 -3.2 -6.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS02895 -3.2 -7.9 rhomboid family intramembrane serine protease compare
LRK54_RS06475 -3.1 -10.5 lipoyl synthase compare
LRK54_RS12860 -3.1 -3.0 RNase adapter RapZ compare
LRK54_RS06685 -3.1 -12.7 TolC family outer membrane protein compare
LRK54_RS01680 -3.0 -7.0 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS04585 -3.0 -4.6 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS08585 -3.0 -20.9 RimK family alpha-L-glutamate ligase compare
LRK54_RS04720 -2.9 -6.2 phosphoribosylformylglycinamidine synthase compare
LRK54_RS11975 -2.9 -5.9 SLC13 family permease compare
LRK54_RS11375 -2.9 -8.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS07020 -2.9 -2.0 ABC transporter permease compare
LRK54_RS02090 -2.9 -14.6 NAD-glutamate dehydrogenase compare
LRK54_RS03290 -2.9 -2.0 RIP metalloprotease RseP compare
LRK54_RS05980 -2.8 -2.0 ATP-binding protein compare
LRK54_RS10355 -2.8 -2.7 threonine synthase compare
LRK54_RS04140 -2.8 -7.0 inositol-phosphate phosphatase compare
LRK54_RS00620 -2.8 -8.6 FtsH protease activity modulator HflK compare
LRK54_RS00440 -2.8 -7.4 high frequency lysogenization protein HflD compare
LRK54_RS07215 -2.8 -6.7 cytochrome c4 compare
LRK54_RS12945 -2.8 -7.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS06470 -2.8 -10.9 carboxy terminal-processing peptidase compare
LRK54_RS05650 -2.8 -3.3 ABC transporter ATP-binding protein compare
LRK54_RS00675 -2.7 -9.7 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS17505 -2.7 -3.7 preprotein translocase subunit SecG compare
LRK54_RS14695 -2.7 -12.1 rhomboid family intramembrane serine protease compare
LRK54_RS05415 -2.7 -7.7 TetR/AcrR family transcriptional regulator compare
LRK54_RS06755 -2.7 -18.2 LTA synthase family protein compare
LRK54_RS07195 -2.7 -2.2 hypothetical protein compare
LRK54_RS05495 -2.7 -6.6 met regulon transcriptional regulator MetJ compare
LRK54_RS11170 -2.7 -3.6 NADP-dependent malic enzyme compare
LRK54_RS16660 -2.6 -8.8 VTT domain-containing protein compare
LRK54_RS03125 -2.6 -1.8 preprotein translocase subunit YajC compare
LRK54_RS16615 -2.6 -1.8 phosphopyruvate hydratase compare
LRK54_RS01685 -2.6 -11.6 tryptophan synthase subunit beta compare
LRK54_RS11290 -2.6 -1.8 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS13760 -2.6 -8.4 trypsin-like peptidase domain-containing protein compare
LRK54_RS16940 -2.6 -4.6 RNA polymerase sigma factor RpoE compare
LRK54_RS15040 -2.6 -5.0 glutaredoxin 3 compare
LRK54_RS08760 -2.6 -3.5 transaldolase compare
LRK54_RS00615 -2.5 -6.5 protease modulator HflC compare
LRK54_RS00695 -2.5 -4.2 methylisocitrate lyase compare
LRK54_RS11565 -2.5 -4.8 anthranilate phosphoribosyltransferase compare
LRK54_RS18050 -2.5 -10.8 lipopolysaccharide assembly protein LapB compare
LRK54_RS05110 -2.5 -1.5 glycosyltransferase family 4 protein compare
LRK54_RS06785 -2.5 -1.7 protein-disulfide reductase DsbD compare
LRK54_RS05655 -2.5 -2.9 ABC transporter permease compare
LRK54_RS06675 -2.5 -9.3 TetR/AcrR family transcriptional regulator compare
LRK54_RS06885 -2.5 -7.5 rhodanese-like domain-containing protein compare
LRK54_RS03110 -2.5 -9.7 nucleotidyltransferase family protein compare
LRK54_RS05740 -2.5 -6.5 phosphoglycerate kinase compare
LRK54_RS00085 -2.5 -1.7 tetratricopeptide repeat protein compare
LRK54_RS04050 -2.5 -8.7 glycoside hydrolase compare
LRK54_RS16655 -2.4 -3.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS14825 -2.4 -5.6 protease HtpX compare
LRK54_RS12865 -2.4 -8.8 HPr(Ser) kinase/phosphatase compare
LRK54_RS17270 -2.4 -2.8 DNA translocase FtsK compare
LRK54_RS06720 -2.4 -12.8 glycosyltransferase compare
LRK54_RS05985 -2.4 -3.2 response regulator transcription factor compare
LRK54_RS06480 -2.4 -11.2 lipoyl(octanoyl) transferase LipB compare
LRK54_RS11175 -2.4 -7.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS14670 -2.4 -2.8 NrsF family protein compare
LRK54_RS11385 -2.3 -5.0 co-chaperone DjlA compare
LRK54_RS09495 -2.3 -9.0 arsenosugar biosynthesis radical SAM protein ArsS compare
LRK54_RS12460 -2.3 -2.2 hypothetical protein compare
LRK54_RS04995 -2.2 -4.8 LacI family DNA-binding transcriptional regulator compare
LRK54_RS12855 -2.2 -5.7 PTS fructose transporter subunit IIA compare
LRK54_RS12190 -2.2 -7.7 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS02070 -2.2 -6.0 acyl-CoA dehydrogenase family protein compare
LRK54_RS00680 -2.2 -10.4 TerC family protein compare
LRK54_RS00670 -2.2 -4.6 OmpA family protein compare
LRK54_RS01585 -2.2 -7.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS15035 -2.1 -5.5 M48 family metalloprotease compare
LRK54_RS11560 -2.1 -4.6 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS02460 -2.1 -8.9 phosphoglycolate phosphatase compare
LRK54_RS09480 -2.1 -5.6 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK54_RS16110 -2.1 -10.1 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS00420 -2.1 -14.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS02275 -2.1 -4.6 enoyl-CoA hydratase-related protein compare
LRK54_RS10150 -2.1 -2.4 DNA topoisomerase I compare
LRK54_RS05550 -2.1 -2.8 FAD-binding protein compare
LRK54_RS16755 -2.0 -3.7 SurA N-terminal domain-containing protein compare
LRK54_RS16600 -2.0 -10.8 aminopeptidase P family protein compare
LRK54_RS12295 -2.0 -3.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS17905 -2.0 -3.0 NfuA family Fe-S biogenesis protein compare
LRK54_RS03405 -2.0 -7.7 ribonuclease G compare
LRK54_RS02855 -2.0 -5.6 type I restriction-modification system subunit M compare
LRK54_RS02535 -2.0 -5.0 50S ribosomal protein L9 compare
LRK54_RS09485 -1.9 -3.8 TIGR04283 family arsenosugar biosynthesis glycosyltransferase compare
LRK54_RS17025 -1.9 -1.7 cold-shock protein compare
LRK54_RS12670 -1.9 -8.4 glycosyltransferase compare
LRK54_RS16930 -1.9 -9.8 hypothetical protein compare
LRK54_RS11570 -1.9 -4.4 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS04630 -1.9 -1.3 energy-dependent translational throttle protein EttA compare
LRK54_RS00690 -1.8 -10.2 2-methylcitrate synthase compare
LRK54_RS03710 -1.8 -7.8 tetratricopeptide repeat protein compare
LRK54_RS02380 -1.8 -5.9 argininosuccinate lyase compare
LRK54_RS08365 -1.8 -13.3 class 1 fructose-bisphosphatase compare
LRK54_RS16740 -1.8 -2.6 HU family DNA-binding protein compare
LRK54_RS16730 -1.8 -1.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS07310 -1.8 -9.9 pteridine reductase compare
LRK54_RS02285 -1.7 -10.5 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS16720 -1.7 -6.4 trigger factor compare
LRK54_RS05200 -1.7 -3.2 hypothetical protein compare
LRK54_RS13830 -1.7 -7.9 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS01580 -1.6 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS10950 -1.6 -10.2 S41 family peptidase compare
LRK54_RS00345 -1.6 -3.7 TraB/GumN family protein compare
LRK54_RS06610 -1.6 -11.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS11765 -1.6 -8.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS09945 -1.6 -5.8 class I SAM-dependent methyltransferase compare
LRK54_RS09515 -1.5 -7.6 DNA-binding domain-containing protein compare
LRK54_RS05670 -1.5 -5.3 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS17660 -1.5 -3.2 hypothetical protein compare
LRK54_RS01400 -1.5 -3.6 arsenical resistance protein ArsH compare
LRK54_RS12595 -1.5 -4.1 (2Fe-2S)-binding protein compare
LRK54_RS12600 -1.5 -11.7 amino acid permease compare
LRK54_RS04820 -1.5 -1.3 GspH/FimT family pseudopilin compare
LRK54_RS06495 -1.5 -10.2 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS18060 -1.5 -4.7 polysaccharide biosynthesis protein compare
LRK54_RS16865 -1.4 -6.8 protein phosphatase 2C domain-containing protein compare
LRK54_RS05660 -1.4 -8.3 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS13910 -1.4 -5.3 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS05765 -1.4 -7.2 fructose-bisphosphate aldolase class I compare
LRK54_RS05610 -1.4 -7.0 GtrA family protein compare
LRK54_RS16935 -1.4 -9.9 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS16735 -1.4 -9.9 endopeptidase La compare
LRK54_RS00080 -1.4 -7.1 helix-turn-helix domain-containing protein compare
LRK54_RS02185 -1.4 -3.7 exodeoxyribonuclease V subunit alpha compare
LRK54_RS09345 -1.4 -2.5 ATP-binding protein compare
LRK54_RS00495 -1.3 -9.1 ribonuclease R compare
LRK54_RS04255 -1.3 -7.1 type IV pilus twitching motility protein PilT compare
LRK54_RS04625 -1.3 -8.4 serine hydroxymethyltransferase compare
LRK54_RS05725 -1.3 -5.3 DUF4398 domain-containing protein compare
LRK54_RS01590 -1.3 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS01410 -1.3 -9.1 ABC transporter ATP-binding protein/permease compare
LRK54_RS16950 -1.3 -9.6 Do family serine endopeptidase compare
LRK54_RS02325 -1.3 -2.8 SDR family oxidoreductase compare
LRK54_RS10185 -1.3 -9.7 RDD family protein compare
LRK54_RS02550 -1.3 -2.9 iron-sulfur cluster assembly accessory protein compare
LRK54_RS12590 -1.2 -8.4 molybdopterin-dependent oxidoreductase compare
LRK54_RS01285 -1.2 -4.6 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS02445 -1.2 -1.4 membrane protein insertion efficiency factor YidD compare
LRK54_RS16875 -1.2 -9.5 kinase/pyrophosphorylase compare
LRK54_RS12305 -1.2 -7.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS04450 -1.2 -4.4 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS16650 -1.2 -5.1 5'/3'-nucleotidase SurE compare
LRK54_RS03200 -1.2 -5.4 integration host factor subunit alpha compare
LRK54_RS16955 -1.2 -7.7 translation elongation factor 4 compare
LRK54_RS16050 -1.2 -0.8 tetratricopeptide repeat protein compare
LRK54_RS01600 -1.2 -7.1 histidinol-phosphate transaminase compare
LRK54_RS07980 -1.2 -2.6 nitrogen regulation protein NR(I) compare
LRK54_RS06420 -1.2 -1.9 hypothetical protein compare
LRK54_RS03105 -1.2 -7.3 phosphotransferase compare
LRK54_RS16665 -1.1 -6.0 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS15265 -1.1 -6.3 acetyl-CoA C-acyltransferase compare
LRK54_RS12580 -1.1 -2.6 hypothetical protein compare
LRK54_RS00815 -1.1 -4.3 pseudouridine synthase compare
LRK54_RS02180 -1.1 -5.4 UvrD-helicase domain-containing protein compare
LRK54_RS05710 -1.1 -7.8 pyridoxal-phosphate dependent enzyme compare
LRK54_RS02175 -1.1 -6.1 exodeoxyribonuclease V subunit gamma compare
LRK54_RS04305 -1.1 -2.1 shikimate kinase compare
LRK54_RS00395 -1.1 -2.5 prephenate dehydratase compare
LRK54_RS11770 -1.1 -8.3 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS09510 -1.1 -5.2 DoxX family protein compare
LRK54_RS00405 -1.0 -3.8 FHA domain-containing protein compare
LRK54_RS14800 -1.0 -1.2 cytochrome c compare
LRK54_RS06425 -1.0 -2.0 ribonucleoside-diphosphate reductase compare
LRK54_RS08670 -1.0 -6.7 LacI family transcriptional regulator compare
LRK54_RS00705 -1.0 -5.9 alkyl hydroperoxide reductase subunit C compare
LRK54_RS11890 -1.0 -2.1 O-acetyl-ADP-ribose deacetylase compare
LRK54_RS11830 -1.0 -8.5 penicillin-binding protein 1A compare
LRK54_RS11285 -1.0 -4.0 ABC transporter ATP-binding protein compare
LRK54_RS00305 -1.0 -6.7 asparagine synthase B compare
LRK54_RS12625 -1.0 -5.9 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS10865 -1.0 -7.1 DEAD/DEAH box helicase compare
LRK54_RS03675 -1.0 -1.7 redox-regulated ATPase YchF compare
LRK54_RS03895 -1.0 -6.5 lipopolysaccharide biosynthesis protein compare
LRK54_RS14465 -1.0 -3.7 septum site-determining protein MinC compare
LRK54_RS09125 -1.0 -3.4 hypothetical protein compare
LRK54_RS11415 -1.0 -6.7 anthranilate synthase component I compare
LRK54_RS02920 -1.0 -7.0 SET domain-containing protein compare
LRK54_RS03395 -1.0 -8.4 metalloprotease TldD compare
LRK54_RS13915 -1.0 -7.2 beta-ketoacyl-ACP synthase I compare
LRK54_RS07075 -1.0 -6.4 magnesium-translocating P-type ATPase compare
LRK54_RS09500 -0.9 -6.2 bifunctional TVP38/TMEM64 family protein/FAD-dependent oxidoreductase compare
LRK54_RS05530 -0.9 -4.4 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS09520 -0.9 -6.3 DUF692 domain-containing protein compare


Specific Phenotypes

For 9 genes in this experiment

For stress Sodium arsenate dibasic heptahydrate in Rhodanobacter denitrificans FW104-10B01

For stress Sodium arsenate dibasic heptahydrate across organisms