Experiment set2IT036 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Lomefloxacin hydrochloride 0.1 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS09140 +1.5 4.6 MerR family transcriptional regulator compare
CA265_RS02765 +1.4 5.2 cell division protein ZapA compare
CA265_RS05030 +1.1 3.8 GNAT family N-acetyltransferase compare
CA265_RS14410 +1.0 7.2 4-amino-4-deoxychorismate lyase compare
CA265_RS01975 +0.9 4.3 cell division protein compare
CA265_RS21065 +0.8 2.6 hypothetical protein compare
CA265_RS03275 +0.8 3.7 hypothetical protein compare
CA265_RS23545 +0.8 1.6 NADH dehydrogenase subunit D compare
CA265_RS09425 +0.7 2.1 hypothetical protein compare
CA265_RS04385 +0.7 3.0 hypothetical protein compare
CA265_RS09335 +0.7 3.0 DUF4442 domain-containing protein compare
CA265_RS06595 +0.7 1.3 Arc family DNA binding domain-containing protein compare
CA265_RS10600 +0.7 3.0 RNA polymerase subunit sigma-24 compare
CA265_RS17315 +0.7 1.0 hypothetical protein compare
CA265_RS18125 +0.7 3.2 gliding motility protein GldL compare
CA265_RS21330 +0.6 3.8 TetR family transcriptional regulator compare
CA265_RS09740 +0.6 0.7 transcriptional regulator compare
CA265_RS10040 +0.6 1.5 hypothetical protein compare
CA265_RS12780 +0.6 1.5 hypothetical protein compare
CA265_RS04445 +0.6 1.5 hypothetical protein compare
CA265_RS08775 +0.6 1.0 hypothetical protein compare
CA265_RS13050 +0.6 3.2 hypothetical protein compare
CA265_RS10000 +0.6 1.8 nitrite reductase small subunit compare
CA265_RS08315 +0.6 1.1 tRNA-Lys compare
CA265_RS16785 +0.6 1.4 50S ribosomal protein L17 compare
CA265_RS11545 +0.6 1.4 hypothetical protein compare
CA265_RS00515 +0.6 2.2 hypothetical protein compare
CA265_RS17025 +0.6 1.3 hypothetical protein compare
CA265_RS22800 +0.6 4.0 glycosyl transferase compare
CA265_RS05035 +0.6 1.9 TetR family transcriptional regulator compare
CA265_RS05575 +0.6 1.6 hypothetical protein compare
CA265_RS25335 +0.6 1.3 hypothetical protein compare
CA265_RS12855 +0.6 2.0 hypothetical protein compare
CA265_RS06265 +0.5 1.9 cold-shock protein compare
CA265_RS16990 +0.5 1.8 hypothetical protein compare
CA265_RS07755 +0.5 1.4 hypothetical protein compare
CA265_RS04485 +0.5 1.7 hypothetical protein compare
CA265_RS02315 +0.5 2.3 single-stranded DNA-binding protein compare
CA265_RS03495 +0.5 1.4 cytochrome c biogenesis protein compare
CA265_RS08965 +0.5 3.3 thioesterase compare
CA265_RS19405 +0.5 2.3 transcriptional regulator compare
CA265_RS02655 +0.5 2.0 hypothetical protein compare
CA265_RS16155 +0.5 2.8 tRNA pseudouridine(55) synthase TruB compare
CA265_RS19940 +0.5 4.1 hypothetical protein compare
CA265_RS20315 +0.5 4.1 hypothetical protein compare
CA265_RS14390 +0.5 2.3 hypothetical protein compare
CA265_RS03490 +0.5 2.5 hypothetical protein compare
CA265_RS03435 +0.5 1.3 hypothetical protein compare
CA265_RS02840 +0.5 2.5 30S ribosomal protein S30 compare
CA265_RS13045 +0.5 3.2 hypothetical protein compare
CA265_RS20320 +0.5 4.2 hypothetical protein compare
CA265_RS08570 +0.5 1.2 dehydratase compare
CA265_RS24955 +0.4 2.0 methyltransferase type 11 compare
CA265_RS18115 +0.4 3.1 gliding motility protein GldN compare
CA265_RS19500 +0.4 2.8 methyltransferase type 11 compare
CA265_RS22310 +0.4 1.7 superoxide dismutase compare
CA265_RS18745 +0.4 1.1 hypothetical protein compare
CA265_RS18850 +0.4 1.5 hypothetical protein compare
CA265_RS04560 +0.4 0.7 hypothetical protein compare
CA265_RS19540 +0.4 3.8 tail-specific protease compare
CA265_RS12745 +0.4 2.1 NUDIX hydrolase compare
CA265_RS19465 +0.4 1.6 protein tyrosine phosphatase compare
CA265_RS17555 +0.4 3.3 hypothetical protein compare
CA265_RS08445 +0.4 0.8 endonuclease compare
CA265_RS00655 +0.4 2.6 RNA polymerase subunit sigma-24 compare
CA265_RS21255 +0.4 3.5 hypothetical protein compare
CA265_RS08070 +0.4 0.9 tRNA-Ser compare
CA265_RS14015 +0.4 1.7 transcriptional regulator compare
CA265_RS04040 +0.4 1.6 hypothetical protein compare
CA265_RS25180 +0.4 2.3 hypothetical protein compare
CA265_RS18780 +0.4 1.1 YicC family protein compare
CA265_RS20095 +0.4 1.7 NADH oxidase compare
CA265_RS10385 +0.4 1.5 hypothetical protein compare
CA265_RS24355 +0.4 1.3 transcriptional regulator compare
CA265_RS15535 +0.4 0.8 methionine sulfoxide reductase B compare
CA265_RS00630 +0.4 2.8 hypothetical protein compare
CA265_RS22805 +0.4 3.0 glycosyl transferase compare
CA265_RS12950 +0.4 2.2 hypothetical protein compare
CA265_RS21035 +0.4 2.5 3-oxoacyl-ACP synthase compare
CA265_RS19140 +0.4 1.0 tRNA-Ile compare
CA265_RS19640 +0.4 1.7 hypothetical protein compare
CA265_RS11690 +0.4 1.9 DNA-binding protein compare
CA265_RS19055 +0.4 2.6 nitronate monooxygenase compare
CA265_RS16140 +0.4 0.6 hypothetical protein compare
CA265_RS10750 +0.4 2.4 SMC-Scp complex subunit ScpB compare
CA265_RS01225 +0.4 1.6 hypothetical protein compare
CA265_RS19705 +0.4 2.0 tRNA-binding protein compare
CA265_RS00015 +0.4 2.0 hypothetical protein compare
CA265_RS19080 +0.4 1.5 hypothetical protein compare
CA265_RS20380 +0.4 2.6 hemagglutinin compare
CA265_RS21605 +0.4 1.8 sensor histidine kinase compare
CA265_RS23630 +0.4 2.0 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
CA265_RS24650 +0.4 1.7 beta-phosphoglucomutase compare
CA265_RS20610 +0.4 1.2 hypothetical protein compare
CA265_RS09040 +0.4 2.4 ribonuclease Z compare
CA265_RS23140 +0.4 1.9 hypothetical protein compare
CA265_RS09330 +0.4 2.0 AAA family ATPase compare
CA265_RS06510 +0.3 1.5 hypothetical protein compare
CA265_RS16130 +0.3 1.1 cell division protein FtsX compare
CA265_RS11030 +0.3 0.6 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS09320 +0.3 1.0 hypothetical protein compare
CA265_RS11975 +0.3 1.6 hypothetical protein compare
CA265_RS18465 +0.3 1.6 RNA-splicing ligase RtcB compare
CA265_RS23020 +0.3 2.5 hypothetical protein compare
CA265_RS19345 +0.3 2.5 hypothetical protein compare
CA265_RS18225 +0.3 2.3 DNA-binding response regulator compare
CA265_RS11955 +0.3 1.7 Error-prone repair protein ImuA compare
CA265_RS01205 +0.3 1.8 import component protein compare
CA265_RS20070 +0.3 1.8 NadR compare
CA265_RS17560 +0.3 2.1 peptidylprolyl isomerase compare
CA265_RS07800 +0.3 1.8 Fe-S oxidoreductase compare
CA265_RS18120 +0.3 2.6 gliding motility protein GldM compare
CA265_RS23640 +0.3 2.4 hypothetical protein compare
CA265_RS07620 +0.3 1.5 hypothetical protein compare
CA265_RS09050 +0.3 1.7 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS25305 +0.3 1.7 hypothetical protein compare
CA265_RS23905 +0.3 2.3 hypothetical protein compare
CA265_RS04780 +0.3 1.4 polyketide cyclase compare
CA265_RS17565 +0.3 0.8 hypothetical protein compare
CA265_RS21360 +0.3 0.8 hypothetical protein compare
CA265_RS12860 +0.3 1.2 nitroreductase compare
CA265_RS03715 +0.3 0.9 hypothetical protein compare
CA265_RS17115 +0.3 1.3 arsenate reductase compare
CA265_RS18485 +0.3 1.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS24360 +0.3 1.9 ATPase compare
CA265_RS18985 +0.3 2.1 hypothetical protein compare
CA265_RS17060 +0.3 2.2 adenylyl-sulfate kinase compare
CA265_RS22305 +0.3 1.2 hypothetical protein compare
CA265_RS12475 +0.3 1.3 hypothetical protein compare
CA265_RS11055 +0.3 1.9 hypothetical protein compare
CA265_RS07425 +0.3 1.8 GLPGLI family protein compare
CA265_RS04305 +0.3 0.8 hypothetical protein compare
CA265_RS15640 +0.3 2.3 sugar kinase compare
CA265_RS01840 +0.3 1.9 hypothetical protein compare
CA265_RS14260 +0.3 1.6 restriction endonuclease subunit R compare
CA265_RS21260 +0.3 2.5 hypothetical protein compare
CA265_RS23310 +0.3 1.2 polyketide cyclase compare
CA265_RS09575 +0.3 1.6 hypothetical protein compare
CA265_RS10665 +0.3 1.7 Rossman fold protein, TIGR00730 family compare
CA265_RS05135 +0.3 1.5 ferritin compare
CA265_RS07460 +0.3 1.0 deoxynucleoside kinase compare
CA265_RS07615 +0.3 0.9 hypothetical protein compare
CA265_RS02570 +0.3 1.1 GNAT family N-acetyltransferase compare
CA265_RS04140 +0.3 2.4 glycogen synthase compare
CA265_RS24625 +0.3 2.4 LacI family transcriptional regulator compare
CA265_RS21915 +0.3 2.2 LacI family transcriptional regulator compare
CA265_RS18900 +0.3 1.9 DNA-binding protein compare
CA265_RS21265 +0.3 2.0 hypothetical protein compare
CA265_RS06920 +0.3 2.0 transcription-repair coupling factor compare
CA265_RS21220 +0.3 1.4 hypothetical protein compare
CA265_RS20280 +0.3 1.6 DoxX family protein compare
CA265_RS12850 +0.3 0.9 3-oxoacyl-ACP synthase compare
CA265_RS07075 +0.3 2.0 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS12590 +0.3 1.7 hypothetical protein compare
CA265_RS23470 +0.3 1.5 homoserine kinase (EC 2.7.1.39) (from data) compare
CA265_RS16650 +0.3 1.8 GNAT family N-acetyltransferase compare
CA265_RS09035 +0.3 1.2 anti-anti-sigma factor compare
CA265_RS18990 +0.3 2.7 cell surface protein SprA compare
CA265_RS13225 +0.3 2.0 exonuclease compare
CA265_RS19930 +0.3 1.8 hypothetical protein compare
CA265_RS24055 +0.3 1.5 GNAT family N-acetyltransferase compare
CA265_RS16270 +0.3 1.6 hypothetical protein compare
CA265_RS19690 +0.3 1.5 hypothetical protein compare
CA265_RS17535 +0.3 1.7 deoxyribodipyrimidine photolyase compare
CA265_RS22945 +0.3 1.2 hypothetical protein compare
CA265_RS08115 +0.3 1.3 hypothetical protein compare
CA265_RS08295 +0.3 0.9 hypothetical protein compare
CA265_RS18840 +0.3 1.5 transposase compare
CA265_RS23265 +0.3 0.8 iron-binding protein compare
CA265_RS12280 +0.3 0.9 hypothetical protein compare
CA265_RS25100 +0.3 1.8 hypothetical protein compare
CA265_RS18895 +0.3 2.0 ATPase compare
CA265_RS05630 +0.3 1.9 hypothetical protein compare
CA265_RS22905 +0.3 1.0 GTPase HflX compare
CA265_RS16100 +0.3 2.1 serine/threonine protein kinase compare
CA265_RS03450 +0.3 1.5 hypothetical protein compare
CA265_RS04995 +0.3 1.3 hypothetical protein compare
CA265_RS07085 +0.3 1.9 hypothetical protein compare
CA265_RS15495 +0.3 1.4 hypothetical protein compare
CA265_RS14155 +0.3 1.3 hypothetical protein compare
CA265_RS05945 +0.3 0.8 polysaccharide biosynthesis protein GtrA compare
CA265_RS13965 +0.3 1.4 hypothetical protein compare
CA265_RS12945 +0.3 2.0 hypothetical protein compare
CA265_RS16615 +0.3 0.8 hypothetical protein compare
CA265_RS11570 +0.3 1.1 hypothetical protein compare
CA265_RS07880 +0.3 1.7 transcriptional regulator compare
CA265_RS21115 +0.3 1.5 hypothetical protein compare
CA265_RS17865 +0.3 1.7 hypothetical protein compare
CA265_RS04645 +0.3 2.0 cation transporter compare
CA265_RS00270 +0.3 1.0 hypothetical protein compare
CA265_RS08150 +0.3 1.0 peptidase compare
CA265_RS05405 +0.3 1.2 hypothetical protein compare
CA265_RS24920 +0.3 1.0 hypothetical protein compare
CA265_RS01100 +0.3 1.7 transcriptional regulator compare
CA265_RS20395 +0.3 0.6 hypothetical protein compare
CA265_RS07100 +0.3 1.2 DUF4440 domain-containing protein compare
CA265_RS07940 +0.3 1.9 capsular biosynthesis protein compare
CA265_RS20425 +0.3 1.7 magnesium chelatase compare
CA265_RS05190 +0.3 1.4 hypothetical protein compare
CA265_RS23985 +0.3 1.8 gliding motility lipoprotein GldB compare


Specific Phenotypes

For 4 genes in this experiment

For stress Lomefloxacin hydrochloride in Pedobacter sp. GW460-11-11-14-LB5

For stress Lomefloxacin hydrochloride across organisms