Experiment set2IT036 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_2049 +3.0 8.7 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_3377 +2.3 1.2 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_1224 +2.0 15.9 sodium:dicarboxylate symporter (RefSeq) compare
Shew_2572 +1.8 7.7 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_3267 +1.8 8.6 sodium/hydrogen exchanger (RefSeq) compare
Shew_3660 +1.8 14.5 glutathione reductase (RefSeq) compare
Shew_3500 +1.7 3.8 putative endoribonuclease L-PSP (RefSeq) compare
Shew_2642 +1.7 3.9 flavodoxin (RefSeq) compare
Shew_1601 +1.6 2.6 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_0296 +1.6 1.3 heat shock protein Hsp20 (RefSeq) compare
Shew_1202 +1.5 7.8 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1341 +1.4 3.9 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_0127 +1.4 4.7 LexA repressor (RefSeq) compare
Shew_1819 +1.4 3.5 GntR family transcriptional regulator (RefSeq) compare
Shew_1092 +1.4 7.4 amino acid carrier protein (RefSeq) compare
Shew_1518 +1.3 1.8 hypothetical protein (RefSeq) compare
Shew_1014 +1.3 1.3 XRE family transcriptional regulator (RefSeq) compare
Shew_2320 +1.3 6.5 RNA methyltransferase (RefSeq) compare
Shew_3273 +1.3 4.8 hypothetical protein (RefSeq) compare
Shew_1058 +1.3 6.8 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_1050 +1.3 4.3 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_2061 +1.2 1.7 radical SAM domain-containing protein (RefSeq) compare
Shew_0462 +1.2 1.3 hypothetical protein (RefSeq) compare
Shew_3295 +1.2 8.1 AFG1 family ATPase (RefSeq) compare
Shew_2646 +1.2 1.1 hypothetical protein (RefSeq) compare
Shew_3442 +1.2 2.6 hypothetical protein (RefSeq) compare
Shew_0828 +1.2 1.2 LysR family transcriptional regulator (RefSeq) compare
Shew_3682 +1.1 8.0 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_3681 +1.1 8.9 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0799 +1.1 2.4 MarR family transcriptional regulator (RefSeq) compare
Shew_0450 +1.1 3.1 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_0343 +1.1 1.5 hypothetical protein (RefSeq) compare
Shew_3063 +1.1 1.8 glycine cleavage system protein H (RefSeq) compare
Shew_3388 +1.1 0.7 hypothetical protein (RefSeq) compare
Shew_1602 +1.1 2.0 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_3710 tdh +1.1 6.1 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_0459 +1.1 3.7 PAS/PAC sensor hybrid histidine kinase (RefSeq) compare
Shew_0421 +1.0 1.7 phage shock protein C, PspC (RefSeq) compare
Shew_3432 pdhR +1.0 2.3 transcriptional regulator PdhR (RefSeq) compare
Shew_1782 +1.0 5.9 MarR family transcriptional regulator (RefSeq) compare
Shew_1186 +1.0 2.5 transcriptional regulator NrdR (RefSeq) compare
Shew_2153 +1.0 1.3 LysR family transcriptional regulator (RefSeq) compare
Shew_1657 sucC +1.0 1.2 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_3131 +1.0 5.5 poly(A) polymerase (RefSeq) compare
Shew_2402 +1.0 1.0 ABC transporter-related protein (RefSeq) compare
Shew_3336 +1.0 1.7 MarR family transcriptional regulator (RefSeq) compare
Shew_1223 +0.9 1.0 hypothetical protein (RefSeq) compare
Shew_2429 +0.9 1.0 hypothetical protein (RefSeq) compare
Shew_3064 gcvT +0.9 7.3 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_3487 pyrE +0.9 3.5 orotate phosphoribosyltransferase (RefSeq) compare
Shew_1812 +0.9 5.3 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_1731 +0.9 0.7 histidine triad (HIT) protein (RefSeq) compare
Shew_1865 +0.9 3.1 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_1714 +0.9 1.8 alpha/beta hydrolase fold (RefSeq) compare
Shew_1995 +0.9 1.4 PP-loop domain-containing protein (RefSeq) compare
Shew_1514 upp +0.9 2.9 uracil phosphoribosyltransferase (RefSeq) compare
Shew_3689 +0.9 1.7 hypothetical protein (RefSeq) compare
Shew_2895 +0.9 2.6 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_2367 +0.9 1.3 hypothetical protein (RefSeq) compare
Shew_1432 +0.9 1.4 ferredoxin-type protein NapF (RefSeq) compare
Shew_0722 +0.9 1.0 hypothetical protein (RefSeq) compare
Shew_1078 +0.9 5.8 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_2573 +0.9 4.5 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_2906 +0.9 1.1 hypothetical protein (RefSeq) compare
Shew_2406 +0.9 1.6 AraC family transcriptional regulator (RefSeq) compare
Shew_0570 +0.9 0.8 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) compare
Shew_2589 +0.8 1.4 hypothetical protein (RefSeq) compare
Shew_1992 +0.8 2.8 hypothetical protein (RefSeq) compare
Shew_2389 +0.8 3.2 hypothetical protein (RefSeq) compare
Shew_2558 +0.8 2.6 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_1820 prpB +0.8 3.5 2-methylisocitrate lyase (RefSeq) compare
Shew_1931 +0.8 1.1 alkylphosphonate utilization operon protein PhnA (RefSeq) compare
Shew_0755 +0.8 1.4 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_0584 +0.8 1.0 hypothetical protein (RefSeq) compare
Shew_2115 +0.8 4.4 lytic transglycosylase, catalytic (RefSeq) compare
Shew_2668 +0.8 4.2 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_1298 guaA +0.8 5.1 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_0057 +0.8 2.6 cytoplasmic chaperone TorD family protein (RefSeq) compare
Shew_0220 +0.8 3.7 phosphoglycolate phosphatase (RefSeq) compare
Shew_1713 +0.8 1.1 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_3709 +0.8 5.3 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_0763 +0.8 4.0 putative PAS/PAC sensor protein (RefSeq) compare
Shew_3378 +0.8 0.9 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_1673 fabG +0.8 0.8 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Shew_3537 +0.8 1.6 hypothetical protein (RefSeq) compare
Shew_1563 +0.8 3.5 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_3673 +0.8 3.0 hypothetical protein (RefSeq) compare
Shew_0500 +0.8 1.9 hypothetical protein (RefSeq) compare
Shew_1227 +0.8 1.1 glutamate--cysteine ligase (RefSeq) compare
Shew_2837 +0.8 0.6 transcription elongation factor GreA (RefSeq) compare
Shew_0827 +0.7 0.9 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1257 +0.7 2.5 DNA repair protein RadC (RefSeq) compare
Shew_3265 +0.7 1.3 CutA1 divalent ion tolerance protein (RefSeq) compare
Shew_2458 +0.7 0.7 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_R0076 +0.7 0.9 tRNA-Asn (RefSeq) compare
Shew_2571 +0.7 4.4 propionyl-CoA carboxylase (RefSeq) compare
Shew_0620 +0.7 1.2 ion transport 2 domain-containing protein (RefSeq) compare
Shew_1867 +0.7 2.6 hypothetical protein (RefSeq) compare
Shew_2644 +0.7 1.7 hypothetical protein (RefSeq) compare
Shew_1023 +0.7 2.4 hypothetical protein (RefSeq) compare
Shew_1059 +0.7 1.4 hypothetical protein (RefSeq) compare
Shew_0718 +0.7 2.3 cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq) compare
Shew_2666 +0.7 4.2 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_2667 +0.7 4.5 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_0434 +0.7 2.1 hypothetical protein (RefSeq) compare
Shew_3240 +0.7 1.9 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_1313 +0.7 1.9 TetR family transcriptional regulator (RefSeq) compare
Shew_2544 +0.7 1.1 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_2884 +0.7 1.1 glycine cleavage system regulatory protein-like protein (RefSeq) compare
Shew_0678 +0.7 1.7 protoporphyrinogen oxidase (RefSeq) compare
Shew_2994 +0.7 2.2 CopY family transcriptional regulator (RefSeq) compare
Shew_2199 +0.7 2.0 histidinol-phosphate aminotransferase (RefSeq) compare
Shew_2665 +0.7 5.4 beta-ketoacyl synthase (RefSeq) compare
Shew_3498 rpoZ +0.7 1.9 DNA-directed RNA polymerase subunit omega (RefSeq) compare
Shew_3431 aceE +0.7 4.0 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_2241 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_0098 +0.6 3.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1295 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_0994 +0.6 3.4 KfrAs (RefSeq) compare
Shew_1797 +0.6 1.0 paraquat-inducible protein A (RefSeq) compare
Shew_1281 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_3695 +0.6 1.0 cytidyltransferase-like protein (RefSeq) compare
Shew_0695 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_2121 +0.6 1.3 diguanylate cyclase (RefSeq) compare
Shew_2723 +0.6 2.0 NUDIX hydrolase (RefSeq) compare
Shew_0534 +0.6 2.1 major facilitator transporter (RefSeq) compare
Shew_0097 +0.6 3.8 two component transcriptional regulator (RefSeq) compare
Shew_3193 +0.6 4.7 endonuclease/exonuclease/phosphatase (RefSeq) compare
Shew_2453 +0.6 0.8 hypothetical protein (RefSeq) compare
Shew_1356 +0.6 2.1 flagellin domain-containing protein (RefSeq) compare
Shew_2890 +0.6 0.8 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_0594 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_2025 +0.6 2.2 leucine-responsive transcriptional regulator (RefSeq) compare
Shew_2664 +0.6 3.3 transcriptional regulator, putative (RefSeq) compare
Shew_0226 +0.6 2.0 hypothetical protein (RefSeq) compare
Shew_2494 +0.6 1.4 phage shock protein C, PspC (RefSeq) compare
Shew_0136 +0.6 2.9 stearoyl-CoA 9-desaturase (RefSeq) compare
Shew_0206 +0.6 3.7 argininosuccinate lyase (RefSeq) compare
Shew_3062 +0.6 4.1 glycine dehydrogenase (RefSeq) compare
Shew_0438 +0.6 0.5 GumN family protein (RefSeq) compare
Shew_2957 +0.6 1.9 hypothetical protein (RefSeq) compare
Shew_3598 +0.6 0.6 AsnC family transcriptional regulator (RefSeq) compare
Shew_0782 +0.6 1.3 DNA-binding transcriptional regulator AsnC (RefSeq) compare
Shew_2652 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_1677 +0.6 1.6 leucyl aminopeptidase (RefSeq) compare
Shew_1173 +0.6 1.9 hypothetical protein (RefSeq) compare
Shew_0223 +0.6 2.5 hypothetical protein (RefSeq) compare
Shew_3051 +0.6 2.3 cupin 2 domain-containing protein (RefSeq) compare
Shew_0614 +0.6 2.2 cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq) compare
Shew_2059 +0.6 2.5 hypothetical protein (RefSeq) compare
Shew_1644 +0.6 0.5 DSBA oxidoreductase (RefSeq) compare
Shew_0854 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_3772 +0.6 0.8 thioesterase superfamily protein (RefSeq) compare
Shew_2444 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_0086 +0.5 4.7 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_2148 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_2043 +0.5 0.9 cation diffusion facilitator family transporter (RefSeq) compare
Shew_1455 +0.5 0.5 dual specificity protein phosphatase (RefSeq) compare
Shew_1929 +0.5 2.3 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_1776 +0.5 2.0 acetolactate synthase 3 catalytic subunit (RefSeq) compare
Shew_3683 +0.5 1.8 extracellular solute-binding protein (RefSeq) compare
Shew_1300 +0.5 1.9 lytic transglycosylase, catalytic (RefSeq) compare
Shew_1213 +0.5 0.8 RpoD family RNA polymerase sigma factor (RefSeq) compare
Shew_2751 rdgC +0.5 1.6 recombination associated protein (RefSeq) compare
Shew_0383 +0.5 2.6 malate dehydrogenase (RefSeq) compare
Shew_2481 +0.5 2.0 porin (RefSeq) compare
Shew_0091 +0.5 3.8 molybdopterin biosynthesis MoaE (RefSeq) compare
Shew_1932 cls +0.5 2.1 cardiolipin synthetase (RefSeq) compare
Shew_0585 +0.5 2.1 cAMP-regulatory protein (RefSeq) compare
Shew_3687 +0.5 3.5 molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq) compare
Shew_1994 +0.5 1.0 universal stress protein UspE (RefSeq) compare
Shew_2883 +0.5 1.0 BolA family protein (RefSeq) compare
Shew_0571 +0.5 0.9 cytochrome b/b6 domain-containing protein (RefSeq) compare
Shew_3483 dut +0.5 0.5 deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq) compare
Shew_2654 queF +0.5 1.2 7-cyano-7-deazaguanine reductase (RefSeq) compare
Shew_3080 +0.5 2.0 thiol:disulfide interchange protein, putative (RefSeq) compare
Shew_2155 +0.5 1.6 4-hydroxyphenylpyruvate dioxygenase (RefSeq) compare
Shew_1521 +0.5 1.4 OmpA/MotB domain-containing protein (RefSeq) compare
Shew_2643 +0.5 0.7 pseudouridylate synthase (RefSeq) compare
Shew_3225 +0.5 1.8 glutathione synthetase (RefSeq) compare
Shew_2154 +0.5 1.7 homogentisate 1,2-dioxygenase (RefSeq) compare
Shew_1562 +0.5 1.4 pseudouridylate synthase (RefSeq) compare
Shew_1845 +0.5 1.2 lysine exporter protein LysE/YggA (RefSeq) compare
Shew_2112 +0.5 1.4 ribonuclease H (RefSeq) compare
Shew_3271 +0.5 2.9 galactokinase (RefSeq) compare
Shew_1511 +0.5 1.0 UMP phosphatase (RefSeq) compare
Shew_1122 +0.5 2.9 hypothetical protein (RefSeq) compare
Shew_1287 +0.5 1.4 hypothetical protein (RefSeq) compare
Shew_0888 +0.5 2.7 no description compare
Shew_1071 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_0414 +0.5 2.6 ABC-2 type transporter (RefSeq) compare
Shew_0054 +0.5 2.3 hypothetical protein (RefSeq) compare
Shew_2052 +0.5 1.3 TetR family transcriptional regulator (RefSeq) compare
Shew_2708 +0.5 1.0 Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) compare
Shew_3625 +0.5 1.3 sodium:dicarboxylate symporter (RefSeq) compare
Shew_0487 +0.5 0.9 redox-active disulfide protein 2 (RefSeq) compare
Shew_0797 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_1021 +0.5 3.0 peptidase M23B (RefSeq) compare
Shew_3443 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_0613 +0.5 1.6 cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments