Experiment set2IT036 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without LipoicAcid

200 most important genes:

  gene name fitness t score description  
BBR_RS18695 -7.7 -5.3 PRD domain-containing protein compare
BBR_RS11205 -7.4 -5.1 HPr family phosphocarrier protein compare
BBR_RS11210 -7.2 -8.6 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS11025 -6.6 -7.8 aspartate-semialdehyde dehydrogenase compare
BBR_RS17990 -6.6 -9.0 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS11015 -6.2 -8.6 aspartate kinase compare
BBR_RS17375 -6.1 -5.9 amino acid ABC transporter ATP-binding protein compare
BBR_RS11020 -6.0 -10.9 ACT domain-containing protein compare
BBR_RS17615 -6.0 -8.2 phosphoserine phosphatase SerB compare
BBR_RS18735 -6.0 -17.2 hypothetical protein compare
BBR_RS17365 -6.0 -4.1 ABC transporter permease compare
BBR_RS18955 -5.9 -12.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS12235 -5.9 -1.8 hypothetical protein compare
BBR_RS17370 -5.9 -7.0 ABC transporter substrate-binding protein compare
BBR_RS18570 -5.8 -5.7 phosphoserine transaminase compare
BBR_RS19475 -5.8 -20.7 AEC family transporter compare
BBR_RS19535 -5.7 -10.3 homoserine kinase compare
BBR_RS12995 -5.7 -9.6 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS13040 -5.6 -3.9 CHAP domain-containing protein compare
BBR_RS16820 -5.6 -5.1 RNA polymerase sigma factor RpoE compare
BBR_RS10445 -5.6 -8.6 HlyC/CorC family transporter compare
BBR_RS14210 -5.5 -3.6 hypothetical protein compare
BBR_RS15680 -5.5 -6.5 succinate--CoA ligase subunit alpha compare
BBR_RS14215 -5.4 -5.1 peptidase compare
BBR_RS15675 -5.4 -5.3 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS12545 -5.3 -5.2 DUF4012 domain-containing protein compare
BBR_RS16970 -5.2 -5.1 phosphoglycerate dehydrogenase compare
BBR_RS10660 -5.2 -21.4 esterase compare
BBR_RS11720 -5.0 -9.1 DUF2469 domain-containing protein compare
BBR_RS14365 -5.0 -7.7 hypothetical protein compare
BBR_RS19240 -5.0 -17.5 LacI family transcriptional regulator compare
BBR_RS15070 -4.9 -3.4 endolytic transglycosylase MltG compare
BBR_RS18690 -4.8 -9.3 diacylglycerol kinase compare
BBR_RS18745 -4.8 -2.0 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS17290 -4.8 -12.4 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19760 -4.6 -2.7 polysaccharide ABC transporter ATPase compare
BBR_RS17460 -4.6 -10.4 TPM domain-containing protein compare
BBR_RS13035 -4.6 -3.0 ABC transporter permease compare
BBR_RS14070 -4.6 -5.4 threonine synthase compare
BBR_RS10620 -4.5 -8.1 phosphoprotein phosphatase compare
BBR_RS19470 -4.5 -23.7 succinyl-diaminopimelate desuccinylase compare
BBR_RS16750 -4.4 -3.1 ParA family protein compare
BBR_RS19555 -4.4 -27.9 diaminopimelate decarboxylase compare
BBR_RS16540 -4.3 -5.4 XRE family transcriptional regulator compare
BBR_RS11675 -4.3 -2.5 hypothetical protein compare
BBR_RS16155 -4.3 -11.1 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS15170 -4.3 -7.7 HlyC/CorC family transporter compare
BBR_RS19945 -4.3 -13.4 MarR family transcriptional regulator compare
BBR_RS13450 -4.2 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS14625 -4.2 -8.6 pyrroline-5-carboxylate reductase compare
BBR_RS16600 -4.2 -13.6 aconitate hydratase AcnA compare
BBR_RS18565 -4.2 -2.1 CHAP domain-containing protein compare
BBR_RS13700 -4.1 -14.3 diaminopimelate epimerase compare
BBR_RS17905 -3.9 -28.1 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS12900 -3.9 -3.7 DeoR/GlpR transcriptional regulator compare
BBR_RS16675 -3.9 -4.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS12460 -3.9 -9.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS19165 -3.8 -3.3 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS16610 -3.8 -6.9 hypothetical protein compare
BBR_RS11540 -3.8 -3.6 DUF1727 domain-containing protein compare
BBR_RS20885 -3.8 -1.1 hypothetical protein compare
BBR_RS13030 -3.8 -4.5 cell division ATP-binding protein FtsE compare
BBR_RS10625 -3.7 -3.2 FHA domain-containing protein compare
BBR_RS19700 -3.6 -24.0 ATP-dependent chaperone ClpB compare
BBR_RS18725 -3.6 -4.2 ribonuclease HI compare
BBR_RS13820 -3.5 -1.8 ATP-binding protein compare
BBR_RS19740 -3.5 -18.3 DUF2142 domain-containing protein compare
BBR_RS13070 -3.5 -1.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS14260 -3.5 -1.5 ABC transporter ATP-binding protein compare
BBR_RS15520 -3.4 -3.3 shikimate 5-dehydrogenase compare
BBR_RS19355 -3.3 -2.1 tRNA-Gly compare
BBR_RS19190 -3.2 -7.2 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS11515 -3.2 -17.6 ammonium transporter compare
BBR_RS13735 -3.2 -1.3 Lon protease compare
BBR_RS13370 -3.2 -3.6 phosphoribosylamine--glycine ligase compare
BBR_RS12660 -3.2 -9.5 EpsG family protein compare
BBR_RS15755 -3.1 -2.1 hypothetical protein compare
BBR_RS14370 -3.1 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS13455 -3.0 -4.1 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS16220 -3.0 -0.9 DNA cytosine methyltransferase compare
BBR_RS20465 -2.9 -9.3 chromosome partitioning protein compare
BBR_RS20775 -2.9 -2.0 DUF4230 domain-containing protein compare
BBR_RS16425 -2.9 -3.3 DUF3071 domain-containing protein compare
BBR_RS10740 -2.9 -2.5 tRNA-Gly compare
BBR_RS19120 -2.9 -10.5 helicase compare
BBR_RS16430 -2.9 -3.3 nucleotide pyrophosphatase compare
BBR_RS14280 -2.9 -2.7 dephospho-CoA kinase compare
BBR_RS16905 -2.9 -4.8 hypothetical protein compare
BBR_RS14265 -2.9 -6.2 Solute-binding protein of ABC transporter system for metals compare
BBR_RS19390 -2.8 -2.4 hypothetical protein compare
BBR_RS15080 -2.8 -2.9 chorismate synthase compare
BBR_RS20430 -2.8 -4.6 hypothetical protein compare
BBR_RS13300 -2.7 -1.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS10755 -2.7 -7.6 adenylosuccinate synthase compare
BBR_RS16670 -2.7 -4.1 hypothetical protein compare
BBR_RS13740 -2.7 -4.3 DUF3052 domain-containing protein compare
BBR_RS15845 -2.6 -1.1 hypothetical protein compare
BBR_RS12365 -2.6 -7.8 DUF177 domain-containing protein compare
BBR_RS19155 -2.6 -7.2 phosphate ABC transporter, permease protein PstA compare
BBR_RS14190 -2.5 -9.3 transcriptional regulator compare
BBR_RS19160 -2.5 -1.5 phosphate ABC transporter permease subunit PstC compare
BBR_RS20455 -2.5 -10.6 thioredoxin-disulfide reductase compare
BBR_RS20935 -2.5 -2.3 hypothetical protein compare
BBR_RS14665 -2.5 -7.7 MATE family efflux transporter compare
BBR_RS11680 -2.5 -10.4 23S rRNA methyltransferase compare
BBR_RS12760 -2.4 -7.7 hypothetical protein compare
BBR_RS19540 -2.4 -1.7 homoserine dehydrogenase compare
BBR_RS17360 -2.4 -4.2 amino acid ABC transporter permease compare
BBR_RS15180 -2.4 -8.9 long-chain fatty acid--CoA ligase compare
BBR_RS19125 -2.3 -10.1 hypothetical protein compare
BBR_RS19050 -2.3 -14.9 succinyldiaminopimelate transaminase compare
BBR_RS12640 -2.3 -10.3 glycosyl transferase compare
BBR_RS16975 -2.3 -3.8 transcriptional repressor NrdR compare
BBR_RS20920 -2.3 -2.9 hypothetical protein compare
BBR_RS14205 -2.2 -2.6 hypothetical protein compare
BBR_RS14075 -2.2 -7.1 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS13125 -2.2 -1.2 ABC transporter permease compare
BBR_RS17455 -2.2 -7.6 DNA-binding response regulator compare
BBR_RS10555 -2.2 -1.9 DUF3073 domain-containing protein compare
BBR_RS18215 -2.2 -6.5 AI-2E family transporter compare
BBR_RS19095 -2.2 -8.9 magnesium transporter compare
BBR_RS11505 -2.2 -12.5 TetR/AcrR family transcriptional regulator compare
BBR_RS12975 -2.2 -12.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS20450 -2.2 -14.1 murein biosynthesis integral membrane protein MurJ compare
BBR_RS13830 -2.2 -0.9 DUF4191 domain-containing protein compare
BBR_RS12980 -2.2 -12.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15355 -2.2 -5.0 DUF3800 domain-containing protein compare
BBR_RS12705 -2.2 -8.7 hypothetical protein compare
BBR_RS14330 -2.1 -1.5 glycogen debranching enzyme GlgX compare
BBR_RS13770 -2.1 -3.1 DNA repair protein RecO compare
BBR_RS12635 -2.1 -12.1 polysaccharide biosynthesis protein compare
BBR_RS13375 -2.1 -4.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS19445 -2.1 -15.2 glutamate 5-kinase compare
BBR_RS12905 -2.1 -2.3 galactose-1-phosphate uridylyltransferase compare
BBR_RS15880 -2.0 -3.0 hypothetical protein compare
BBR_RS17495 -2.0 -8.4 DUF58 domain-containing protein compare
BBR_RS12810 -2.0 -8.5 hypothetical protein compare
BBR_RS17865 -2.0 -3.8 MarR family transcriptional regulator compare
BBR_RS14655 -2.0 -3.9 AraC family transcriptional regulator compare
BBR_RS18050 -2.0 -3.0 threonylcarbamoyl-AMP synthase compare
BBR_RS16150 -2.0 -6.1 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS13510 -2.0 -5.3 LysR family transcriptional regulator compare
BBR_RS16965 -2.0 -1.3 ATP-dependent DNA helicase compare
BBR_RS16445 -1.9 -5.5 hypothetical protein compare
BBR_RS12700 -1.9 -7.2 hypothetical protein compare
BBR_RS13750 -1.9 -3.3 DivIVA domain-containing protein compare
BBR_RS19450 -1.9 -1.5 GTPase ObgE compare
BBR_RS19070 -1.9 -1.1 50S ribosomal protein L33 compare
BBR_RS19905 -1.9 -1.0 methionine--tRNA ligase compare
BBR_RS12770 -1.9 -1.9 hypothetical protein compare
BBR_RS17510 -1.9 -6.5 VWA domain-containing protein compare
BBR_RS17880 -1.9 -2.7 nucleotidyltransferase compare
BBR_RS12175 -1.8 -6.9 TetR/AcrR family transcriptional regulator compare
BBR_RS18700 -1.8 -3.0 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS19055 -1.8 -1.7 ferredoxin family protein compare
BBR_RS11500 -1.8 -8.9 glycosyltransferase family 2 protein compare
BBR_RS13420 -1.8 -1.5 DUF4230 domain-containing protein compare
BBR_RS16255 -1.8 -2.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS12630 -1.8 -9.8 glycosyltransferase family 1 protein compare
BBR_RS16555 -1.8 -0.7 DNA translocase FtsK compare
BBR_RS16240 -1.8 -3.3 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS16655 -1.7 -4.4 tyrosine recombinase XerC compare
BBR_RS12855 -1.7 -4.8 glycine cleavage system protein H compare
BBR_RS14885 -1.7 -3.8 cyclomaltodextrinase compare
BBR_RS15130 -1.7 -2.4 metal-sulfur cluster assembly factor compare
BBR_RS17500 -1.7 -5.4 hypothetical protein compare
BBR_RS15330 -1.7 -3.6 hypothetical protein compare
BBR_RS14230 -1.7 -3.9 HAMP domain-containing histidine kinase compare
BBR_RS13445 -1.7 -7.0 phosphoribosylformylglycinamidine synthase compare
BBR_RS12645 -1.7 -6.2 acyltransferase compare
BBR_RS12045 -1.7 -3.6 hypothetical protein compare
BBR_RS14240 -1.6 -4.8 1,4-alpha-glucan branching protein GlgB compare
BBR_RS17515 -1.6 -6.5 hypothetical protein compare
BBR_RS19290 -1.6 -5.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
BBR_RS11715 -1.6 -10.3 N-acetyltransferase compare
BBR_RS19265 -1.6 -8.8 pyrrolidone-carboxylate peptidase compare
BBR_RS17720 -1.6 -7.1 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS19260 -1.6 -11.1 hypothetical protein compare
BBR_RS17505 -1.6 -8.2 VWA domain-containing protein compare
BBR_RS20930 -1.6 -1.8 hypothetical protein compare
BBR_RS17860 -1.6 -9.5 ABC transporter ATP-binding protein compare
BBR_RS17490 -1.6 -9.1 MoxR family ATPase compare
BBR_RS18375 -1.6 -7.6 ATP-dependent helicase compare
BBR_RS19745 -1.6 -10.9 LTA synthase family protein compare
BBR_RS19645 -1.6 -6.3 RNA degradosome polyphosphate kinase compare
BBR_RS12710 -1.6 -2.6 hypothetical protein compare
BBR_RS18555 -1.5 -6.3 NlpC/P60 family protein compare
BBR_RS20795 -1.5 -1.5 cystathionine gamma-lyase compare
BBR_RS14540 -1.5 -2.8 Na+/H+ antiporter NhaA compare
BBR_RS15335 -1.5 -2.9 hypothetical protein compare
BBR_RS11470 -1.5 -1.0 6-phosphogluconolactonase compare
BBR_RS20460 -1.5 -3.8 chromosome partitioning protein ParB compare
BBR_RS10900 -1.5 -1.0 molecular chaperone DnaK compare
BBR_RS12650 -1.5 -7.1 polysaccharide pyruvyl transferase family protein compare
BBR_RS19755 -1.5 -8.0 glycosyl transferase compare
BBR_RS12755 -1.5 -9.6 DUF4365 domain-containing protein compare
BBR_RS15360 -1.5 -3.4 hypothetical protein compare
BBR_RS20690 -1.5 -2.5 hypothetical protein compare
BBR_RS12775 -1.5 -3.7 hypothetical protein compare
BBR_RS15085 -1.5 -1.0 3-dehydroquinate synthase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout experiments

For nutrient dropout no LipoicAcid across organisms