Experiment set2IT035 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00645 -6.0 -4.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS06260 -6.0 -5.8 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS00235 -5.9 -22.5 hypothetical protein compare
MMJJ_RS03055 -5.7 -3.1 hypothetical protein compare
MMJJ_RS03630 -5.6 -13.7 AMP phosphorylase compare
MMJJ_RS08080 -5.5 -7.5 TIGR00300 family protein compare
MMJJ_RS04475 -5.4 -5.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS05535 -5.3 -13.3 hypothetical protein compare
MMJJ_RS04595 -5.3 -5.0 hypothetical protein compare
MMJJ_RS06270 -5.3 -3.7 dethiobiotin synthase compare
MMJJ_RS00580 -5.2 -2.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS04485 -5.2 -10.5 riboflavin synthase compare
MMJJ_RS06600 -5.2 -2.8 DUF555 domain-containing protein compare
MMJJ_RS03065 -5.1 -15.1 CBS domain-containing protein compare
MMJJ_RS05065 -5.0 -4.7 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS04800 -5.0 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06375 -5.0 -3.5 UbiX family flavin prenyltransferase compare
MMJJ_RS05155 -5.0 -6.0 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06265 -5.0 -15.5 8-amino-7-oxononanoate synthase compare
MMJJ_RS01810 -5.0 -2.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS02045 -5.0 -2.9 molybdenum cofactor guanylyltransferase compare
MMJJ_RS07720 -4.9 -2.4 UPF0058 family protein compare
MMJJ_RS03230 -4.9 -3.4 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS03800 -4.9 -13.0 aldolase compare
MMJJ_RS04685 -4.9 -5.8 carbamoyltransferase HypF compare
MMJJ_RS04145 -4.9 -9.9 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS09375 -4.8 -2.0 hypothetical protein compare
MMJJ_RS05575 -4.7 -3.3 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03170 -4.7 -10.0 DUF5612 domain-containing protein compare
MMJJ_RS08625 -4.7 -3.2 magnesium/cobalt transporter CorA compare
MMJJ_RS07950 -4.7 -3.0 4Fe-4S binding protein compare
MMJJ_RS02090 -4.6 -3.2 tyramine--L-glutamate ligase compare
MMJJ_RS08155 -4.6 -3.2 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS04200 -4.6 -6.3 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03150 -4.6 -4.5 2-phospho-L-lactate transferase compare
MMJJ_RS06155 -4.6 -4.5 phosphatidylglycerophosphatase A compare
MMJJ_RS02200 -4.6 -8.8 chorismate pyruvate-lyase family protein compare
MMJJ_RS03125 -4.6 -3.1 GMC oxidoreductase compare
MMJJ_RS07980 -4.5 -14.6 biotin synthase BioB compare
MMJJ_RS04155 -4.5 -3.1 hypothetical protein compare
MMJJ_RS06750 -4.5 -2.5 homoaconitase large subunit compare
MMJJ_RS08035 -4.5 -9.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS01935 -4.5 -3.1 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS07160 -4.5 -20.4 M20 family metallo-hydrolase compare
MMJJ_RS01350 -4.4 -5.2 sodium:proton antiporter compare
MMJJ_RS06695 -4.4 -2.9 amidohydrolase compare
MMJJ_RS04150 -4.4 -3.3 DUF5379 domain-containing protein compare
MMJJ_RS04050 -4.4 -1.8 dihydroneopterin aldolase family protein compare
MMJJ_RS04970 -4.4 -2.1 DUF655 domain-containing protein compare
MMJJ_RS06805 -4.3 -2.6 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS04565 -4.3 -4.6 sirohydrochlorin nickelochelatase compare
MMJJ_RS03620 -4.3 -6.6 DUF2097 domain-containing protein compare
MMJJ_RS01750 -4.3 -2.5 ferrous iron transport protein A compare
MMJJ_RS08535 -4.3 -2.9 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS03270 -4.3 -2.1 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00560 -4.3 -4.1 homoisocitrate dehydrogenase compare
MMJJ_RS07245 -4.3 -4.2 amidohydrolase family protein compare
MMJJ_RS06040 -4.3 -2.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS04700 -4.2 -5.8 deoxyhypusine synthase compare
MMJJ_RS00450 -4.2 -2.0 DUF126 domain-containing protein compare
MMJJ_RS04650 -4.2 -2.9 nitrogenase iron protein compare
MMJJ_RS02985 -4.2 -14.7 MBL fold metallo-hydrolase compare
MMJJ_RS01880 -4.2 -2.7 RlmE family RNA methyltransferase compare
MMJJ_RS02920 -4.2 -2.0 30S ribosomal protein S27ae compare
MMJJ_RS04730 -4.2 -2.7 tyrosine decarboxylase MfnA compare
MMJJ_RS07430 -4.2 -4.3 ribonuclease VapC compare
MMJJ_RS03760 -4.2 -2.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS05590 -4.2 -2.0 homoserine dehydrogenase compare
MMJJ_RS02040 -4.2 -2.7 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06255 -4.1 -4.9 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS06715 -4.1 -10.4 lactaldehyde dehydrogenase compare
MMJJ_RS03895 -4.1 -3.6 hydrogenase expression/formation protein HypE compare
MMJJ_RS06625 -4.1 -2.0 pyruvate synthase subunit PorB compare
MMJJ_RS05445 -4.1 -2.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06930 -4.1 -2.4 type II methionyl aminopeptidase compare
MMJJ_RS03920 -4.0 -13.3 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS00600 -4.0 -3.3 hydroxymethylbilane synthase compare
MMJJ_RS03310 -4.0 -2.7 hypothetical protein compare
MMJJ_RS05650 -4.0 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS00270 -4.0 -2.7 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS08660 -4.0 -2.7 acetylornithine transaminase compare
MMJJ_RS07470 -4.0 -1.9 50S ribosome-binding GTPase compare
MMJJ_RS03615 -3.9 -2.5 cobalt-precorrin-8 methylmutase compare
MMJJ_RS03110 -3.9 -3.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS01600 -3.9 -2.5 radical SAM protein compare
MMJJ_RS08840 -3.9 -2.7 calcium/sodium antiporter compare
MMJJ_RS06240 -3.9 -2.3 dihydropteroate synthase-like protein compare
MMJJ_RS08850 -3.9 -2.3 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS06510 -3.9 -3.2 LL-diaminopimelate aminotransferase compare
MMJJ_RS07190 -3.9 -2.7 RtcB family protein compare
MMJJ_RS06180 -3.9 -2.6 tryptophan--tRNA ligase compare
MMJJ_RS04995 -3.8 -6.3 Tfx family DNA-binding protein compare
MMJJ_RS00275 -3.8 -2.1 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS01870 -3.8 -2.1 methanogenesis marker 15 protein compare
MMJJ_RS06175 -3.8 -2.1 DUF1743 domain-containing protein compare
MMJJ_RS06220 -3.8 -4.5 polyamine aminopropyltransferase compare
MMJJ_RS07000 -3.8 -1.8 TrkH family potassium uptake protein compare
MMJJ_RS00205 -3.8 -6.2 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS08095 -3.8 -2.6 cobyric acid synthase CobQ compare
MMJJ_RS03190 -3.8 -2.6 phosphopyruvate hydratase compare
MMJJ_RS09135 -3.8 -10.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06215 -3.7 -3.6 agmatinase compare
MMJJ_RS08010 -3.7 -8.9 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06700 -3.7 -5.6 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS05995 -3.7 -2.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS05935 -3.7 -2.0 Era-like GTP-binding protein compare
MMJJ_RS01755 -3.7 -2.4 ferrous iron transport protein B compare
MMJJ_RS04975 -3.7 -2.0 glycosyltransferase family 4 protein compare
MMJJ_RS05810 -3.7 -3.6 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06225 -3.7 -2.0 adenosylmethionine decarboxylase compare
MMJJ_RS03670 -3.7 -3.6 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05415 -3.6 -2.0 hypothetical protein compare
MMJJ_RS04980 -3.6 -6.1 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07350 -3.6 -3.8 4Fe-4S binding protein compare
MMJJ_RS03785 -3.6 -2.3 hypothetical protein compare
MMJJ_RS03840 -3.6 -2.5 DHH family phosphoesterase compare
MMJJ_RS05380 -3.6 -1.2 hypothetical protein compare
MMJJ_RS00570 -3.6 -2.1 ribonuclease P compare
MMJJ_RS00125 -3.6 -2.3 KEOPS complex subunit Cgi121 compare
MMJJ_RS03005 -3.6 -3.4 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS09190 -3.6 -2.1 tryptophan synthase subunit beta compare
MMJJ_RS04680 -3.5 -10.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS00355 -3.5 -3.2 ribonuclease P protein component 4 compare
MMJJ_RS06485 -3.5 -2.4 phosphoglycerate kinase compare
MMJJ_RS03865 -3.5 -1.4 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS01690 -3.5 -3.4 methanogenesis marker 12 protein compare
MMJJ_RS00425 -3.5 -3.3 hypothetical protein compare
MMJJ_RS06840 -3.5 -2.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS08795 -3.5 -2.2 phosphoglucosamine mutase compare
MMJJ_RS06390 -3.4 -1.7 NADPH-dependent F420 reductase compare
MMJJ_RS07725 -3.4 -7.2 DNA primase DnaG compare
MMJJ_RS06875 -3.4 -1.8 hypothetical protein compare
MMJJ_RS05950 -3.4 -3.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07410 -3.4 -4.0 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS02035 -3.4 -6.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS00935 -3.4 -11.2 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS03580 -3.4 -3.0 TIGR00303 family protein compare
MMJJ_RS07375 -3.4 -11.2 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS00210 -3.3 -1.8 DUF530 family protein compare
MMJJ_RS05720 -3.3 -3.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS05610 -3.3 -3.9 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS07705 -3.3 -2.3 GTP-binding protein EngB compare
MMJJ_RS05070 -3.3 -2.4 DNA primase catalytic subunit PriS compare
MMJJ_RS06400 -3.3 -6.0 FumA C-terminus/TtdB family hydratase beta subunit compare
MMJJ_RS03965 -3.3 -2.4 DNA-directed RNA polymerase subunit L compare
MMJJ_RS02275 -3.3 -4.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05490 -3.3 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS08330 -3.3 -3.0 SufD family Fe-S cluster assembly protein compare
MMJJ_RS03660 -3.3 -3.8 DUF447 family protein compare
MMJJ_RS08320 -3.3 -1.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS00370 -3.3 -2.2 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS05620 -3.3 -3.9 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05780 -3.3 -3.1 flagellin compare
MMJJ_RS08020 -3.2 -8.7 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06250 -3.2 -2.1 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS05360 -3.2 -6.8 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS07945 -3.2 -3.2 4Fe-4S binding protein compare
MMJJ_RS07170 -3.2 -3.1 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS03115 -3.2 -7.7 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS03200 -3.2 -2.9 uroporphyrinogen-III synthase compare
MMJJ_RS01360 -3.2 -1.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS07455 -3.2 -7.2 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS08405 -3.1 -13.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03820 -3.1 -2.1 hydrogenase formation protein HypD compare
MMJJ_RS06910 -3.1 -3.5 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS08655 -3.1 -12.0 phospholipase D-like domain-containing protein compare
MMJJ_RS04520 -3.1 -5.6 coenzyme F430 synthase compare
MMJJ_RS06725 -3.1 -13.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS08250 -3.1 -6.1 hydrogenase maturation peptidase HycI compare
MMJJ_RS08925 -3.0 -10.6 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07155 -3.0 -10.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS03765 -3.0 -7.2 hypothetical protein compare
MMJJ_RS05765 -3.0 -1.0 flagellar protein E compare
MMJJ_RS09175 -3.0 -1.0 anthranilate synthase component I compare
MMJJ_RS08500 -3.0 -8.5 L-sulfolactate dehydrogenase compare
MMJJ_RS00215 -3.0 -2.4 CCA tRNA nucleotidyltransferase compare
MMJJ_RS03650 -3.0 -7.1 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS06490 -3.0 -2.6 methanogenesis marker 2 protein compare
MMJJ_RS06015 -3.0 -9.0 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS04675 -3.0 -7.7 thiamine pyrophosphate-binding protein compare
MMJJ_RS03815 -3.0 -2.4 nascent polypeptide-associated complex protein compare
MMJJ_RS06010 -3.0 -6.1 hypothetical protein compare
MMJJ_RS08055 -2.9 -7.5 methanogenesis marker 14 protein compare
MMJJ_RS03095 -2.9 -2.7 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05260 -2.9 -5.7 ATP-grasp domain-containing protein compare
MMJJ_RS03540 -2.9 -6.7 TIGR00289 family protein compare
MMJJ_RS05655 -2.9 -6.1 HisA/HisF family protein compare
MMJJ_RS06760 -2.9 -4.4 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS08000 -2.9 -10.9 HesA/MoeB/ThiF family protein compare
MMJJ_RS06020 -2.9 -6.9 hypothetical protein compare
MMJJ_RS05295 -2.9 -12.2 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS07785 -2.8 -1.8 fumarate reductase subunit A compare
MMJJ_RS03225 -2.8 -2.8 4Fe-4S binding protein compare
MMJJ_RS07975 -2.7 -7.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS05160 -2.7 -3.2 RNA-binding protein compare
MMJJ_RS00360 -2.7 -2.9 adenosylhomocysteinase compare
MMJJ_RS06025 -2.7 -13.8 4Fe-4S binding protein compare
MMJJ_RS02855 -2.7 -11.6 DEAD/DEAH box helicase compare
MMJJ_RS06030 -2.7 -4.5 4Fe-4S binding protein compare
MMJJ_RS06035 -2.7 -7.9 NADH-quinone oxidoreductase subunit B family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t2 experiments