Experiment set2IT035 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without FolicAcid

200 most important genes:

  gene name fitness t score description  
BBR_RS11210 -7.5 -7.3 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS18695 -7.2 -7.0 PRD domain-containing protein compare
BBR_RS17990 -6.7 -9.2 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS11205 -6.6 -6.1 HPr family phosphocarrier protein compare
BBR_RS11020 -6.5 -6.4 ACT domain-containing protein compare
BBR_RS16820 -6.5 -4.5 RNA polymerase sigma factor RpoE compare
BBR_RS17370 -6.4 -4.4 ABC transporter substrate-binding protein compare
BBR_RS10625 -6.3 -3.6 FHA domain-containing protein compare
BBR_RS11015 -6.3 -9.6 aspartate kinase compare
BBR_RS17375 -6.2 -6.1 amino acid ABC transporter ATP-binding protein compare
BBR_RS11025 -6.2 -16.9 aspartate-semialdehyde dehydrogenase compare
BBR_RS17365 -6.1 -4.2 ABC transporter permease compare
BBR_RS10660 -6.0 -27.6 esterase compare
BBR_RS12235 -6.0 -1.8 hypothetical protein compare
BBR_RS18735 -6.0 -19.4 hypothetical protein compare
BBR_RS19535 -5.9 -9.1 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS11720 -5.9 -8.1 DUF2469 domain-containing protein compare
BBR_RS18570 -5.8 -8.8 phosphoserine transaminase compare
BBR_RS12995 -5.7 -10.3 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS18955 -5.7 -15.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS19475 -5.6 -22.8 AEC family transporter compare
BBR_RS14210 -5.6 -3.6 hypothetical protein compare
BBR_RS17615 -5.6 -11.4 phosphoserine phosphatase SerB compare
BBR_RS10445 -5.6 -11.4 HlyC/CorC family transporter compare
BBR_RS15675 -5.6 -5.4 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS16970 -5.2 -6.2 phosphoglycerate dehydrogenase compare
BBR_RS15680 -5.2 -7.9 succinate--CoA ligase subunit alpha compare
BBR_RS13735 -5.1 -1.5 Lon protease compare
BBR_RS19355 -5.1 -2.5 tRNA-Gly compare
BBR_RS18690 -5.0 -9.0 diacylglycerol kinase compare
BBR_RS13030 -5.0 -3.4 cell division ATP-binding protein FtsE compare
BBR_RS15070 -4.9 -3.4 endolytic transglycosylase MltG compare
BBR_RS14070 -4.8 -4.7 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS13035 -4.7 -3.0 ABC transporter permease compare
BBR_RS19555 -4.7 -31.7 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS19760 -4.7 -2.7 polysaccharide ABC transporter ATPase compare
BBR_RS12545 -4.7 -7.0 DUF4012 domain-containing protein compare
BBR_RS13040 -4.7 -5.5 CHAP domain-containing protein compare
BBR_RS17290 -4.6 -11.5 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS17460 -4.6 -10.7 TPM domain-containing protein compare
BBR_RS19270 -4.5 -1.3 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS19240 -4.5 -16.2 LacI family transcriptional regulator compare
BBR_RS13700 -4.5 -15.2 diaminopimelate epimerase compare
BBR_RS13820 -4.5 -1.8 ATP-binding protein compare
BBR_RS19945 -4.3 -13.6 MarR family transcriptional regulator compare
BBR_RS14215 -4.2 -5.1 peptidase compare
BBR_RS14365 -4.2 -7.8 hypothetical protein compare
BBR_RS16430 -4.2 -4.1 nucleotide pyrophosphatase compare
BBR_RS14370 -4.1 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS13300 -4.1 -2.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS20465 -4.1 -9.5 chromosome partitioning protein compare
BBR_RS15080 -4.1 -2.8 chorismate synthase compare
BBR_RS15170 -4.0 -8.8 HlyC/CorC family transporter compare
BBR_RS10620 -4.0 -7.9 phosphoprotein phosphatase compare
BBR_RS11540 -3.9 -2.7 DUF1727 domain-containing protein compare
BBR_RS16155 -3.9 -10.5 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS19470 -3.9 -23.3 succinyl-diaminopimelate desuccinylase compare
BBR_RS19165 -3.9 -3.7 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS14625 -3.8 -9.6 pyrroline-5-carboxylate reductase compare
BBR_RS16675 -3.7 -4.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS16750 -3.7 -5.1 ParA family protein compare
BBR_RS15085 -3.6 -1.8 3-dehydroquinate synthase compare
BBR_RS19160 -3.6 -1.5 phosphate ABC transporter permease subunit PstC compare
BBR_RS19390 -3.6 -2.3 hypothetical protein compare
BBR_RS17905 -3.6 -27.2 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS15520 -3.5 -3.4 shikimate 5-dehydrogenase compare
BBR_RS16540 -3.5 -6.0 XRE family transcriptional regulator compare
BBR_RS12660 -3.5 -11.1 EpsG family protein compare
BBR_RS19700 -3.5 -23.1 ATP-dependent chaperone ClpB compare
BBR_RS13455 -3.5 -4.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS11515 -3.5 -19.2 ammonium transporter compare
BBR_RS14260 -3.5 -1.4 ABC transporter ATP-binding protein compare
BBR_RS19155 -3.4 -9.1 phosphate ABC transporter, permease protein PstA compare
BBR_RS12460 -3.4 -10.5 LacI family DNA-binding transcriptional regulator compare
BBR_RS11470 -3.3 -1.4 6-phosphogluconolactonase compare
BBR_RS10755 -3.3 -8.8 adenylosuccinate synthase compare
BBR_RS19740 -3.3 -18.9 DUF2142 domain-containing protein compare
BBR_RS20925 -3.3 -1.9 amino acid permease compare
BBR_RS16670 -3.3 -4.9 hypothetical protein compare
BBR_RS13450 -3.2 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS16955 -3.2 -3.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS18745 -3.2 -2.1 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS16425 -3.2 -3.9 DUF3071 domain-containing protein compare
BBR_RS16600 -3.2 -10.6 aconitate hydratase AcnA compare
BBR_RS13125 -3.0 -1.1 ABC transporter permease compare
BBR_RS19120 -3.0 -10.7 helicase compare
BBR_RS14660 -2.9 -3.3 transcriptional regulator compare
BBR_RS10555 -2.9 -2.3 DUF3073 domain-containing protein compare
BBR_RS14205 -2.9 -4.1 hypothetical protein compare
BBR_RS19190 -2.8 -9.2 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS13370 -2.8 -3.5 phosphoribosylamine--glycine ligase compare
BBR_RS15180 -2.8 -9.3 long-chain fatty acid--CoA ligase compare
BBR_RS13740 -2.8 -4.7 DUF3052 domain-containing protein compare
BBR_RS13910 -2.8 -1.6 arginine repressor compare
BBR_RS11675 -2.7 -2.4 hypothetical protein compare
BBR_RS18725 -2.7 -4.1 ribonuclease HI compare
BBR_RS15845 -2.7 -1.1 hypothetical protein compare
BBR_RS12760 -2.7 -7.9 hypothetical protein compare
BBR_RS12900 -2.6 -2.7 DeoR/GlpR transcriptional regulator compare
BBR_RS20955 -2.6 -1.5 hypothetical protein compare
BBR_RS20920 -2.6 -4.8 hypothetical protein compare
BBR_RS13750 -2.5 -2.3 DivIVA domain-containing protein compare
BBR_RS17360 -2.5 -4.2 amino acid ABC transporter permease compare
BBR_RS19540 -2.5 -1.7 homoserine dehydrogenase compare
BBR_RS19125 -2.5 -10.9 hypothetical protein compare
BBR_RS20430 -2.5 -5.2 hypothetical protein compare
BBR_RS15860 -2.4 -1.0 DUF2316 domain-containing protein compare
BBR_RS20910 -2.4 -2.1 DUF1829 domain-containing protein compare
BBR_RS12710 -2.4 -3.7 hypothetical protein compare
BBR_RS12045 -2.4 -5.8 hypothetical protein compare
BBR_RS12980 -2.4 -13.8 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12770 -2.4 -3.1 hypothetical protein compare
BBR_RS15090 -2.4 -1.0 type II 3-dehydroquinate dehydratase compare
BBR_RS11505 -2.4 -15.0 TetR/AcrR family transcriptional regulator compare
BBR_RS19445 -2.3 -16.5 glutamate 5-kinase compare
BBR_RS16845 -2.3 -1.9 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS11355 -2.3 -5.6 hypothetical protein compare
BBR_RS11680 -2.2 -10.5 23S rRNA methyltransferase compare
BBR_RS17495 -2.2 -8.9 DUF58 domain-containing protein compare
BBR_RS19095 -2.2 -9.3 magnesium transporter compare
BBR_RS14330 -2.2 -1.5 glycogen debranching enzyme GlgX compare
BBR_RS20935 -2.2 -3.4 hypothetical protein compare
BBR_RS16255 -2.2 -2.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS16905 -2.1 -3.8 hypothetical protein compare
BBR_RS12810 -2.1 -7.8 hypothetical protein compare
BBR_RS14075 -2.1 -7.0 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS15300 -2.1 -3.9 peroxiredoxin compare
BBR_RS12635 -2.1 -12.4 polysaccharide biosynthesis protein compare
BBR_RS12905 -2.1 -2.8 galactose-1-phosphate uridylyltransferase compare
BBR_RS17515 -2.1 -5.3 hypothetical protein compare
BBR_RS12705 -2.1 -9.6 hypothetical protein compare
BBR_RS20450 -2.1 -13.5 murein biosynthesis integral membrane protein MurJ compare
BBR_RS12175 -2.1 -7.9 TetR/AcrR family transcriptional regulator compare
BBR_RS17135 -2.1 -1.1 RluA family pseudouridine synthase compare
BBR_RS14275 -2.1 -1.2 30S ribosomal protein S1 compare
BBR_RS13445 -2.1 -8.7 phosphoribosylformylglycinamidine synthase compare
BBR_RS16610 -2.1 -3.5 hypothetical protein compare
BBR_RS15880 -2.1 -3.5 hypothetical protein compare
BBR_RS19050 -2.0 -14.2 succinyldiaminopimelate transaminase compare
BBR_RS10905 -2.0 -3.2 nucleotide exchange factor GrpE compare
BBR_RS14280 -2.0 -2.5 dephospho-CoA kinase compare
BBR_RS12645 -2.0 -6.1 acyltransferase compare
BBR_RS13070 -2.0 -1.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS11500 -2.0 -9.2 glycosyltransferase family 2 protein compare
BBR_RS15915 -2.0 -0.8 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS19905 -2.0 -1.0 methionine--tRNA ligase compare
BBR_RS19395 -2.0 -2.8 hypothetical protein compare
BBR_RS14265 -2.0 -5.4 Solute-binding protein of ABC transporter system for metals compare
BBR_RS12640 -1.9 -10.2 glycosyl transferase compare
BBR_RS12975 -1.9 -11.2 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS18215 -1.9 -7.4 AI-2E family transporter compare
BBR_RS14665 -1.9 -6.0 MATE family efflux transporter compare
BBR_RS16940 -1.9 -5.2 hypothetical protein compare
BBR_RS18555 -1.9 -7.0 NlpC/P60 family protein compare
BBR_RS15850 -1.8 -3.5 ASCH domain-containing protein compare
BBR_RS13510 -1.8 -5.7 LysR family transcriptional regulator compare
BBR_RS18375 -1.8 -8.1 ATP-dependent helicase compare
BBR_RS14190 -1.8 -6.2 transcriptional regulator compare
BBR_RS19755 -1.8 -9.6 glycosyl transferase compare
BBR_RS12700 -1.8 -6.9 hypothetical protein compare
BBR_RS18050 -1.8 -2.7 threonylcarbamoyl-AMP synthase compare
BBR_RS18700 -1.7 -2.7 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS16975 -1.7 -3.4 transcriptional repressor NrdR compare
BBR_RS17865 -1.7 -5.0 MarR family transcriptional regulator compare
BBR_RS15805 -1.7 -4.8 prolipoprotein diacylglyceryl transferase compare
BBR_RS17505 -1.7 -8.7 VWA domain-containing protein compare
BBR_RS11770 -1.7 -3.3 chorismate mutase compare
BBR_RS13840 -1.7 -4.0 DUF3043 domain-containing protein compare
BBR_RS12365 -1.7 -5.1 DUF177 domain-containing protein compare
BBR_RS15370 -1.7 -2.7 macro domain-containing protein compare
BBR_RS14870 -1.7 -3.1 histidine phosphatase family protein compare
BBR_RS15755 -1.6 -1.1 hypothetical protein compare
BBR_RS16150 -1.6 -6.5 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS20775 -1.6 -1.4 DUF4230 domain-containing protein compare
BBR_RS17490 -1.6 -9.0 MoxR family ATPase compare
BBR_RS16965 -1.6 -1.5 ATP-dependent DNA helicase compare
BBR_RS15305 -1.6 -3.9 hypothetical protein compare
BBR_RS17455 -1.6 -5.4 DNA-binding response regulator compare
BBR_RS10900 -1.6 -1.1 molecular chaperone DnaK compare
BBR_RS12630 -1.6 -9.1 glycosyltransferase family 1 protein compare
BBR_RS20840 -1.5 -2.5 hypothetical protein compare
BBR_RS13830 -1.5 -0.8 DUF4191 domain-containing protein compare
BBR_RS12855 -1.5 -3.9 glycine cleavage system protein H compare
BBR_RS11715 -1.5 -10.0 N-acetyltransferase compare
BBR_RS19795 -1.5 -11.0 hypothetical protein compare
BBR_RS14230 -1.5 -4.4 HAMP domain-containing histidine kinase compare
BBR_RS16080 -1.5 -2.2 DUF1287 domain-containing protein compare
BBR_RS17860 -1.5 -8.9 ABC transporter ATP-binding protein compare
BBR_RS16695 -1.5 -3.5 PadR family transcriptional regulator compare
BBR_RS15130 -1.5 -1.3 metal-sulfur cluster assembly factor compare
BBR_RS16985 -1.4 -2.6 transcriptional repressor LexA compare
BBR_RS12665 -1.4 -7.9 acyltransferase compare
BBR_RS12835 -1.4 -4.5 thioredoxin compare
BBR_RS19260 -1.4 -9.9 hypothetical protein compare
BBR_RS17720 -1.4 -7.5 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS19745 -1.4 -9.8 LTA synthase family protein compare
BBR_RS12650 -1.4 -7.7 polysaccharide pyruvyl transferase family protein compare
BBR_RS10255 -1.4 -2.5 chromosomal replication initiator protein DnaA compare
BBR_RS19070 -1.4 -0.9 50S ribosomal protein L33 compare
BBR_RS13405 -1.4 -2.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout experiments

For nutrient dropout no FolicAcid across organisms