Experiment set2IT034 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
AO353_02100 -4.8 -3.3 phosphoglycolate phosphatase compare
AO353_12365 -4.4 -3.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_05115 -4.1 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12090 -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12520 -4.1 -9.8 glutamate synthase compare
AO353_20695 -4.0 -6.6 O-succinylhomoserine sulfhydrylase compare
AO353_20625 -3.9 -3.8 3-isopropylmalate dehydratase compare
AO353_12085 -3.8 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12070 -3.8 -8.1 imidazoleglycerol-phosphate dehydratase compare
AO353_08185 -3.8 -10.0 methionine biosynthesis protein MetW compare
AO353_07290 -3.8 -10.8 mannose-1-phosphate guanylyltransferase compare
AO353_08475 -3.8 -8.7 phosphoserine phosphatase compare
AO353_20665 -3.7 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_14505 -3.7 -11.4 ketol-acid reductoisomerase compare
AO353_07220 -3.7 -7.9 anthranilate synthase compare
AO353_13070 -3.7 -8.9 phosphoserine phosphatase compare
AO353_02685 -3.7 -4.3 phosphoribosylglycinamide formyltransferase compare
AO353_02070 -3.6 -7.3 prephenate dehydratase compare
AO353_08345 -3.6 -9.0 dihydroxy-acid dehydratase compare
AO353_12515 -3.6 -20.7 glutamate synthase compare
AO353_07230 -3.5 -16.3 anthranilate synthase compare
AO353_20540 -3.5 -9.0 aromatic amino acid aminotransferase compare
AO353_12075 -3.5 -8.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_11850 -3.5 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_26900 -3.5 -7.3 glycerate kinase compare
AO353_08180 -3.5 -13.3 homoserine O-acetyltransferase compare
AO353_08685 -3.5 -8.9 N-acetylglutamate synthase compare
AO353_02075 -3.5 -11.0 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20635 -3.4 -12.2 3-isopropylmalate dehydrogenase compare
AO353_20620 -3.4 -7.5 isopropylmalate isomerase compare
AO353_05110 -3.4 -11.2 histidinol dehydrogenase compare
AO353_04180 -3.3 -5.9 glycerol kinase compare
AO353_07210 -3.2 -6.5 indole-3-glycerol-phosphate synthase compare
AO353_04155 -3.1 -12.6 ornithine carbamoyltransferase compare
AO353_13165 -3.1 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_02250 -3.1 -4.6 chorismate synthase compare
AO353_14370 -3.1 -7.3 glucose-6-phosphate isomerase compare
AO353_14400 -3.1 -4.6 Fis family transcriptional regulator compare
AO353_10710 -3.0 -5.4 tryptophan synthase subunit beta compare
AO353_00310 -3.0 -9.8 transaldolase compare
AO353_10025 -3.0 -15.5 pyruvate carboxylase subunit B compare
AO353_10670 -3.0 -8.1 shikimate dehydrogenase compare
AO353_14115 -3.0 -6.2 gamma-glutamyl kinase compare
AO353_07215 -2.9 -8.5 anthranilate phosphoribosyltransferase compare
AO353_12360 -2.9 -9.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_20175 -2.9 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_24130 -2.9 -4.3 hypothetical protein compare
AO353_07155 -2.9 -8.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10035 -2.9 -10.7 LysR family transcriptional regulator compare
AO353_14500 -2.9 -7.1 acetolactate synthase 3 regulatory subunit compare
AO353_05130 -2.9 -2.7 anti-anti-sigma factor compare
AO353_15925 -2.8 -12.9 2-isopropylmalate synthase compare
AO353_04105 -2.8 -9.1 argininosuccinate synthase compare
AO353_12115 -2.7 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08510 -2.7 -5.7 3-phosphoglycerate dehydrogenase compare
AO353_09240 -2.7 -3.6 acetylglutamate kinase compare
AO353_08015 -2.7 -7.7 5,10-methylenetetrahydrofolate reductase compare
AO353_19060 -2.6 -5.7 CysB family transcriptional regulator compare
AO353_10030 -2.6 -11.4 pyruvate carboxylase subunit A compare
AO353_03580 -2.5 -4.9 ATP-dependent DNA helicase RuvB compare
AO353_09000 -2.5 -5.7 argininosuccinate lyase compare
AO353_06495 -2.5 -6.8 gamma-glutamyl phosphate reductase compare
AO353_14495 -2.5 -11.0 acetolactate synthase 3 catalytic subunit compare
AO353_01915 -2.4 -1.8 GlcG protein compare
AO353_05715 -2.4 -10.1 lactate utilization protein B/C compare
AO353_08885 -2.3 -15.4 polyphosphate kinase compare
AO353_05720 -2.3 -12.0 4Fe-4S ferredoxin conserved
AO353_04175 -2.3 -3.1 glycerol uptake facilitator GlpF compare
AO353_00620 -2.3 -3.6 cytochrome C oxidase Cbb3 compare
AO353_14990 -2.2 -3.2 hypothetical protein compare
AO353_05705 -2.2 -8.5 oxidoreductase conserved
AO353_12500 -2.2 -2.1 shikimate kinase compare
AO353_04190 -2.2 -2.8 glycerol-3-phosphate dehydrogenase compare
AO353_09040 -2.2 -2.5 diaminopimelate epimerase compare
AO353_00750 -2.1 -4.6 GntR family transcriptional regulator compare
AO353_05080 -2.0 -10.8 sulfate adenylyltransferase compare
AO353_02320 -2.0 -7.1 allantoinase compare
AO353_05710 -2.0 -11.8 (Fe-S)-binding protein conserved
AO353_06515 -2.0 -8.6 hypothetical protein conserved
AO353_08780 -2.0 -7.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_10705 -2.0 -4.8 tryptophan synthase subunit alpha compare
AO353_05700 -2.0 -9.6 L-lactate permease conserved
AO353_08165 -2.0 -3.6 pyrroline-5-carboxylate reductase compare
AO353_11165 -1.9 -9.9 hypothetical protein compare
AO353_03020 -1.9 -7.8 arginine N-succinyltransferase compare
AO353_03425 -1.9 -9.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_18540 -1.9 -3.2 pseudouridine synthase compare
AO353_22800 -1.8 -3.6 sulfite reductase compare
AO353_06520 -1.8 -6.5 murein hydrolase transporter LrgA conserved
AO353_05075 -1.8 -9.5 adenylylsulfate kinase compare
AO353_00825 -1.8 -3.8 porin compare
AO353_03360 -1.8 -7.9 glucose-6-phosphate dehydrogenase compare
AO353_03420 -1.7 -4.8 phosphogluconate dehydratase compare
AO353_04365 -1.7 -5.3 recombinase XerD compare
AO353_12420 -1.7 -3.7 predicted FeS cluster maintenance protein (from data) compare
AO353_03775 -1.7 -7.7 pyruvate kinase compare
AO353_13140 -1.7 -5.3 tRNA dimethylallyltransferase compare
AO353_06045 -1.6 -6.4 exodeoxyribonuclease V subunit beta compare
AO353_00610 -1.6 -2.9 cytochrome C oxidase Cbb3 compare
AO353_15250 -1.6 -3.5 cytochrome B compare
AO353_05625 -1.6 -2.0 transcription elongation factor GreA compare
AO353_27685 -1.5 -4.6 cold-shock protein compare
AO353_04355 -1.5 -2.4 homoserine dehydrogenase compare
AO353_00330 -1.5 -7.2 hypothetical protein compare
AO353_02720 -1.4 -5.2 cysteine synthase compare
AO353_05135 -1.4 -7.3 toluene tolerance protein compare
AO353_09045 -1.4 -2.2 hypothetical protein compare
AO353_12510 -1.4 -8.6 cell division protein compare
AO353_14420 -1.4 -3.5 molecular chaperone DnaK compare
AO353_06040 -1.4 -3.1 exodeoxyribonuclease V subunit alpha compare
AO353_07355 -1.4 -4.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_12105 -1.4 -5.6 peptidase S41 compare
AO353_04565 -1.4 -4.8 nucleoid-associated protein compare
AO353_03235 -1.4 -7.4 glutamate-pyruvate aminotransferase compare
AO353_05150 -1.4 -4.3 ABC transporter ATP-binding protein compare
AO353_08485 -1.3 -9.1 threonine dehydratase compare
AO353_03590 -1.3 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_13640 -1.3 -4.0 histidine kinase compare
AO353_05105 -1.3 -7.8 histidinol-phosphate aminotransferase compare
AO353_19030 -1.3 -7.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_22305 -1.3 -2.6 LysR family transcriptional regulator compare
AO353_03630 -1.3 -8.4 porin compare
AO353_14775 -1.3 -4.8 hypothetical protein compare
AO353_06050 -1.2 -5.0 exodeoxyribonuclease V subunit gamma compare
AO353_18505 -1.2 -2.2 translation initiation factor 2 compare
AO353_16980 -1.2 -2.7 isochorismatase compare
AO353_16425 -1.2 -1.9 Fe-S metabolism protein SufE compare
AO353_20170 -1.2 -3.8 trigger factor compare
AO353_10040 -1.2 -6.2 transcriptional regulator compare
AO353_03015 -1.2 -3.7 arginine N-succinyltransferase compare
AO353_01550 -1.2 -4.0 hypothetical protein compare
AO353_05140 -1.2 -5.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_16940 -1.1 -4.2 deoxycytidine triphosphate deaminase compare
AO353_27650 -1.1 -3.7 cell division protein FtsK compare
AO353_01080 -1.1 -6.6 hypothetical protein compare
AO353_02270 -1.1 -4.1 isochorismatase compare
AO353_19090 -1.1 -2.0 MarR family transcriptional regulator compare
AO353_17405 -1.1 -4.1 glutamine amidotransferase compare
AO353_20585 -1.1 -2.4 TetR family transcriptional regulator compare
AO353_03430 -1.1 -2.5 methylglyoxal synthase compare
AO353_27680 -1.1 -4.9 ATP-dependent Clp protease adaptor ClpS compare
AO353_11770 -1.1 -1.8 molecular chaperone Hsp33 compare
AO353_17410 -1.1 -1.7 arylsulfate sulfotransferase compare
AO353_02040 -1.1 -2.5 integration host factor subunit beta compare
AO353_19145 -1.0 -3.0 protease HtpX compare
AO353_07315 -1.0 -2.0 rRNA methyltransferase compare
AO353_09285 -1.0 -6.2 reactive intermediate/imine deaminase compare
AO353_00495 -1.0 -1.9 DNA topoisomerase I compare
AO353_01410 -1.0 -2.8 ribonuclease E compare
AO353_07610 -1.0 -1.0 hypothetical protein compare
AO353_00490 -1.0 -2.4 PasA protein compare
AO353_03715 -1.0 -1.5 H-NS histone compare
AO353_10455 -1.0 -1.6 tRNA modification GTPase MnmE compare
AO353_04220 -1.0 -4.2 chemotaxis protein CheY compare
AO353_01685 -1.0 -1.5 hypothetical protein compare
AO353_18715 -1.0 -1.6 histidine kinase compare
AO353_02065 -1.0 -4.7 aspartate aminotransferase compare
AO353_20410 -1.0 -2.2 hypothetical protein compare
AO353_15905 -1.0 -4.2 outer membrane protein assembly factor BamB compare
AO353_19530 -1.0 -1.1 quinohemoprotein amine dehydrogenase compare
AO353_26090 -0.9 -2.0 hypothetical protein compare
AO353_07075 -0.9 -3.0 elongation factor Tu compare
AO353_14595 -0.9 -5.4 carbonate dehydratase compare
AO353_20095 -0.9 -3.7 histidine kinase compare
AO353_05145 -0.9 -3.8 ABC transporter permease compare
AO353_02810 -0.9 -4.7 histidine kinase compare
AO353_09050 -0.9 -2.4 recombinase XerC compare
AO353_21630 -0.9 -2.3 precorrin-4 C11-methyltransferase compare
AO353_11530 -0.9 -5.1 diguanylate cyclase compare
AO353_03585 -0.9 -2.0 ATP-dependent DNA helicase RuvA compare
AO353_13225 -0.9 -2.3 50S ribosomal protein L9 compare
AO353_21400 -0.9 -1.9 conjugal transfer protein TraR compare
AO353_24535 -0.9 -2.0 hypothetical protein compare
AO353_03615 -0.9 -2.0 cold-shock protein compare
AO353_15295 -0.9 -3.4 division/cell wall cluster transcriptional repressor MraZ compare
AO353_17945 -0.8 -1.9 cyclic nucleotide-binding protein compare
AO353_05535 -0.8 -2.1 tRNA-Thr compare
AO353_07525 -0.8 -6.2 biotin synthase compare
AO353_13005 -0.8 -5.9 channel protein TolC compare
AO353_08505 -0.8 -5.6 FAD-linked oxidase compare
AO353_14405 -0.8 -5.3 ATPase compare
AO353_27410 -0.8 -2.1 hypothetical protein compare
AO353_11730 -0.8 -4.8 glutamate--cysteine ligase compare
AO353_08980 -0.8 -2.0 heme biosynthesis operon protein HemX compare
AO353_20685 -0.8 -4.3 colicin V production CvpA compare
AO353_09890 -0.8 -3.1 phosphate ABC transporter ATP-binding protein compare
AO353_10085 -0.8 -1.8 pyridoxamine kinase compare
AO353_26405 -0.8 -3.2 hypothetical protein compare
AO353_11750 -0.8 -1.9 ATPase compare
AO353_05800 -0.8 -3.1 hypothetical protein compare
AO353_06460 -0.8 -3.8 hypothetical protein compare
AO353_09315 -0.8 -4.7 LysR family transcriptional regulator compare
AO353_05690 -0.8 -2.0 SsrA-binding protein compare
AO353_06850 -0.8 -2.8 MFS transporter compare
AO353_10435 -0.8 -4.7 chromosome partitioning protein compare
AO353_00650 -0.8 -1.8 cytochrome biogenesis protein compare
AO353_15830 -0.8 -2.2 transcriptional regulator compare
AO353_20185 -0.8 -3.6 DNA-binding protein compare
AO353_16605 -0.8 -5.7 protein-L-isoaspartate O-methyltransferase compare
AO353_22645 -0.8 -1.8 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Glycerol in Pseudomonas fluorescens FW300-N2E3

For carbon source Glycerol across organisms