Experiment set2IT034 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Glycerol carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_21830 +1.7 14.1 chemotaxis protein CheY compare
AO353_02735 +1.7 15.0 chemotaxis protein CheY compare
AO353_19340 +1.2 10.4 amino acid ABC transporter substrate-binding protein compare
AO353_26525 +1.2 3.2 hypothetical protein compare
AO353_05695 +1.1 9.2 transcriptional regulator PdhR compare
AO353_11155 +1.0 9.0 thioesterase compare
AO353_26390 +1.0 2.0 glyoxalase compare
AO353_09250 +1.0 3.0 exodeoxyribonuclease III compare
AO353_16615 +1.0 8.4 RNA polymerase sigma factor RpoS compare
AO353_18500 +0.9 3.0 chemotaxis protein CheY compare
AO353_13920 +0.8 3.0 dihydroxyacetone kinase compare
AO353_23785 +0.8 2.2 hypothetical protein compare
AO353_02570 +0.8 2.4 hypothetical protein compare
AO353_04325 +0.8 2.0 hypothetical protein compare
AO353_11160 +0.8 4.6 GntR family transcriptional regulator compare
AO353_01055 +0.8 6.7 AraC family transcriptional regulator compare
AO353_12765 +0.7 2.6 transcriptional regulator compare
AO353_18925 +0.7 2.2 ATPase compare
AO353_19565 +0.7 2.5 vanillate O-demethylase oxidoreductase VanB compare
AO353_20590 +0.7 1.9 hydrolase compare
AO353_10510 +0.7 1.5 benzoate transporter compare
AO353_01065 +0.7 4.5 acetyl-CoA acetyltransferase compare
AO353_08060 +0.7 2.1 hypothetical protein compare
AO353_12540 +0.7 2.0 hypothetical protein compare
AO353_19335 +0.7 4.9 TetR family transcriptional regulator compare
AO353_19070 +0.7 1.9 hypothetical protein compare
AO353_10320 +0.7 1.4 hypothetical protein compare
AO353_13100 +0.7 1.2 GTPase RsgA compare
AO353_11945 +0.7 1.0 4-oxalocrotonate tautomerase compare
AO353_05010 +0.6 1.8 HopJ type III effector protein compare
AO353_20925 +0.6 1.3 hypothetical protein compare
AO353_00255 +0.6 2.7 hypothetical protein compare
AO353_28555 +0.6 1.6 LysR family transcriptional regulator compare
AO353_13420 +0.6 1.2 hypothetical protein compare
AO353_18745 +0.6 2.0 flagellar biosynthesis protein flip compare
AO353_00185 +0.6 1.2 phage tail protein compare
AO353_15260 +0.6 3.6 stringent starvation protein A compare
AO353_01070 +0.6 5.6 poly(R)-hydroxyalkanoic acid synthase compare
AO353_01795 +0.6 1.3 hypothetical protein compare
AO353_15210 +0.6 2.4 Zn-dependent hydrolase compare
AO353_00105 +0.6 1.5 hypothetical protein compare
AO353_23405 +0.6 1.3 hypothetical protein compare
AO353_27430 +0.6 2.4 hypothetical protein compare
AO353_05125 +0.6 2.9 BolA family transcriptional regulator compare
AO353_15280 +0.6 2.6 hypothetical protein compare
AO353_24600 +0.6 1.7 hypothetical protein compare
AO353_01060 +0.6 4.0 3-ketoacyl-ACP reductase compare
AO353_06540 +0.6 1.4 hypothetical protein compare
AO353_13130 +0.6 1.9 N-acetylmuramoyl-L-alanine amidase compare
AO353_12880 +0.6 1.5 ADP-heptose--LPS heptosyltransferase compare
AO353_22985 +0.6 1.8 hypothetical protein compare
AO353_19810 +0.6 1.8 filamentous hemagglutinin compare
AO353_28330 +0.5 2.0 carbon-nitrogen hydrolase compare
AO353_22475 +0.5 2.1 alkaline phosphatase compare
AO353_08645 +0.5 2.1 transporter compare
AO353_21290 +0.5 1.4 hypothetical protein compare
AO353_05490 +0.5 2.8 transcriptional regulator compare
AO353_03290 +0.5 1.3 peptide deformylase compare
AO353_28640 +0.5 2.1 hypothetical protein compare
AO353_12580 +0.5 1.4 type II secretory protein PulK compare
AO353_16355 +0.5 2.5 TetR family transcriptional regulator compare
AO353_12790 +0.5 1.1 hypothetical protein compare
AO353_13740 +0.5 2.4 MFS transporter compare
AO353_27855 +0.5 1.4 MarR family transcriptional regulator compare
AO353_08775 +0.5 0.9 cell division protein ZapA compare
AO353_13300 +0.5 1.3 LOG family protein compare
AO353_15290 +0.5 3.5 methyltransferase compare
AO353_18465 +0.5 2.6 phosphohydrolase compare
AO353_03515 +0.5 0.8 cold-shock protein compare
AO353_06710 +0.5 1.2 riboflavin synthase subunit alpha compare
AO353_26520 +0.5 1.6 TetR family transcriptional regulator compare
AO353_23350 +0.5 1.6 hypothetical protein compare
AO353_24170 +0.5 2.4 hypothetical protein compare
AO353_13660 +0.5 3.2 tRNA-dihydrouridine synthase B compare
AO353_05240 +0.5 1.6 rod shape-determining protein MreD compare
AO353_25850 +0.5 2.5 peptidase C45 compare
AO353_16655 +0.5 2.0 phage baseplate protein compare
AO353_02520 +0.5 1.5 sodium transporter compare
AO353_17935 +0.5 1.3 hypothetical protein compare
AO353_12210 +0.5 2.7 hypothetical protein compare
AO353_26935 +0.5 1.2 LysR family transcriptional regulator compare
AO353_24985 +0.5 1.5 L-seryl-tRNA(Sec) selenium transferase compare
AO353_17445 +0.5 1.6 hypothetical protein compare
AO353_03710 +0.5 1.1 formyltetrahydrofolate deformylase compare
AO353_09560 +0.5 0.9 type VI secretion protein compare
AO353_25260 +0.5 1.7 hypothetical protein compare
AO353_09765 +0.5 2.1 hypothetical protein compare
AO353_21100 +0.5 1.6 DNA-binding protein compare
AO353_19025 +0.5 3.8 acetyltransferase compare
AO353_00120 +0.5 1.5 DNA-binding protein compare
AO353_25585 +0.4 1.1 argininosuccinate lyase compare
AO353_10375 +0.4 2.4 XRE family transcriptional regulator compare
AO353_29165 +0.4 1.6 fructose-bisphosphate aldolase compare
AO353_25035 +0.4 2.2 integrase compare
AO353_24745 +0.4 1.0 hypothetical protein compare
AO353_29280 +0.4 1.5 hypothetical protein compare
AO353_24120 +0.4 1.3 hypothetical protein compare
AO353_00975 +0.4 1.7 hypothetical protein compare
AO353_03510 +0.4 1.4 glycine cleavage system protein T compare
AO353_23860 +0.4 1.6 xanthine permease XanP compare
AO353_00860 +0.4 1.9 EstX protein compare
AO353_23895 +0.4 1.9 phospholipase compare
AO353_18840 +0.4 1.7 flagellar biosynthesis protein FlhB compare
AO353_07415 +0.4 2.3 AsnC family transcriptional regulator compare
AO353_25910 +0.4 2.0 Fructokinase (EC 2.7.1.4) (from data) compare
AO353_22825 +0.4 2.9 ATPase compare
AO353_09945 +0.4 2.0 LysR family transcriptional regulator compare
AO353_21545 +0.4 2.0 type VI secretion effector protein (Hcp) compare
AO353_08855 +0.4 2.1 GntR family transcriptional regulator compare
AO353_01595 +0.4 1.0 Flp pilus assembly protein CpaB compare
AO353_13915 +0.4 2.4 hypothetical protein compare
AO353_19270 +0.4 2.6 LuxR family transcriptional regulator compare
AO353_18675 +0.4 2.4 flagellar hook-basal body protein FliE compare
AO353_12045 +0.4 2.2 iron transporter compare
AO353_07445 +0.4 0.9 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_12535 +0.4 1.6 hypothetical protein compare
AO353_00235 +0.4 1.3 transcriptional regulator compare
AO353_11050 +0.4 1.7 hypothetical protein compare
AO353_04240 +0.4 0.9 chemotaxis protein CheW compare
AO353_19020 +0.4 1.4 hypothetical protein compare
AO353_18985 +0.4 1.4 hypothetical protein compare
AO353_26055 +0.4 1.1 hypothetical protein compare
AO353_00400 +0.4 2.5 citrate-proton symporter compare
AO353_18335 +0.4 1.3 hypothetical protein compare
AO353_21625 +0.4 1.0 Fe/S biogenesis protein NfuA compare
AO353_13885 +0.4 2.1 bile acid:sodium symporter compare
AO353_02275 +0.4 1.6 hypothetical protein compare
AO353_26230 +0.4 1.9 hypothetical protein compare
AO353_03120 +0.4 1.8 hypothetical protein compare
AO353_12670 +0.4 1.4 glycosyl transferase compare
AO353_24870 +0.4 1.6 hypothetical protein compare
AO353_22035 +0.4 1.8 pyridoxine 5'-phosphate oxidase compare
AO353_22675 +0.4 2.1 hypothetical protein compare
AO353_17850 +0.4 0.9 SAM-dependent methyltransferase compare
AO353_06205 +0.4 2.0 hypothetical protein compare
AO353_19750 +0.4 0.9 diaminopimelate epimerase compare
AO353_16055 +0.4 1.5 hypothetical protein compare
AO353_00665 +0.4 1.3 adenine phosphoribosyltransferase compare
AO353_24045 +0.4 1.8 iron ABC transporter ATP-binding protein compare
AO353_26385 +0.4 1.9 hypothetical protein compare
AO353_04090 +0.4 1.1 leucyl-tRNA synthetase compare
AO353_27540 +0.4 1.8 TetR family transcriptional regulator compare
AO353_27890 +0.4 2.3 RpiR family transcriptional regulator compare
AO353_15535 +0.4 1.9 hypothetical protein compare
AO353_21935 +0.4 0.9 nitrite reductase compare
AO353_14915 +0.4 1.1 (2Fe-2S)-binding protein compare
AO353_26800 +0.4 2.5 hydrogen cyanide synthase compare
AO353_27445 +0.4 1.5 hypothetical protein compare
AO353_27710 +0.4 0.6 DNA repair protein compare
AO353_00755 +0.4 1.9 hypothetical protein compare
AO353_13865 +0.4 1.0 hypothetical protein compare
AO353_02860 +0.4 1.8 flagellar biosynthesis protein FlgB compare
AO353_06355 +0.4 1.3 thiamine-phosphate pyrophosphorylase compare
AO353_00455 +0.4 1.2 beta-hexosaminidase compare
AO353_08640 +0.4 1.4 hypothetical protein compare
AO353_22075 +0.4 1.5 hypothetical protein compare
AO353_15665 +0.4 1.1 chemotaxis protein CheY compare
AO353_28965 +0.4 1.5 hypothetical protein compare
AO353_23285 +0.4 1.3 hypothetical protein compare
AO353_23245 +0.4 0.8 DNA-3-methyladenine glycosylase compare
AO353_02995 +0.4 2.5 succinylglutamate desuccinylase compare
AO353_07105 +0.4 0.7 biotin--protein ligase compare
AO353_29160 +0.4 1.4 GTP pyrophosphokinase compare
AO353_01075 +0.4 1.7 hypothetical protein compare
AO353_12625 +0.4 1.5 hypothetical protein compare
AO353_23170 +0.4 1.2 short-chain dehydrogenase compare
AO353_00760 +0.4 1.1 hypothetical protein compare
AO353_21325 +0.4 2.0 patatin compare
AO353_19685 +0.4 1.2 alkylhydroperoxidase compare
AO353_02580 +0.4 3.2 Long-chain fatty acid transport protein compare
AO353_16345 +0.4 1.2 energy transducer TonB compare
AO353_13085 +0.4 1.3 histidine kinase compare
AO353_06730 +0.4 1.9 methyltransferase compare
AO353_12730 +0.4 1.7 hypothetical protein compare
AO353_27545 +0.3 1.9 hypothetical protein compare
AO353_04230 +0.3 1.4 chemotaxis protein CheW compare
AO353_00025 +0.3 1.6 phenazine biosynthesis protein PhzF compare
AO353_09290 +0.3 1.6 hypothetical protein compare
AO353_25645 +0.3 1.6 amino acid transporter compare
AO353_13595 +0.3 2.2 cobalt-precorrin-6A synthase compare
AO353_14005 +0.3 2.1 GntR family transcriptional regulator compare
AO353_22420 +0.3 1.4 histidine kinase compare
AO353_08675 +0.3 2.1 peroxidase compare
AO353_05810 +0.3 1.2 dehydrogenase compare
AO353_21365 +0.3 1.9 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
AO353_09415 +0.3 2.0 ClpV1 family T6SS ATPase compare
AO353_20065 +0.3 1.6 hypothetical protein compare
AO353_08005 +0.3 1.7 thioesterase compare
AO353_08960 +0.3 1.7 peptidylprolyl isomerase compare
AO353_21950 +0.3 1.8 AsnC family transcriptional regulator compare
AO353_09490 +0.3 1.3 hypothetical protein compare
AO353_12480 +0.3 2.0 pilus assembly protein PilN compare
AO353_04480 +0.3 1.4 NGG1p interacting factor NIF3 compare
AO353_02600 +0.3 0.9 alpha-ribazole phosphatase compare
AO353_02220 +0.3 0.6 hypothetical protein compare
AO353_19760 +0.3 1.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_05065 +0.3 1.8 phosphate acetyltransferase compare
AO353_07695 +0.3 1.2 electron transfer flavoprotein subunit beta compare
AO353_20315 +0.3 1.4 cytochrome B compare
AO353_14225 +0.3 2.4 laccase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Glycerol in Pseudomonas fluorescens FW300-N2E3

For carbon source Glycerol across organisms