Experiment set2IT033 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3842 -4.8 -3.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5006 -4.6 -5.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_77 -4.5 -3.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4596 -4.3 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4597 -4.2 -6.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5176 -4.0 -5.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3751 -4.0 -9.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2013 -3.9 -2.0 hypothetical protein compare
Pf6N2E2_3932 -3.8 -6.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5175 -3.7 -11.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4826 -3.7 -5.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4047 -3.7 -2.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4825 -3.7 -7.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3839 -3.7 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3782 -3.3 -4.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_63 -3.3 -5.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3248 -3.3 -5.0 Probable transmembrane protein compare
Pf6N2E2_4564 -3.2 -8.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3752 -3.2 -14.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3610 -3.2 -4.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5527 -3.1 -3.0 Cold shock protein CspC compare
Pf6N2E2_64 -3.1 -3.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3252 -3.1 -6.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4048 -3.1 -6.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5780 -3.0 -7.2 Periplasmic protease compare
Pf6N2E2_3253 -2.9 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2074 -2.9 -2.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5177 -2.9 -8.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4278 -2.8 -9.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3630 -2.8 -6.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2574 -2.8 -1.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_66 -2.7 -7.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3841 -2.7 -4.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5160 -2.6 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_71 -2.6 -5.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_1381 -2.6 -6.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2753 -2.6 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_4279 -2.6 -9.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3783 -2.5 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2885 -2.5 -5.5 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4206 -2.5 -1.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5943 -2.5 -2.2 hypothetical protein compare
Pf6N2E2_2674 -2.4 -1.8 FIG00953856: hypothetical protein compare
Pf6N2E2_3060 -2.4 -3.2 Outer membrane protein H precursor compare
Pf6N2E2_5014 -2.4 -1.7 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_1402 -2.4 -7.2 hypothetical protein compare
Pf6N2E2_4077 -2.3 -2.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2217 -2.3 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2894 -2.3 -4.8 N-acylglucosamine 2-epimerase (EC 5.1.3.8) conserved
Pf6N2E2_2503 -2.2 -2.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_282 -2.2 -1.8 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4372 -2.1 -4.0 FIG00460773: hypothetical protein compare
Pf6N2E2_3942 -2.1 -8.5 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_658 -2.1 -8.3 sensor histidine kinase compare
Pf6N2E2_3460 -2.0 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4752 -2.0 -10.1 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_3661 -2.0 -4.0 hypothetical protein compare
Pf6N2E2_3170 -2.0 -7.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5150 -1.9 -4.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2640 -1.9 -2.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5579 -1.8 -6.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_1400 -1.8 -9.2 Sensory box histidine kinase/response regulator compare
Pf6N2E2_2756 -1.8 -5.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2892 -1.8 -8.9 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_4362 -1.8 -2.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5316 -1.8 -1.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5219 -1.8 -7.5 FIG140336: TPR domain protein compare
Pf6N2E2_2895 -1.8 -6.1 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_2073 -1.7 -4.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3557 -1.7 -3.2 Chaperone-modulator protein CbpM compare
Pf6N2E2_3941 -1.7 -2.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3984 -1.7 -7.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3134 -1.7 -1.2 hypothetical protein compare
Pf6N2E2_5965 -1.7 -3.4 transcriptional regulator compare
Pf6N2E2_248 -1.6 -6.3 hypothetical protein compare
Pf6N2E2_3088 -1.6 -2.2 hypothetical protein compare
Pf6N2E2_5255 -1.6 -7.4 Outer membrane stress sensor protease DegS compare
Pf6N2E2_4009 -1.6 -6.7 GGDEF domain protein compare
Pf6N2E2_4611 -1.5 -3.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3062 -1.5 -3.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5156 -1.5 -1.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4759 -1.5 -9.0 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3940 -1.5 -6.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_595 -1.4 -2.7 Arsenical resistance operon repressor compare
Pf6N2E2_2896 -1.4 -2.2 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_3282 -1.4 -1.7 FIG005080: Possible exported protein compare
Pf6N2E2_4277 -1.4 -7.1 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_5499 -1.4 -1.4 hypothetical protein compare
Pf6N2E2_180 -1.4 -3.2 Transcriptional regulator, MerR family compare
Pf6N2E2_5761 -1.4 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3095 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_2438 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_5342 -1.3 -2.1 21 kDa hemolysin precursor compare
Pf6N2E2_4537 -1.3 -2.3 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_2586 -1.3 -1.3 Hpt domain protein compare
Pf6N2E2_5894 -1.3 -5.1 Putative threonine efflux protein compare
Pf6N2E2_2397 -1.3 -2.4 Two-component system response regulator QseB compare
Pf6N2E2_1596 -1.3 -1.8 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5243 -1.3 -1.1 hypothetical protein compare
Pf6N2E2_4710 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_4638 -1.3 -2.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3055 -1.3 -2.7 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_3835 -1.2 -2.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5727 -1.2 -4.2 FIG00955360: hypothetical protein compare
Pf6N2E2_5252 -1.2 -1.8 FIG00956396: hypothetical protein compare
Pf6N2E2_3271 -1.2 -2.0 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1834 -1.2 -2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5899 -1.2 -4.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1315 -1.2 -1.9 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_84 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_4417 -1.2 -2.6 Protein of unknown function DUF484 compare
Pf6N2E2_5728 -1.2 -3.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_1401 -1.2 -4.8 FIG00955631: hypothetical protein compare
Pf6N2E2_70 -1.2 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1056 -1.2 -0.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3260 -1.2 -3.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2891 -1.2 -6.9 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_649 -1.2 -2.1 General secretion pathway protein L compare
Pf6N2E2_2508 -1.2 -2.7 hypothetical protein compare
Pf6N2E2_4205 -1.1 -2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_302 -1.1 -3.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3833 -1.1 -2.6 hypothetical protein compare
Pf6N2E2_4987 -1.1 -0.8 MaoC-like domain protein compare
Pf6N2E2_6047 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_48 -1.1 -2.9 FIG00955661: hypothetical protein compare
Pf6N2E2_778 -1.1 -2.8 Probable lipoprotein signal peptide compare
Pf6N2E2_4742 -1.1 -2.5 Glutathione S-transferase family protein compare
Pf6N2E2_3840 -1.1 -2.5 FIG00956267: hypothetical protein compare
Pf6N2E2_309 -1.1 -0.9 FIG00957702: hypothetical protein compare
Pf6N2E2_1081 -1.1 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_3300 -1.0 -2.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_89 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_1797 -1.0 -1.8 Transcriptional regulator compare
Pf6N2E2_3470 -1.0 -4.1 hypothetical protein compare
Pf6N2E2_2018 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_3947 -1.0 -1.0 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_4479 -1.0 -2.2 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_5505 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_2465 -1.0 -2.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3659 -1.0 -3.3 Protein fixF compare
Pf6N2E2_519 -1.0 -3.3 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf6N2E2_4352 -1.0 -1.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_1288 -1.0 -1.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_2514 -1.0 -2.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_6065 -1.0 -1.7 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2752 -1.0 -4.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2518 -1.0 -2.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2893 -0.9 -3.1 hypothetical protein compare
Pf6N2E2_5862 -0.9 -1.4 Lipoprotein, putative compare
Pf6N2E2_1336 -0.9 -1.3 AraC family transcription regulator compare
Pf6N2E2_4545 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_933 -0.9 -2.8 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_3885 -0.9 -1.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_1824 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_3015 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_4749 -0.9 -2.4 DNA polymerase III epsilon subunit (EC 2.7.7.7) compare
Pf6N2E2_3349 -0.9 -1.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1932 -0.9 -2.6 Transcriptional regulator, IclR family compare
Pf6N2E2_3461 -0.9 -0.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2889 -0.9 -4.2 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_97 -0.9 -3.0 putataive branched-chain amino acid transport protein AzlC compare
Pf6N2E2_75 -0.9 -2.2 Colicin V production protein compare
Pf6N2E2_4566 -0.9 -3.7 LSU m5C1962 methyltransferase RlmI compare
Pf6N2E2_1116 -0.9 -1.3 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1433 -0.9 -2.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3516 -0.9 -1.5 Probable transmembrane protein compare
Pf6N2E2_4367 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_1676 -0.8 -1.4 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_3258 -0.8 -1.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4305 -0.8 -0.6 FIG00959590: hypothetical protein compare
Pf6N2E2_1656 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_3853 -0.8 -2.9 hypothetical protein compare
Pf6N2E2_3024 -0.8 -1.7 Phage tail fibers compare
Pf6N2E2_2097 -0.8 -2.7 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_3206 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_1743 -0.8 -1.7 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_2746 -0.8 -3.2 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_2675 -0.8 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_953 -0.8 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_4818 -0.8 -2.8 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_3514 -0.8 -1.9 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_1758 -0.8 -1.4 Transcriptional regulator, MarR family compare
Pf6N2E2_2496 -0.8 -1.4 FIG00956575: hypothetical protein compare
Pf6N2E2_3723 -0.8 -1.7 FIG022199: FAD-binding protein compare
Pf6N2E2_2890 -0.8 -3.4 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_522 -0.8 -2.0 Inositol transport system sugar-binding protein compare
Pf6N2E2_288 -0.8 -1.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3312 -0.8 -2.2 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_813 -0.8 -2.4 Response regulator compare
Pf6N2E2_178 -0.8 -0.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1895 -0.8 -2.8 PQQ-dependent oxidoreductase, gdhB family compare
Pf6N2E2_1403 -0.8 -1.7 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_5510 -0.8 -1.5 FIG00955324: hypothetical protein compare
Pf6N2E2_2904 -0.8 -2.0 Hypothetical protein DUF454 compare
Pf6N2E2_434 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_62 -0.8 -1.9 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3234 -0.8 -2.2 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_5768 -0.7 -2.0 DNA recombination-dependent growth factor C compare
Pf6N2E2_2459 -0.7 -0.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_2519 -0.7 -0.9 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Mannose in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Mannose across organisms