Experiment set2IT033 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Ethanol carbon source

200 most important genes:

  gene name fitness t score description  
AO353_22420 -3.6 -4.2 histidine kinase compare
AO353_20625 -3.5 -2.4 3-isopropylmalate dehydratase compare
AO353_22350 -3.3 -4.4 LuxR family transcriptional regulator compare
AO353_15295 -3.2 -6.4 division/cell wall cluster transcriptional repressor MraZ compare
AO353_02005 -3.2 -3.0 hypothetical protein compare
AO353_27735 -3.1 -6.9 isocitrate lyase compare
AO353_08185 -3.1 -7.8 methionine biosynthesis protein MetW compare
AO353_09235 -3.0 -5.4 phosphoglucomutase compare
AO353_12070 -3.0 -6.7 imidazoleglycerol-phosphate dehydratase compare
AO353_05115 -2.9 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_22375 -2.8 -3.8 cytochrome c-550 PedF compare
AO353_08180 -2.8 -10.1 homoserine O-acetyltransferase compare
AO353_20635 -2.8 -9.4 3-isopropylmalate dehydrogenase compare
AO353_13165 -2.8 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_02025 -2.7 -8.2 mannose-1-phosphate guanyltransferase compare
AO353_20665 -2.7 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20695 -2.7 -4.8 O-succinylhomoserine sulfhydrylase compare
AO353_12365 -2.7 -3.6 phosphoribosyl-AMP cyclohydrolase compare
AO353_08465 -2.7 -14.6 phosphoenolpyruvate-protein phosphotransferase compare
AO353_22355 -2.6 -7.5 multidrug ABC transporter permease conserved
AO353_20620 -2.6 -5.6 isopropylmalate isomerase compare
AO353_22385 -2.6 -10.5 dehydrogenase conserved
AO353_14220 -2.6 -1.8 ribosomal large subunit pseudouridine synthase D compare
AO353_20510 -2.6 -2.5 amidase compare
AO353_05225 -2.6 -13.3 hypothetical protein compare
AO353_01975 -2.6 -5.7 glycosyl transferase compare
AO353_12950 -2.6 -6.7 polymerase compare
AO353_12515 -2.5 -15.4 glutamate synthase compare
AO353_09045 -2.5 -2.7 hypothetical protein compare
AO353_12520 -2.5 -9.2 glutamate synthase compare
AO353_07210 -2.5 -4.8 indole-3-glycerol-phosphate synthase compare
AO353_03630 -2.5 -9.3 porin compare
AO353_07230 -2.5 -12.3 anthranilate synthase compare
AO353_08345 -2.5 -7.3 dihydroxy-acid dehydratase compare
AO353_07560 -2.4 -10.3 malate synthase G compare
AO353_08685 -2.4 -7.2 N-acetylglutamate synthase compare
AO353_20175 -2.4 -2.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_02710 -2.4 -7.4 (p)ppGpp synthetase compare
AO353_12075 -2.4 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12085 -2.4 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08510 -2.3 -4.2 3-phosphoglycerate dehydrogenase compare
AO353_14370 -2.3 -4.9 glucose-6-phosphate isomerase compare
AO353_06495 -2.3 -4.4 gamma-glutamyl phosphate reductase compare
AO353_07215 -2.3 -5.9 anthranilate phosphoribosyltransferase compare
AO353_14495 -2.3 -7.7 acetolactate synthase 3 catalytic subunit compare
AO353_10030 -2.3 -8.6 pyruvate carboxylase subunit A compare
AO353_11750 -2.3 -2.7 ATPase compare
AO353_27650 -2.3 -4.2 cell division protein FtsK compare
AO353_00310 -2.3 -7.4 transaldolase compare
AO353_02250 -2.3 -3.4 chorismate synthase compare
AO353_05110 -2.3 -8.4 histidinol dehydrogenase compare
AO353_22370 -2.2 -3.3 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_04155 -2.2 -9.2 ornithine carbamoyltransferase compare
AO353_14505 -2.2 -9.2 ketol-acid reductoisomerase compare
AO353_12090 -2.2 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_22360 -2.2 -2.6 ABC transporter ATP-binding protein compare
AO353_02075 -2.2 -8.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_22415 -2.2 -3.3 alcohol dehydrogenase compare
AO353_22365 -2.2 -5.8 hypothetical protein conserved
AO353_18890 -2.1 -4.9 cytochrome C compare
AO353_10710 -2.1 -4.3 tryptophan synthase subunit beta compare
AO353_01970 -2.1 -8.4 hypothetical protein compare
AO353_14775 -2.1 -4.4 hypothetical protein compare
AO353_08015 -2.1 -5.3 5,10-methylenetetrahydrofolate reductase compare
AO353_12115 -2.1 -2.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_29280 -2.1 -3.3 hypothetical protein compare
AO353_10025 -2.0 -10.8 pyruvate carboxylase subunit B compare
AO353_04105 -2.0 -6.2 argininosuccinate synthase compare
AO353_08885 -2.0 -12.4 polyphosphate kinase compare
AO353_03060 -2.0 -14.2 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) compare
AO353_09000 -2.0 -4.0 argininosuccinate lyase compare
AO353_04220 -2.0 -5.3 chemotaxis protein CheY compare
AO353_07290 -1.9 -7.7 mannose-1-phosphate guanylyltransferase compare
AO353_22380 -1.9 -5.4 amino acid ABC transporter substrate-binding protein conserved
AO353_03580 -1.9 -2.9 ATP-dependent DNA helicase RuvB compare
AO353_19055 -1.9 -6.7 universal stress protein UspA compare
AO353_01995 -1.9 -9.9 hypothetical protein compare
AO353_18780 -1.9 -5.5 cobyrinic acid a,c-diamide synthase compare
AO353_00430 -1.8 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_09040 -1.8 -1.7 diaminopimelate epimerase compare
AO353_13070 -1.8 -6.5 phosphoserine phosphatase compare
AO353_07155 -1.8 -5.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_01985 -1.8 -7.7 hypothetical protein compare
AO353_14500 -1.8 -4.9 acetolactate synthase 3 regulatory subunit compare
AO353_09240 -1.8 -2.9 acetylglutamate kinase compare
AO353_12940 -1.7 -5.7 glycosyl transferase compare
AO353_02940 -1.7 -2.8 DNA-binding protein compare
AO353_08995 -1.7 -9.1 chemotaxis protein CheY compare
AO353_07220 -1.7 -5.8 anthranilate synthase compare
AO353_02000 -1.7 -3.2 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_14115 -1.7 -4.9 gamma-glutamyl kinase compare
AO353_10705 -1.7 -3.3 tryptophan synthase subunit alpha compare
AO353_15925 -1.7 -8.2 2-isopropylmalate synthase compare
AO353_12105 -1.6 -4.6 peptidase S41 compare
AO353_22800 -1.6 -2.5 sulfite reductase compare
AO353_00495 -1.6 -2.1 DNA topoisomerase I compare
AO353_14595 -1.6 -6.4 carbonate dehydratase compare
AO353_15905 -1.6 -4.7 outer membrane protein assembly factor BamB compare
AO353_00460 -1.5 -2.5 TetR family transcriptional regulator compare
AO353_06045 -1.5 -4.7 exodeoxyribonuclease V subunit beta compare
AO353_14400 -1.5 -3.3 Fis family transcriptional regulator compare
AO353_12015 -1.5 -2.5 antitoxin compare
AO353_12500 -1.5 -1.4 shikimate kinase compare
AO353_18220 -1.5 -8.8 isocitrate dehydrogenase compare
AO353_11165 -1.5 -6.9 hypothetical protein compare
AO353_14590 -1.5 -1.5 serine kinase/phosphatase compare
AO353_23495 -1.4 -2.1 SAM-dependent methyltransferase compare
AO353_22945 -1.4 -8.2 glycogen branching protein compare
AO353_12935 -1.4 -2.7 glycosyltransferase compare
AO353_04175 -1.4 -2.5 glycerol uptake facilitator GlpF compare
AO353_06050 -1.4 -4.0 exodeoxyribonuclease V subunit gamma compare
AO353_01990 -1.4 -5.0 UDP-N-acetylglucosamine 2-epimerase compare
AO353_02010 -1.4 -4.8 glycosyl transferase family 1 compare
AO353_20200 -1.4 -2.9 peptidylprolyl isomerase compare
AO353_16835 -1.4 -2.0 LuxR family transcriptional regulator compare
AO353_10670 -1.4 -4.7 shikimate dehydrogenase compare
AO353_02555 -1.4 -8.0 histidine kinase compare
AO353_02070 -1.3 -4.7 prephenate dehydratase compare
AO353_15170 -1.3 -2.5 cytochrome D ubiquinol oxidase subunit III compare
AO353_06040 -1.3 -2.3 exodeoxyribonuclease V subunit alpha compare
AO353_07515 -1.3 -1.8 transporter compare
AO353_04340 -1.3 -2.1 hypothetical protein compare
AO353_13690 -1.3 -8.8 thiol:disulfide interchange protein compare
AO353_01550 -1.3 -4.1 hypothetical protein compare
AO353_27160 -1.3 -2.3 Pathogenicity locus compare
AO353_09785 -1.3 -2.4 hypothetical protein compare
AO353_19090 -1.3 -1.9 MarR family transcriptional regulator compare
AO353_06720 -1.3 -1.6 NrdR family transcriptional regulator compare
AO353_17175 -1.3 -2.2 beta-ketoadipyl CoA thiolase compare
AO353_19295 -1.3 -2.2 hypothetical protein compare
AO353_08115 -1.3 -3.4 energy transducer TonB compare
AO353_10035 -1.3 -5.2 LysR family transcriptional regulator compare
AO353_08165 -1.3 -2.0 pyrroline-5-carboxylate reductase compare
AO353_19500 -1.3 -2.3 peptidase S8 and S53 subtilisin kexin sedolisin compare
AO353_03300 -1.3 -2.6 hypothetical protein compare
AO353_17290 -1.2 -3.8 multidrug transporter compare
AO353_09060 -1.2 -2.0 hypothetical protein compare
AO353_16940 -1.2 -3.7 deoxycytidine triphosphate deaminase compare
AO353_07075 -1.2 -3.2 elongation factor Tu compare
AO353_15555 -1.2 -3.5 fumarylacetoacetase compare
AO353_02015 -1.2 -4.8 acetyltransferase compare
AO353_28990 -1.2 -4.6 LOG family protein compare
AO353_05195 -1.2 -6.0 glmZ(sRNA)-inactivating NTPase compare
AO353_00105 -1.2 -1.7 hypothetical protein compare
AO353_20170 -1.2 -2.9 trigger factor compare
AO353_00825 -1.2 -2.4 porin compare
AO353_07430 -1.2 -7.0 pyrroloquinoline quinone biosynthesis protein PqqF conserved
AO353_05130 -1.2 -1.3 anti-anti-sigma factor compare
AO353_24925 -1.2 -3.0 ABC transporter ATP-binding protein compare
AO353_09700 -1.1 -3.9 hypothetical protein compare
AO353_20565 -1.1 -1.5 tRNA-Ala compare
AO353_03545 -1.1 -5.0 hypothetical protein compare
AO353_14930 -1.1 -2.2 GntR family transcriptional regulator compare
AO353_12420 -1.1 -2.2 predicted FeS cluster maintenance protein (from data) compare
AO353_21645 -1.1 -2.0 cobalt transporter compare
AO353_08350 -1.1 -4.5 hypothetical protein compare
AO353_13160 -1.1 -1.7 membrane protease HflC compare
AO353_15680 -1.1 -2.4 cation-binding protein compare
AO353_27680 -1.1 -3.8 ATP-dependent Clp protease adaptor ClpS compare
AO353_14420 -1.1 -2.1 molecular chaperone DnaK compare
AO353_14485 -1.1 -0.7 pseudouridine synthase compare
AO353_17450 -1.1 -3.4 hypothetical protein compare
AO353_19060 -1.0 -2.9 CysB family transcriptional regulator compare
AO353_20335 -1.0 -3.5 3-methylcrotonyl-CoA carboxylase compare
AO353_07345 -1.0 -7.9 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_08265 -1.0 -3.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_22340 -1.0 -3.8 GfdT protein compare
AO353_13155 -1.0 -2.4 hypothetical protein compare
AO353_20185 -1.0 -3.5 DNA-binding protein compare
AO353_21935 -1.0 -1.5 nitrite reductase compare
AO353_20095 -1.0 -3.1 histidine kinase compare
AO353_04665 -1.0 -5.5 ATPase compare
AO353_08600 -1.0 -2.2 TetR family transcriptional regulator compare
AO353_22150 -1.0 -1.9 iron transporter compare
AO353_03020 -0.9 -4.0 arginine N-succinyltransferase compare
AO353_02640 -0.9 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_15830 -0.9 -1.7 transcriptional regulator compare
AO353_13665 -0.9 -3.7 hypothetical protein compare
AO353_20345 -0.9 -3.8 methylcrotonoyl-CoA carboxylase compare
AO353_03590 -0.9 -2.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_22390 -0.9 -3.6 aldehyde dehydrogenase compare
AO353_20840 -0.9 -1.5 ribose pyranase compare
AO353_18840 -0.9 -2.0 flagellar biosynthesis protein FlhB compare
AO353_09745 -0.9 -0.9 hypothetical protein compare
AO353_13300 -0.9 -2.0 LOG family protein compare
AO353_03100 -0.9 -1.4 XRE family transcriptional regulator compare
AO353_04365 -0.9 -2.7 recombinase XerD compare
AO353_09050 -0.9 -1.9 recombinase XerC compare
AO353_03715 -0.9 -1.4 H-NS histone compare
AO353_05145 -0.9 -2.9 ABC transporter permease compare
AO353_09885 -0.9 -1.5 transcriptional regulator PhoU compare
AO353_22935 -0.9 -5.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO353_02020 -0.9 -2.7 hypothetical protein compare
AO353_07340 -0.9 -6.2 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_00170 -0.9 -1.7 lysozyme compare
AO353_18540 -0.9 -1.6 pseudouridine synthase compare
AO353_07335 -0.9 -6.2 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_03585 -0.9 -1.7 ATP-dependent DNA helicase RuvA compare
AO353_07580 -0.8 -2.6 glutathione S-transferase compare
AO353_06400 -0.8 -2.6 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Ethanol in Pseudomonas fluorescens FW300-N2E3

For carbon source Ethanol across organisms