Experiment set2IT033 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Vancomycin Hydrochloride Hydrate 0.06 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS20320 +7.3 66.9 hypothetical protein compare
CA265_RS20315 +7.1 63.2 hypothetical protein compare
CA265_RS18990 +6.4 60.3 cell surface protein SprA compare
CA265_RS14535 +6.2 19.0 DUF4783 domain-containing protein compare
CA265_RS21905 +6.1 36.9 hypothetical protein compare
CA265_RS12890 +5.9 44.8 hypothetical protein compare
CA265_RS03290 +5.8 39.1 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS03260 +5.8 38.2 multidrug ABC transporter ATP-binding protein compare
CA265_RS21900 +5.8 49.5 two-component sensor histidine kinase compare
CA265_RS18125 +5.7 33.3 gliding motility protein GldL compare
CA265_RS23635 +5.7 50.7 gliding motility lipoprotein GldJ compare
CA265_RS18115 +5.7 44.8 gliding motility protein GldN compare
CA265_RS23985 +5.7 40.1 gliding motility lipoprotein GldB compare
CA265_RS03295 +5.6 46.5 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS06585 +5.6 32.6 hypothetical protein compare
CA265_RS18120 +5.6 49.9 gliding motility protein GldM compare
CA265_RS18130 +5.6 46.8 gliding motility-associated lipoprotein compare
CA265_RS23525 +5.3 44.3 hypothetical protein compare
CA265_RS15085 +5.3 31.2 hypothetical protein compare
CA265_RS19795 +5.3 46.2 TonB-dependent receptor compare
CA265_RS23640 +5.2 43.4 hypothetical protein compare
CA265_RS20890 +5.1 8.7 MRP family ATP-binding protein compare
CA265_RS14550 +5.1 35.2 hypothetical protein compare
CA265_RS19605 +5.0 30.3 serine hydrolase compare
CA265_RS19740 +4.7 16.9 gliding motility lipoprotein GldD compare
CA265_RS21290 +4.5 5.6 hypothetical protein compare
CA265_RS15200 +4.5 17.5 hypothetical protein compare
CA265_RS09035 +4.4 21.2 anti-anti-sigma factor compare
CA265_RS23510 +4.1 8.2 energy transducer TonB compare
CA265_RS18090 +4.0 24.6 gliding motility protein compare
CA265_RS10745 +3.9 33.2 diguanylate cyclase compare
CA265_RS15170 +3.8 32.4 peptidase M23 compare
CA265_RS15115 +3.8 6.9 porin compare
CA265_RS10740 +3.7 27.6 DNA-binding response regulator compare
CA265_RS21850 +3.7 21.9 hypothetical protein compare
CA265_RS07485 +3.7 23.7 macrolide ABC transporter ATP-binding protein compare
CA265_RS23505 +3.7 7.8 biopolymer transporter ExbD compare
CA265_RS13740 +3.6 7.9 cysteine synthase compare
CA265_RS21865 +3.6 20.7 two-component sensor histidine kinase compare
CA265_RS07510 +3.5 25.4 ABC transporter compare
CA265_RS15195 +3.5 10.0 hypothetical protein compare
CA265_RS24195 +3.5 5.5 TetR family transcriptional regulator compare
CA265_RS12945 +3.5 22.4 hypothetical protein compare
CA265_RS09715 +3.4 4.9 polyphosphate--nucleotide phosphotransferase compare
CA265_RS10600 +3.3 14.5 RNA polymerase subunit sigma-24 compare
CA265_RS21870 +3.3 17.2 DNA-binding response regulator compare
CA265_RS09335 +3.2 16.2 DUF4442 domain-containing protein compare
CA265_RS16380 +3.2 24.0 efflux transporter periplasmic adaptor subunit compare
CA265_RS21255 +3.1 8.3 hypothetical protein compare
CA265_RS25445 +3.1 17.7 ABC transporter compare
CA265_RS14555 +3.0 22.5 endopeptidase La compare
CA265_RS15895 +3.0 8.6 hypothetical protein compare
CA265_RS16385 +3.0 19.1 transporter compare
CA265_RS15900 +2.9 4.6 hypothetical protein compare
CA265_RS21265 +2.9 6.6 hypothetical protein compare
CA265_RS18225 +2.9 21.1 DNA-binding response regulator compare
CA265_RS21295 +2.9 3.3 hypothetical protein compare
CA265_RS21260 +2.8 8.2 hypothetical protein compare
CA265_RS15110 +2.8 7.3 NAD(P)-dependent oxidoreductase compare
CA265_RS12765 +2.8 18.6 SRPBCC family protein compare
CA265_RS13750 +2.7 7.4 hypothetical protein compare
CA265_RS00270 +2.7 2.7 hypothetical protein compare
CA265_RS01905 +2.6 8.8 hypothetical protein compare
CA265_RS17145 +2.6 11.7 malate:quinone oxidoreductase compare
CA265_RS07515 +2.5 16.1 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS08070 +2.4 5.7 tRNA-Ser compare
CA265_RS04020 +2.4 6.6 hypothetical protein compare
CA265_RS01910 +2.4 10.1 hypothetical protein compare
CA265_RS15615 +2.4 11.5 malate dehydrogenase compare
CA265_RS18230 +2.4 8.5 two-component sensor histidine kinase compare
CA265_RS08825 +2.3 14.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CA265_RS21250 +2.3 6.9 thioredoxin compare
CA265_RS15070 +2.3 10.3 hypothetical protein compare
CA265_RS23140 +2.2 6.3 hypothetical protein compare
CA265_RS20600 +2.2 3.3 hypothetical protein compare
CA265_RS19610 +2.2 10.2 hypothetical protein compare
CA265_RS19620 +2.2 6.8 hypothetical protein compare
CA265_RS10750 +2.2 12.5 SMC-Scp complex subunit ScpB compare
CA265_RS21245 +2.1 10.3 hypothetical protein compare
CA265_RS15105 +2.1 2.6 glutamyl-tRNA amidotransferase compare
CA265_RS13745 +2.0 4.4 sugar transporter compare
CA265_RS04360 +2.0 16.7 hypothetical protein compare
CA265_RS20620 +2.0 6.4 hypothetical protein compare
CA265_RS20745 +2.0 6.8 conjugative transposon protein TraK compare
CA265_RS24175 +1.9 10.4 hypothetical protein compare
CA265_RS00940 +1.9 3.2 hypothetical protein compare
CA265_RS20975 +1.9 2.4 hypothetical protein compare
CA265_RS03050 +1.9 2.6 hypothetical protein compare
CA265_RS24025 +1.9 9.1 hypothetical protein compare
CA265_RS20615 +1.9 8.6 hypothetical protein compare
CA265_RS25355 +1.9 5.4 DUF2807 domain-containing protein compare
CA265_RS23520 +1.8 5.2 phosphate ABC transporter substrate-binding protein compare
CA265_RS19535 +1.8 13.1 hypothetical protein compare
CA265_RS20605 +1.8 5.0 hypothetical protein compare
CA265_RS03045 +1.8 4.8 hypothetical protein compare
CA265_RS09200 +1.8 5.8 hypothetical protein compare
CA265_RS06115 +1.8 12.4 DNA mismatch repair protein MutT compare
CA265_RS06120 +1.7 7.9 UDP-glucose--hexose-1-phosphate uridylyltransferase (EC 2.7.7.12) (from data) compare
CA265_RS15910 +1.7 13.5 hypothetical protein compare
CA265_RS16270 +1.7 10.4 hypothetical protein compare
CA265_RS13020 +1.7 8.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS23355 +1.7 4.8 hypothetical protein compare
CA265_RS03255 +1.6 4.9 glycerophosphodiester phosphodiesterase compare
CA265_RS17190 +1.5 12.5 beta-N-acetylglucosaminidase compare
CA265_RS16155 +1.5 8.1 tRNA pseudouridine(55) synthase TruB compare
CA265_RS04700 +1.5 4.8 hypothetical protein compare
CA265_RS10905 +1.5 5.9 iron-dependent repressor compare
CA265_RS10220 +1.5 7.1 hypothetical protein compare
CA265_RS13255 +1.5 8.9 leucine dehydrogenase compare
CA265_RS24170 +1.4 8.1 MFS transporter conserved
CA265_RS17535 +1.4 7.9 deoxyribodipyrimidine photolyase compare
CA265_RS12820 +1.4 6.5 hypothetical protein compare
CA265_RS14415 +1.4 10.3 pseudouridine synthase compare
CA265_RS05720 +1.4 7.1 hypothetical protein compare
CA265_RS04015 +1.3 6.5 ABC transporter ATP-binding protein compare
CA265_RS10225 +1.3 5.8 hypothetical protein compare
CA265_RS02965 +1.3 6.5 hypothetical protein compare
CA265_RS21240 +1.3 4.6 hypothetical protein compare
CA265_RS15920 +1.3 2.8 hypothetical protein compare
CA265_RS11270 +1.3 3.9 hypothetical protein compare
CA265_RS21340 +1.3 9.1 secretion protein HlyD compare
CA265_RS22725 +1.3 3.8 hypothetical protein compare
CA265_RS20325 +1.3 7.7 hypothetical protein compare
CA265_RS08995 +1.2 9.7 TonB-dependent receptor compare
CA265_RS19600 +1.2 5.0 hypothetical protein compare
CA265_RS13390 +1.2 5.1 hypothetical protein compare
CA265_RS04010 +1.2 6.7 hypothetical protein compare
CA265_RS19800 +1.2 3.7 GLPGLI family protein compare
CA265_RS24230 +1.2 7.6 RNA polymerase sigma factor compare
CA265_RS13690 +1.2 8.9 hypothetical protein compare
CA265_RS06510 +1.2 4.5 hypothetical protein compare
CA265_RS16295 +1.2 5.2 LacI family transcriptional regulator compare
CA265_RS23620 +1.2 7.9 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
CA265_RS14840 +1.2 7.4 DUF4835 domain-containing protein compare
CA265_RS15175 +1.2 4.2 thioredoxin-dependent thiol peroxidase conserved
CA265_RS24185 +1.2 4.5 efflux transporter periplasmic adaptor subunit compare
CA265_RS21135 +1.2 8.8 hypothetical protein compare
CA265_RS21345 +1.2 8.0 MFS transporter compare
CA265_RS23490 +1.1 6.8 phosphoenolpyruvate carboxykinase (ATP) compare
CA265_RS18995 +1.1 3.2 Holliday junction branch migration protein RuvA compare
CA265_RS18240 +1.1 4.5 hypothetical protein compare
CA265_RS23150 +1.1 6.8 DNA-binding response regulator compare
CA265_RS06695 +1.1 6.4 hypothetical protein compare
CA265_RS03495 +1.1 2.4 cytochrome c biogenesis protein compare
CA265_RS20765 +1.1 5.4 mobilization protein compare
CA265_RS10210 +1.1 4.8 alpha-L-fucosidase compare
CA265_RS15230 +1.1 6.4 RNA pseudouridine synthase compare
CA265_RS24075 +1.1 8.0 hypothetical protein compare
CA265_RS08820 +1.1 6.4 hypothetical protein compare
CA265_RS10980 +1.1 6.4 histidine kinase compare
CA265_RS24680 +1.1 4.7 hypothetical protein compare
CA265_RS18135 +1.1 1.9 uroporphyrinogen-III synthase compare
CA265_RS06530 +1.1 7.1 hypothetical protein compare
CA265_RS25440 +1.1 4.2 capsular biosynthesis protein compare
CA265_RS03085 +1.1 4.1 hypothetical protein compare
CA265_RS23515 +1.0 2.5 hypothetical protein compare
CA265_RS19155 +1.0 8.2 hypothetical protein compare
CA265_RS07880 +1.0 7.6 transcriptional regulator compare
CA265_RS05580 +1.0 4.0 hypothetical protein compare
CA265_RS15250 +1.0 6.6 ABC transporter permease compare
CA265_RS18985 +1.0 3.2 hypothetical protein compare
CA265_RS06475 +1.0 3.7 hypothetical protein compare
CA265_RS00210 +1.0 2.0 potassium-transporting ATPase subunit F compare
CA265_RS23890 +1.0 2.6 hypothetical protein compare
CA265_RS23485 +1.0 2.9 hypothetical protein compare
CA265_RS00225 +1.0 3.9 potassium-transporting ATPase subunit C compare
CA265_RS20630 +1.0 5.1 hypothetical protein compare
CA265_RS13225 +1.0 6.2 exonuclease compare
CA265_RS18770 +1.0 3.5 hypothetical protein compare
CA265_RS14715 +1.0 3.9 hypothetical protein compare
CA265_RS18950 +1.0 4.1 transcriptional regulator compare
CA265_RS24780 +0.9 2.1 nucleoside-diphosphate kinase compare
CA265_RS13655 +0.9 4.2 hypothetical protein compare
CA265_RS03180 +0.9 3.0 hypothetical protein compare
CA265_RS07845 +0.9 6.0 signal transduction protein compare
CA265_RS06505 +0.9 2.3 hypothetical protein compare
CA265_RS20175 +0.9 3.3 thiamine-phosphate diphosphorylase compare
CA265_RS20415 +0.9 7.4 hypothetical protein compare
CA265_RS20170 +0.9 2.7 hypothetical protein compare
CA265_RS24770 +0.9 2.5 hypothetical protein compare
CA265_RS07840 +0.9 2.7 hypothetical protein compare
CA265_RS06465 +0.9 5.6 hypothetical protein compare
CA265_RS05615 +0.9 2.7 hypothetical protein compare
CA265_RS10850 +0.9 3.0 hypothetical protein compare
CA265_RS19615 +0.9 4.2 metal-dependent hydrolase compare
CA265_RS14350 +0.9 1.5 hypothetical protein compare
CA265_RS19595 +0.9 4.1 GxxExxY protein compare
CA265_RS04305 +0.9 3.6 hypothetical protein compare
CA265_RS21855 +0.9 4.4 RNA methyltransferase compare
CA265_RS16480 +0.9 5.5 hypothetical protein compare
CA265_RS15905 +0.9 4.7 RNA polymerase sigma factor compare
CA265_RS14200 +0.9 5.3 hypothetical protein compare
CA265_RS09680 +0.9 4.2 cytochrome-c peroxidase compare
CA265_RS09270 +0.9 1.8 hypothetical protein compare
CA265_RS06390 +0.9 6.9 hypothetical protein compare
CA265_RS01065 +0.9 3.6 hypothetical protein compare
CA265_RS17750 +0.9 6.1 hypothetical protein compare
CA265_RS21285 +0.9 2.5 DNA-binding response regulator compare
CA265_RS14520 +0.9 4.3 peptidase M48 compare
CA265_RS12005 +0.9 4.5 glutathione-dependent formaldehyde dehydrogenase compare


Specific Phenotypes

For 103 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pedobacter sp. GW460-11-11-14-LB5

For stress Vancomycin Hydrochloride Hydrate across organisms