Experiment set2IT033 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS06700 -9.0 -12.4 hypothetical protein compare
MMP_RS06685 -8.8 -12.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06355 -8.6 -3.4 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05515 -8.4 -6.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06345 -8.0 -12.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06680 -7.7 -17.1 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06715 -7.5 -20.9 cache domain-containing protein compare
MMP_RS06350 -7.2 -7.2 HesA/MoeB/ThiF family protein compare
MMP_RS01985 -7.1 -6.3 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS02195 -6.9 -5.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01500 -6.7 -3.5 CBS domain-containing protein compare
MMP_RS06720 -6.7 -8.4 response regulator transcription factor compare
MMP_RS03015 -6.7 -10.2 GTP 3' 8-cyclase MoaA compare
MMP_RS01175 -6.4 -5.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06705 -6.3 -9.3 formate/nitrite transporter family protein compare
MMP_RS06400 -6.1 -2.4 4Fe-4S binding protein compare
MMP_RS01020 -6.1 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06285 -6.0 -3.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06475 -5.8 -7.9 FAD-dependent oxidoreductase compare
MMP_RS00895 -5.7 -5.6 hypothetical protein compare
MMP_RS06295 -5.7 -10.4 methanogenesis marker 14 protein compare
MMP_RS06625 -5.6 -3.7 DNA primase compare
MMP_RS03035 -5.4 -7.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS00305 -5.4 -2.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS08300 -5.3 -2.1 metal-sulfur cluster assembly factor compare
MMP_RS01795 -5.2 -2.5 methanogenesis marker 6 protein compare
MMP_RS08460 -5.2 -3.9 proteasome-activating nucleotidase compare
MMP_RS03025 -5.2 -9.6 molybdenum cofactor guanylyltransferase compare
MMP_RS05920 -5.0 -1.2 50S ribosomal protein L37e compare
MMP_RS07730 -4.9 -3.2 pyruvate synthase subunit beta compare
MMP_RS07635 -4.9 -10.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01220 -4.9 -10.3 hypothetical protein compare
MMP_RS04585 -4.9 -12.8 AIR synthase related protein compare
MMP_RS03400 -4.8 -4.2 archease compare
MMP_RS03640 -4.8 -5.7 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08820 -4.8 -7.7 hypothetical protein compare
MMP_RS08105 -4.8 -8.7 6-carboxyhexanoate--CoA ligase compare
MMP_RS06370 -4.8 -7.2 biotin synthase BioB compare
MMP_RS08095 -4.8 -8.9 dethiobiotin synthase compare
MMP_RS03600 -4.8 -3.7 triose-phosphate isomerase compare
MMP_RS03315 -4.8 -1.8 ferrous iron transport protein A compare
MMP_RS01005 -4.8 -1.5 riboflavin synthase compare
MMP_RS01225 -4.7 -6.6 DUF5379 domain-containing protein compare
MMP_RS07645 -4.7 -8.0 aldehyde dehydrogenase family protein compare
MMP_RS04685 -4.7 -5.4 DUF126 domain-containing protein compare
MMP_RS04500 -4.7 -19.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS09020 -4.6 -2.4 hypothetical protein compare
MMP_RS08100 -4.6 -9.3 8-amino-7-oxononanoate synthase compare
MMP_RS04775 -4.5 -5.7 adenosylhomocysteinase compare
MMP_RS06270 -4.4 -8.1 TIGR00300 family protein compare
MMP_RS06120 -4.4 -2.9 UPF0147 family protein compare
MMP_RS08720 -4.4 -2.6 4Fe-4S binding protein compare
MMP_RS01610 -4.4 -4.7 hypothetical protein compare
MMP_RS07600 -4.4 -3.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02280 -4.4 -1.4 DUF211 domain-containing protein compare
MMP_RS00110 -4.4 -5.2 hypothetical protein compare
MMP_RS06200 -4.3 -11.0 M24 family metallopeptidase compare
MMP_RS08635 -4.3 -3.3 UbiA family prenyltransferase compare
MMP_RS07580 -4.2 -4.8 DUF356 domain-containing protein compare
MMP_RS03435 -4.2 -3.0 ketol-acid reductoisomerase compare
MMP_RS07845 -4.2 -3.5 LL-diaminopimelate aminotransferase compare
MMP_RS03960 -4.1 -1.6 hypothetical protein compare
MMP_RS04780 -4.1 -4.8 ribonuclease P compare
MMP_RS01755 -4.1 -2.3 DUF2097 domain-containing protein compare
MMP_RS02900 -4.1 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS00300 -4.1 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06730 -4.0 -3.0 phosphopantothenate/pantothenate synthetase compare
MMP_RS08745 -4.0 -9.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06340 -4.0 -10.6 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS02010 -4.0 -8.0 PHP domain-containing protein compare
MMP_RS04890 -4.0 -1.3 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06885 -3.9 -3.9 50S ribosome-binding GTPase compare
MMP_RS06230 -3.9 -4.7 helix-turn-helix domain-containing protein compare
MMP_RS01800 -3.9 -7.0 TIGR00303 family protein compare
MMP_RS07005 -3.9 -1.3 4Fe-4S binding protein compare
MMP_RS07195 -3.8 -14.5 M20 family metallo-hydrolase compare
MMP_RS08790 -3.8 -3.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS08210 -3.8 -3.6 phosphatidylglycerophosphatase A compare
MMP_RS05345 -3.8 -11.5 hypothetical protein compare
MMP_RS07750 -3.8 -6.5 DUF357 domain-containing protein compare
MMP_RS02875 -3.7 -12.0 chorismate pyruvate-lyase family protein compare
MMP_RS06925 -3.7 -4.6 ribonuclease VapC4 compare
MMP_RS06895 -3.7 -3.0 selenocysteine-specific translation elongation factor compare
MMP_RS05875 -3.6 -9.0 hydroxyethylthiazole kinase compare
MMP_RS00685 -3.6 -6.6 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06315 -3.6 -1.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07545 -3.6 -1.6 HTH domain-containing protein compare
MMP_RS08715 -3.6 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS00130 -3.5 -1.6 nickel-responsive transcriptional regulator NikR compare
MMP_RS07755 -3.5 -1.9 DUF555 domain-containing protein compare
MMP_RS03580 -3.5 -4.7 signal recognition particle-docking protein FtsY compare
MMP_RS03205 -3.4 -1.8 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02190 -3.4 -4.8 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS02135 -3.4 -6.1 DUF5612 domain-containing protein compare
MMP_RS02345 -3.4 -5.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS02800 -3.4 -8.5 nucleotidyltransferase domain-containing protein compare
MMP_RS00115 -3.4 -16.3 radical SAM protein compare
MMP_RS07445 -3.4 -4.4 helix-turn-helix domain-containing protein compare
MMP_RS01250 -3.4 -6.6 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS01385 -3.3 -1.1 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS05815 -3.3 -4.5 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS05250 -3.2 -2.4 NFYB/HAP3 family transcription factor subunit compare
MMP_RS05545 -3.2 -9.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05845 -3.2 -2.4 tRNA-intron lyase compare
MMP_RS03155 -3.2 -10.2 precorrin-6A reductase compare
MMP_RS07630 -3.1 -1.8 ATP-binding cassette domain-containing protein compare
MMP_RS07380 -3.1 -3.4 transcription elongation factor Spt5 compare
MMP_RS01380 -3.1 -5.3 PHP domain-containing protein compare
MMP_RS02355 -3.1 -3.7 30S ribosomal protein S27ae compare
MMP_RS08435 -3.0 -3.9 Era-like GTP-binding protein compare
MMP_RS02165 -3.0 -11.1 tRNA-dihydrouridine synthase compare
MMP_RS02235 -2.9 -15.0 CBS domain-containing protein compare
MMP_RS06020 -2.9 -5.9 archaeoflavoprotein AfpA compare
MMP_RS02240 -2.9 -4.5 methanogenesis marker 7 protein compare
MMP_RS03475 -2.9 -1.1 hypothetical protein compare
MMP_RS06215 -2.8 -4.9 30S ribosomal protein S6e compare
MMP_RS07735 -2.8 -1.3 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07605 -2.8 -5.9 diadenylate cyclase compare
MMP_RS01830 -2.8 -2.3 tRNA-Val compare
MMP_RS06105 -2.8 -13.0 hydrogenase maturation peptidase HycI compare
MMP_RS06630 -2.8 -1.8 UPF0058 family protein compare
MMP_RS04870 -2.8 -4.8 TIGR02253 family HAD-type hydrolase compare
MMP_RS05555 -2.8 -1.9 DUF4040 domain-containing protein compare
MMP_RS05930 -2.7 -3.3 3-isopropylmalate dehydratase large subunit compare
MMP_RS07200 -2.7 -6.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS04605 -2.6 -2.9 cobalt ECF transporter T component CbiQ compare
MMP_RS08440 -2.6 -3.9 cell division protein SepF compare
MMP_RS08445 -2.6 -6.1 DUF2099 family protein compare
MMP_RS03095 -2.5 -10.0 diphthine synthase compare
MMP_RS07575 -2.5 -3.6 RNA ligase partner protein compare
MMP_RS08650 -2.5 -4.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS04710 -2.5 -2.3 hypothetical protein compare
MMP_RS05550 -2.4 -1.1 cation:proton antiporter compare
MMP_RS00810 -2.4 -8.9 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03110 -2.4 -8.4 glycosyltransferase family 2 protein compare
MMP_RS01725 -2.4 -5.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS07425 -2.4 -6.8 GTP-binding protein compare
MMP_RS01700 -2.3 -1.1 dihydroxy-acid dehydratase compare
MMP_RS08320 -2.3 -7.6 molybdopterin molybdotransferase MoeA compare
MMP_RS01365 -2.3 -2.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS07525 -2.3 -7.6 4Fe-4S binding protein compare
MMP_RS03140 -2.2 -12.4 hypothetical protein compare
MMP_RS05425 -2.1 -5.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS03145 -2.1 -9.0 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS05430 -2.1 -4.2 TIGR00288 family NYN domain-containing protein compare
MMP_RS04615 -2.1 -2.9 PDGLE domain-containing protein compare
MMP_RS00320 -2.1 -2.3 class I SAM-dependent methyltransferase compare
MMP_RS05265 -2.1 -3.0 2-isopropylmalate synthase compare
MMP_RS00050 -2.1 -8.6 AarF/UbiB family protein compare
MMP_RS05445 -2.1 -11.5 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS01840 -2.1 -10.8 TIGR00289 family protein compare
MMP_RS01325 -2.1 -3.1 dihydroneopterin aldolase family protein compare
MMP_RS00750 -2.1 -3.0 fumarate hydratase compare
MMP_RS04875 -2.0 -5.2 energy-converting hydrogenase B subunit P compare
MMP_RS08330 -2.0 -6.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS03445 -2.0 -1.6 methanogenesis marker 17 protein compare
MMP_RS02885 -2.0 -13.2 molybdopterin biosynthesis protein compare
MMP_RS00900 -2.0 -3.2 50S ribosomal protein L39e compare
MMP_RS05540 -1.9 -2.7 hypothetical protein compare
MMP_RS02245 -1.9 -3.2 hypothetical protein compare
MMP_RS02340 -1.9 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01265 -1.9 -2.5 hypothetical protein compare
MMP_RS07090 -1.9 -8.2 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06940 -1.9 -4.2 polyprenyl diphosphate synthase compare
MMP_RS07555 -1.9 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS00985 -1.9 -5.7 CDC48 family AAA ATPase compare
MMP_RS07435 -1.8 -2.7 GMP synthase subunit A compare
MMP_RS03700 -1.8 -8.0 sodium:proton antiporter compare
MMP_RS05440 -1.7 -8.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS01545 -1.7 -1.4 CBS domain-containing protein compare
MMP_RS07420 -1.7 -4.1 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01600 -1.7 -2.9 50S ribosomal protein L15e compare
MMP_RS01475 -1.7 -9.7 phosphosulfolactate synthase compare
MMP_RS08355 -1.7 -5.8 Na(+)/H(+) antiporter subunit B compare
MMP_RS07955 -1.7 -5.3 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS00120 -1.7 -4.8 LysR family transcriptional regulator compare
MMP_RS08645 -1.6 -7.3 UPF0179 family protein compare
MMP_RS05925 -1.6 -5.2 small nuclear ribonucleoprotein compare
MMP_RS05450 -1.6 -3.2 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS08370 -1.6 -0.8 cation:proton antiporter subunit C compare
MMP_RS07190 -1.6 -8.7 chromosome segregation protein SMC compare
MMP_RS06110 -1.6 -2.8 ATP-dependent protease LonB compare
MMP_RS06840 -1.5 -1.0 DNA-directed RNA polymerase subunit N compare
MMP_RS06130 -1.5 -3.5 peptidylprolyl isomerase compare
MMP_RS03555 -1.5 -6.9 transcriptional regulator compare
MMP_RS01180 -1.5 -1.6 XTP/dITP diphosphatase compare
MMP_RS05525 -1.5 -7.6 calcium/sodium antiporter compare
MMP_RS05245 -1.5 -9.7 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS01335 -1.5 -2.7 prefoldin subunit beta compare
MMP_RS03305 -1.5 -8.3 winged helix-turn-helix domain-containing protein compare
MMP_RS07685 -1.5 -6.3 TIGR01212 family radical SAM protein compare
MMP_RS04620 -1.5 -4.6 cobalt transporter CbiM compare
MMP_RS01665 -1.5 -2.5 DUF2111 domain-containing protein compare
MMP_RS07390 -1.5 -3.0 cell division protein FtsZ compare
MMP_RS01045 -1.5 -6.3 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS00720 -1.4 -9.5 metal-dependent hydrolase compare
MMP_RS02170 -1.4 -4.9 CBS domain-containing protein compare
MMP_RS05420 -1.4 -3.3 DUF61 family protein compare
MMP_RS05765 -1.4 -4.3 M42 family metallopeptidase compare
MMP_RS00325 -1.4 -1.7 RNA-binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in rich t2 experiments