Experiment set2IT032 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Glucosamine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4596 -4.5 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3248 -4.3 -5.1 Probable transmembrane protein compare
Pf6N2E2_4597 -4.3 -6.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3782 -4.1 -2.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4825 -3.9 -6.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_64 -3.8 -2.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3751 -3.8 -9.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3839 -3.8 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5176 -3.7 -6.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5177 -3.7 -8.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3062 -3.6 -3.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4564 -3.6 -8.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3610 -3.6 -4.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5006 -3.5 -7.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_1381 -3.5 -5.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5175 -3.4 -12.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_77 -3.4 -4.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_71 -3.4 -5.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3060 -3.4 -3.3 Outer membrane protein H precursor compare
Pf6N2E2_3842 -3.4 -4.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4077 -3.3 -2.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_624 -3.3 -5.5 hypothetical protein PA3071 compare
Pf6N2E2_1401 -3.3 -5.9 FIG00955631: hypothetical protein compare
Pf6N2E2_3752 -3.3 -14.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4047 -3.2 -4.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4826 -3.2 -6.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3841 -3.2 -3.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3942 -3.1 -9.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3941 -3.1 -3.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4048 -3.0 -6.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2756 -3.0 -4.6 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_66 -3.0 -6.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5780 -3.0 -7.2 Periplasmic protease compare
Pf6N2E2_3271 -2.9 -1.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5430 -2.8 -7.3 Transglycosylase, Slt family compare
Pf6N2E2_2047 -2.8 -3.8 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) conserved
Pf6N2E2_2052 -2.8 -6.7 ABC transporter for D-Glucosamine Hydrochloride, permease component 2 (from data) conserved
Pf6N2E2_3253 -2.8 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2051 -2.8 -7.9 ABC transporter for D-Glucosamine Hydrochloride, permease component 1 (from data) conserved
Pf6N2E2_2217 -2.8 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5255 -2.8 -9.7 Outer membrane stress sensor protease DegS compare
Pf6N2E2_3252 -2.7 -6.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5252 -2.6 -2.5 FIG00956396: hypothetical protein compare
Pf6N2E2_2519 -2.6 -1.7 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_4206 -2.6 -2.5 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1400 -2.6 -10.3 Sensory box histidine kinase/response regulator compare
Pf6N2E2_5894 -2.6 -7.1 Putative threonine efflux protein compare
Pf6N2E2_4372 -2.6 -3.9 FIG00460773: hypothetical protein compare
Pf6N2E2_5014 -2.5 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4752 -2.5 -11.3 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_2753 -2.4 -2.9 HtrA protease/chaperone protein compare
Pf6N2E2_1932 -2.4 -5.0 Transcriptional regulator, IclR family compare
Pf6N2E2_1089 -2.3 -2.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1402 -2.3 -5.7 hypothetical protein compare
Pf6N2E2_3630 -2.3 -5.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3170 -2.3 -8.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_180 -2.2 -3.9 Transcriptional regulator, MerR family compare
Pf6N2E2_510 -2.2 -9.4 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_4362 -2.2 -2.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5049 -2.1 -2.5 acetyltransferase, GNAT family compare
Pf6N2E2_5219 -2.0 -7.4 FIG140336: TPR domain protein compare
Pf6N2E2_5579 -2.0 -6.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_5156 -2.0 -1.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3171 -2.0 -1.5 hypothetical protein compare
Pf6N2E2_621 -1.9 -5.9 TPR domain protein in aerotolerance operon compare
Pf6N2E2_4759 -1.9 -10.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2752 -1.9 -6.6 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3720 -1.9 -3.0 FIG027190: Putative transmembrane protein compare
Pf6N2E2_5899 -1.9 -5.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2053 -1.9 -5.7 ABC transporter for D-Glucosamine, periplasmic substrate-binding component (from data) conserved
Pf6N2E2_622 -1.8 -3.8 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3349 -1.8 -3.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4638 -1.8 -1.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2574 -1.8 -2.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_658 -1.8 -7.8 sensor histidine kinase compare
Pf6N2E2_5555 -1.8 -1.6 Cold shock protein CspA compare
Pf6N2E2_63 -1.8 -3.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3783 -1.7 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4478 -1.7 -5.4 FIG019278: hypothetical protein compare
Pf6N2E2_3932 -1.7 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_1032 -1.7 -1.3 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_620 -1.6 -4.9 BatD compare
Pf6N2E2_4009 -1.6 -6.5 GGDEF domain protein compare
Pf6N2E2_4611 -1.6 -3.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3132 -1.6 -3.2 FIG00954548: hypothetical protein compare
Pf6N2E2_3834 -1.6 -4.9 Lipoprotein NlpD compare
Pf6N2E2_89 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_5345 -1.5 -5.4 LppC putative lipoprotein compare
Pf6N2E2_3716 -1.5 -4.1 FIG143263: Glycosyl transferase compare
Pf6N2E2_4969 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_4416 -1.4 -1.9 Tyrosine recombinase XerC compare
Pf6N2E2_1821 -1.4 -2.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3337 -1.4 -5.7 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) conserved
Pf6N2E2_3835 -1.4 -2.2 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2340 -1.4 -3.5 Transcriptional regulator, GntR family compare
Pf6N2E2_664 -1.4 -1.8 Acetoin catabolism protein X compare
Pf6N2E2_5494 -1.4 -3.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_449 -1.4 -2.8 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_2586 -1.4 -1.3 Hpt domain protein compare
Pf6N2E2_5771 -1.3 -5.3 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_1705 -1.3 -1.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5943 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_3833 -1.3 -3.7 hypothetical protein compare
Pf6N2E2_309 -1.3 -1.8 FIG00957702: hypothetical protein compare
Pf6N2E2_4584 -1.3 -2.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_625 -1.3 -3.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_4052 -1.3 -1.4 FIG00955481: hypothetical protein compare
Pf6N2E2_5328 -1.3 -3.6 FIG00958649: hypothetical protein compare
Pf6N2E2_4169 -1.2 -4.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3461 -1.2 -0.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3338 -1.2 -1.2 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_3282 -1.2 -1.6 FIG005080: Possible exported protein compare
Pf6N2E2_5111 -1.2 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_4479 -1.2 -2.0 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_3726 -1.2 -3.2 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf6N2E2_4749 -1.2 -3.1 DNA polymerase III epsilon subunit (EC 2.7.7.7) compare
Pf6N2E2_70 -1.2 -2.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3613 -1.2 -4.6 GTP-binding protein HflX compare
Pf6N2E2_6140 -1.2 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_660 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_3725 -1.2 -2.0 FIG085779: Lipoprotein compare
Pf6N2E2_5160 -1.2 -1.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4418 -1.2 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_146 -1.1 -1.0 Transcriptional regulator, MarR family compare
Pf6N2E2_2674 -1.1 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_630 -1.1 -3.1 Epimerase KguE compare
Pf6N2E2_3984 -1.1 -5.7 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4691 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_4480 -1.1 -7.1 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Pf6N2E2_2048 -1.1 -2.3 Transcriptional regulator, IclR family compare
Pf6N2E2_1009 -1.1 -2.1 Inositol transport system permease protein compare
Pf6N2E2_2919 -1.1 -1.1 FIG00955830: hypothetical protein compare
Pf6N2E2_1699 -1.1 -1.8 FIG00955832: hypothetical protein compare
Pf6N2E2_4278 -1.0 -5.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_818 -1.0 -4.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4453 -1.0 -8.1 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_1283 -1.0 -2.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_891 -1.0 -2.3 4-oxalocrotonate tautomerase compare
Pf6N2E2_2746 -1.0 -3.9 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_3003 -1.0 -1.5 Bacteriophage protein GP46 compare
Pf6N2E2_4557 -1.0 -4.8 oxidoreductase, 2OG-Fe(II) oxygenase family compare
Pf6N2E2_4615 -1.0 -1.3 type IV pili signal transduction protein PilI compare
Pf6N2E2_1617 -1.0 -0.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_4083 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_2367 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_5331 -0.9 -3.6 ATPase, AFG1 family compare
Pf6N2E2_1298 -0.9 -3.0 Xanthine transporter,putative compare
Pf6N2E2_962 -0.9 -1.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_4160 -0.9 -1.1 Cytochrome c5 compare
Pf6N2E2_3763 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_2488 -0.9 -1.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4279 -0.9 -5.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_876 -0.9 -3.4 Cobalt-containing nitrile hydratase subunit beta (EC 4.2.1.84) compare
Pf6N2E2_3346 -0.9 -3.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_99 -0.9 -2.7 hypothetical protein compare
Pf6N2E2_3702 -0.9 -2.2 FIG00953907: hypothetical protein compare
Pf6N2E2_2894 -0.9 -2.2 N-acylglucosamine 2-epimerase (EC 5.1.3.8) compare
Pf6N2E2_3940 -0.9 -4.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_1424 -0.9 -1.3 transcriptional regulator, TetR family compare
Pf6N2E2_2080 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_3729 -0.9 -2.7 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare
Pf6N2E2_2938 -0.9 -2.6 Outer membrane lipoprotein compare
Pf6N2E2_4331 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_2962 -0.9 -2.1 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_4075 -0.9 -2.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4601 -0.9 -1.9 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4072 -0.9 -2.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5251 -0.9 -2.9 FIG00954698: hypothetical protein compare
Pf6N2E2_4915 -0.9 -3.4 FIG000875: Thioredoxin domain-containing protein EC-YbbN compare
Pf6N2E2_4541 -0.9 -0.8 hypothetical protein compare
Pf6N2E2_49 -0.9 -1.8 FIG00967200: hypothetical protein compare
Pf6N2E2_3747 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_5725 -0.9 -3.4 nucleoprotein/polynucleotide-associated enzyme compare
Pf6N2E2_2264 -0.8 -2.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_953 -0.8 -1.6 FIG00958851: hypothetical protein compare
Pf6N2E2_4205 -0.8 -2.2 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3692 -0.8 -5.6 Selenoprotein O and cysteine-containing homologs compare
Pf6N2E2_2397 -0.8 -1.9 Two-component system response regulator QseB compare
Pf6N2E2_3033 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_5965 -0.8 -2.2 transcriptional regulator compare
Pf6N2E2_2561 -0.8 -1.4 FIG00955434: hypothetical protein compare
Pf6N2E2_518 -0.8 -3.2 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf6N2E2_5730 -0.8 -2.0 FIG00954480: hypothetical protein compare
Pf6N2E2_84 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_4585 -0.8 -5.2 Cell division protein FtsX compare
Pf6N2E2_4150 -0.8 -2.4 probable exported protein YPO0432 compare
Pf6N2E2_1718 -0.8 -1.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1720 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_516 -0.8 -3.0 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_2827 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_3761 -0.8 -6.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3632 -0.8 -3.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2119 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_1917 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_5500 -0.8 -2.4 MoxR-like ATPases compare
Pf6N2E2_3844 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_4509 -0.8 -3.9 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
Pf6N2E2_2904 -0.8 -1.7 Hypothetical protein DUF454 compare
Pf6N2E2_1824 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_1469 -0.8 -2.2 NAD-dependent formate dehydrogenase gamma subunit compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source D-Glucosamine Hydrochloride in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Glucosamine Hydrochloride across organisms