Experiment set2IT032 for Pseudomonas fluorescens FW300-N2E3

Compare to:

m-Inositol carbon source

200 most important genes:

  gene name fitness t score description  
AO353_21345 -4.1 -4.0 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) conserved
AO353_12090 -4.0 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_13070 -4.0 -7.6 phosphoserine phosphatase compare
AO353_21335 -3.9 -10.3 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) conserved
AO353_10670 -3.9 -6.9 shikimate dehydrogenase compare
AO353_12070 -3.8 -6.9 imidazoleglycerol-phosphate dehydratase compare
AO353_08345 -3.8 -6.8 dihydroxy-acid dehydratase compare
AO353_12085 -3.8 -7.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_10035 -3.8 -9.1 LysR family transcriptional regulator compare
AO353_24340 -3.8 -2.6 TetR family transcriptional regulator compare
AO353_12520 -3.7 -10.3 glutamate synthase compare
AO353_08180 -3.7 -10.8 homoserine O-acetyltransferase compare
AO353_12365 -3.7 -4.3 phosphoribosyl-AMP cyclohydrolase compare
AO353_14505 -3.6 -10.1 ketol-acid reductoisomerase compare
AO353_21385 -3.6 -10.5 m-Inositol ABC transporter, ATPase component (itaA) (from data) conserved
AO353_20665 -3.6 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20565 -3.5 -2.4 tRNA-Ala compare
AO353_20625 -3.5 -3.4 3-isopropylmalate dehydratase compare
AO353_07230 -3.5 -14.3 anthranilate synthase compare
AO353_12515 -3.5 -19.4 glutamate synthase compare
AO353_08185 -3.5 -9.2 methionine biosynthesis protein MetW compare
AO353_07220 -3.5 -8.0 anthranilate synthase compare
AO353_20635 -3.5 -9.9 3-isopropylmalate dehydrogenase compare
AO353_08780 -3.4 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_10025 -3.4 -13.4 pyruvate carboxylase subunit B compare
AO353_02075 -3.4 -9.2 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_21360 -3.3 -9.4 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) conserved
AO353_08465 -3.3 -16.7 phosphoenolpyruvate-protein phosphotransferase compare
AO353_14400 -3.2 -3.1 Fis family transcriptional regulator compare
AO353_21340 -3.2 -9.0 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) conserved
AO353_05115 -3.2 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_02270 -3.2 -5.7 isochorismatase compare
AO353_10030 -3.1 -10.7 pyruvate carboxylase subunit A compare
AO353_02070 -3.1 -6.9 prephenate dehydratase compare
AO353_20695 -3.1 -6.3 O-succinylhomoserine sulfhydrylase compare
AO353_21380 -3.1 -6.6 rhizopine-binding protein conserved
AO353_20540 -3.1 -7.9 aromatic amino acid aminotransferase compare
AO353_13165 -3.1 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08885 -3.1 -17.0 polyphosphate kinase compare
AO353_12115 -3.0 -2.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_21350 -3.0 -4.5 methylmalonate-semialdehyde dehydrogenase compare
AO353_04155 -3.0 -11.1 ornithine carbamoyltransferase compare
AO353_05110 -3.0 -10.7 histidinol dehydrogenase compare
AO353_00310 -3.0 -8.5 transaldolase compare
AO353_08685 -3.0 -9.3 N-acetylglutamate synthase compare
AO353_20175 -2.9 -2.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_09240 -2.9 -2.8 acetylglutamate kinase compare
AO353_08510 -2.9 -5.2 3-phosphoglycerate dehydrogenase compare
AO353_12075 -2.9 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_10710 -2.9 -5.1 tryptophan synthase subunit beta compare
AO353_12360 -2.8 -8.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_20620 -2.8 -6.8 isopropylmalate isomerase compare
AO353_21355 -2.8 -3.3 xylose isomerase compare
AO353_14500 -2.8 -6.1 acetolactate synthase 3 regulatory subunit compare
AO353_07155 -2.7 -7.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07210 -2.7 -6.0 indole-3-glycerol-phosphate synthase compare
AO353_21390 -2.7 -9.8 m-Inositol ABC transporter, permease component (iatP) (from data) conserved
AO353_21365 -2.7 -6.1 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) conserved
AO353_14495 -2.7 -10.2 acetolactate synthase 3 catalytic subunit compare
AO353_12500 -2.7 -1.8 shikimate kinase compare
AO353_14115 -2.7 -6.8 gamma-glutamyl kinase compare
AO353_15925 -2.6 -12.8 2-isopropylmalate synthase compare
AO353_05130 -2.6 -2.5 anti-anti-sigma factor compare
AO353_08165 -2.6 -3.1 pyrroline-5-carboxylate reductase compare
AO353_07215 -2.6 -7.0 anthranilate phosphoribosyltransferase compare
AO353_04105 -2.6 -8.0 argininosuccinate synthase compare
AO353_09000 -2.5 -5.3 argininosuccinate lyase compare
AO353_22800 -2.5 -3.4 sulfite reductase compare
AO353_14370 -2.4 -6.9 glucose-6-phosphate isomerase compare
AO353_18540 -2.4 -3.1 pseudouridine synthase compare
AO353_08475 -2.4 -9.0 phosphoserine phosphatase compare
AO353_01375 -2.3 -6.6 phosphate acyltransferase compare
AO353_08015 -2.3 -7.3 5,10-methylenetetrahydrofolate reductase compare
AO353_19060 -2.3 -5.4 CysB family transcriptional regulator compare
AO353_02685 -2.3 -3.7 phosphoribosylglycinamide formyltransferase compare
AO353_03020 -2.2 -7.2 arginine N-succinyltransferase compare
AO353_09060 -2.2 -3.6 hypothetical protein compare
AO353_02710 -2.2 -9.6 (p)ppGpp synthetase compare
AO353_11850 -2.2 -4.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_03580 -2.0 -3.7 ATP-dependent DNA helicase RuvB compare
AO353_14775 -2.0 -5.8 hypothetical protein compare
AO353_12105 -2.0 -6.1 peptidase S41 compare
AO353_05080 -2.0 -10.1 sulfate adenylyltransferase compare
AO353_16530 -2.0 -2.6 ribonuclease HII compare
AO353_02250 -1.9 -3.9 chorismate synthase compare
AO353_14595 -1.9 -8.3 carbonate dehydratase compare
AO353_05075 -1.9 -8.9 adenylylsulfate kinase compare
AO353_06495 -1.9 -5.4 gamma-glutamyl phosphate reductase compare
AO353_05625 -1.9 -2.1 transcription elongation factor GreA compare
AO353_07355 -1.9 -4.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_26285 -1.8 -1.4 hypothetical protein compare
AO353_16940 -1.8 -4.8 deoxycytidine triphosphate deaminase compare
AO353_10705 -1.8 -4.5 tryptophan synthase subunit alpha compare
AO353_12460 -1.8 -7.5 malate dehydrogenase compare
AO353_14405 -1.8 -10.6 ATPase compare
AO353_27675 -1.8 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_06045 -1.7 -6.3 exodeoxyribonuclease V subunit beta compare
AO353_10455 -1.7 -2.0 tRNA modification GTPase MnmE compare
AO353_11750 -1.7 -2.8 ATPase compare
AO353_11165 -1.7 -8.9 hypothetical protein compare
AO353_05195 -1.7 -8.5 glmZ(sRNA)-inactivating NTPase compare
AO353_20095 -1.6 -5.1 histidine kinase compare
AO353_03590 -1.6 -3.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_18715 -1.6 -2.1 histidine kinase compare
AO353_04220 -1.6 -5.5 chemotaxis protein CheY compare
AO353_04665 -1.6 -8.6 ATPase compare
AO353_00510 -1.6 -5.0 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_01975 -1.5 -6.4 glycosyl transferase compare
AO353_03235 -1.5 -7.3 glutamate-pyruvate aminotransferase compare
AO353_13140 -1.5 -4.8 tRNA dimethylallyltransferase compare
AO353_04355 -1.5 -2.1 homoserine dehydrogenase compare
AO353_04565 -1.5 -4.9 nucleoid-associated protein compare
AO353_00750 -1.5 -3.4 GntR family transcriptional regulator compare
AO353_01080 -1.5 -7.2 hypothetical protein compare
AO353_27550 -1.5 -2.1 hypothetical protein compare
AO353_24255 -1.5 -3.0 hypothetical protein compare
AO353_08350 -1.4 -6.4 hypothetical protein compare
AO353_14420 -1.4 -3.5 molecular chaperone DnaK compare
AO353_06155 -1.4 -7.1 copper-transporting ATPase compare
AO353_10445 -1.4 -1.9 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_00825 -1.4 -3.0 porin compare
AO353_18705 -1.4 -4.3 anti-anti-sigma factor compare
AO353_15410 -1.4 -2.0 hypothetical protein compare
AO353_06415 -1.4 -4.0 hypothetical protein compare
AO353_04325 -1.4 -2.2 hypothetical protein compare
AO353_06040 -1.4 -2.8 exodeoxyribonuclease V subunit alpha compare
AO353_27665 -1.3 -6.6 arginyl-tRNA-protein transferase compare
AO353_16835 -1.3 -2.1 LuxR family transcriptional regulator compare
AO353_05690 -1.3 -2.8 SsrA-binding protein compare
AO353_06050 -1.3 -4.8 exodeoxyribonuclease V subunit gamma compare
AO353_09265 -1.3 -2.5 hypothetical protein compare
AO353_15170 -1.3 -2.9 cytochrome D ubiquinol oxidase subunit III compare
AO353_08470 -1.3 -3.5 RNA pyrophosphohydrolase compare
AO353_05135 -1.3 -6.1 toluene tolerance protein compare
AO353_02000 -1.3 -3.4 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_20370 -1.2 -2.8 MerR family transcriptional regulator compare
AO353_01985 -1.2 -6.8 hypothetical protein compare
AO353_02015 -1.2 -5.4 acetyltransferase compare
AO353_09260 -1.2 -4.9 ribonuclease PH compare
AO353_03815 -1.2 -1.7 heme utilization protein compare
AO353_07315 -1.2 -1.9 rRNA methyltransferase compare
AO353_11730 -1.2 -6.4 glutamate--cysteine ligase compare
AO353_01990 -1.2 -5.1 UDP-N-acetylglucosamine 2-epimerase compare
AO353_24425 -1.2 -2.7 amino acid ABC transporter permease compare
AO353_21630 -1.2 -1.4 precorrin-4 C11-methyltransferase compare
AO353_27650 -1.2 -3.3 cell division protein FtsK compare
AO353_00515 -1.2 -2.7 hypothetical protein compare
AO353_09235 -1.2 -5.7 phosphoglucomutase compare
AO353_07075 -1.2 -3.5 elongation factor Tu compare
AO353_02010 -1.2 -4.7 glycosyl transferase family 1 compare
AO353_27380 -1.2 -1.8 pyocin R2, holin compare
AO353_10440 -1.2 -4.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_27660 -1.2 -3.8 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_01550 -1.1 -4.1 hypothetical protein compare
AO353_16710 -1.1 -2.6 hypothetical protein compare
AO353_08505 -1.1 -7.0 FAD-linked oxidase compare
AO353_05800 -1.1 -3.8 hypothetical protein compare
AO353_08170 -1.1 -3.3 hypothetical protein compare
AO353_05145 -1.1 -4.0 ABC transporter permease compare
AO353_15900 -1.1 -2.1 GTP-binding protein compare
AO353_08265 -1.1 -3.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_02810 -1.1 -5.0 histidine kinase compare
AO353_20510 -1.1 -1.8 amidase compare
AO353_03630 -1.1 -6.8 porin compare
AO353_07495 -1.1 -8.3 acyl-CoA dehydrogenase compare
AO353_02720 -1.1 -3.9 cysteine synthase compare
AO353_00620 -1.1 -2.0 cytochrome C oxidase Cbb3 compare
AO353_22880 -1.0 -4.4 polyketide cyclase compare
AO353_05415 -1.0 -2.1 hypothetical protein compare
AO353_01970 -1.0 -6.1 hypothetical protein compare
AO353_15830 -1.0 -2.4 transcriptional regulator compare
AO353_10320 -1.0 -1.7 hypothetical protein compare
AO353_03615 -1.0 -2.2 cold-shock protein compare
AO353_27680 -1.0 -4.0 ATP-dependent Clp protease adaptor ClpS compare
AO353_11830 -1.0 -4.3 formate dehydrogenase family accessory protein FdhD compare
AO353_14055 -1.0 -6.9 ATP-dependent protease compare
AO353_01995 -1.0 -6.7 hypothetical protein compare
AO353_18780 -1.0 -3.9 cobyrinic acid a,c-diamide synthase compare
AO353_20800 -0.9 -1.6 hypothetical protein compare
AO353_07290 -0.9 -5.6 mannose-1-phosphate guanylyltransferase compare
AO353_05150 -0.9 -3.2 ABC transporter ATP-binding protein compare
AO353_01355 -0.9 -4.2 3-oxoacyl-ACP synthase compare
AO353_13640 -0.9 -3.0 histidine kinase compare
AO353_09720 -0.9 -1.3 hypothetical protein compare
AO353_12690 -0.9 -1.0 acyl carrier protein compare
AO353_00490 -0.9 -2.1 PasA protein compare
AO353_00330 -0.9 -4.6 hypothetical protein compare
AO353_00610 -0.9 -1.7 cytochrome C oxidase Cbb3 compare
AO353_28425 -0.9 -2.4 TetR family transcriptional regulator compare
AO353_14795 -0.9 -3.2 molybdopterin-synthase adenylyltransferase compare
AO353_20585 -0.9 -2.4 TetR family transcriptional regulator compare
AO353_20685 -0.9 -4.3 colicin V production CvpA compare
AO353_00760 -0.9 -1.6 hypothetical protein compare
AO353_28990 -0.9 -4.0 LOG family protein compare
AO353_11610 -0.9 -2.8 glutamine ABC transporter ATP-binding protein compare
AO353_12950 -0.9 -4.8 polymerase compare
AO353_02020 -0.9 -3.0 hypothetical protein compare
AO353_12080 -0.9 -2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_18285 -0.9 -1.6 3-phosphoglycerate kinase compare
AO353_24740 -0.9 -2.1 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source m-Inositol in Pseudomonas fluorescens FW300-N2E3

For carbon source m-Inositol across organisms