Experiment set2IT032 for Pseudomonas fluorescens FW300-N2E3

Compare to:

m-Inositol carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_21330 +1.5 8.2 RpiR family transcriptional regulator compare
AO353_16615 +1.4 11.3 RNA polymerase sigma factor RpoS compare
AO353_06320 +1.3 5.6 AsnC family transcriptional regulator compare
AO353_19340 +1.3 10.5 amino acid ABC transporter substrate-binding protein compare
AO353_03795 +1.3 5.9 fumarate hydratase compare
AO353_09250 +1.2 4.7 exodeoxyribonuclease III compare
AO353_09745 +1.2 2.3 hypothetical protein compare
AO353_02735 +1.1 10.1 chemotaxis protein CheY compare
AO353_01220 +1.1 1.5 hypothetical protein compare
AO353_20425 +1.1 2.9 ArsC family transcriptional regulator compare
AO353_04190 +1.0 2.8 glycerol-3-phosphate dehydrogenase compare
AO353_21830 +1.0 8.7 chemotaxis protein CheY compare
AO353_17935 +1.0 3.4 hypothetical protein compare
AO353_20925 +0.9 3.1 hypothetical protein compare
AO353_26390 +0.9 2.7 glyoxalase compare
AO353_10990 +0.9 6.9 glutamate:protein symporter compare
AO353_23950 +0.9 3.2 hypothetical protein compare
AO353_26525 +0.9 1.3 hypothetical protein compare
AO353_23440 +0.9 2.3 hypothetical protein compare
AO353_09945 +0.9 4.3 LysR family transcriptional regulator compare
AO353_25355 +0.9 2.3 hypothetical protein compare
AO353_19750 +0.8 1.9 diaminopimelate epimerase compare
AO353_21750 +0.8 2.6 peptidylprolyl isomerase compare
AO353_28555 +0.8 2.0 LysR family transcriptional regulator compare
AO353_22195 +0.8 1.5 metal ABC transporter permease compare
AO353_09345 +0.8 2.1 hypothetical protein compare
AO353_26045 +0.8 2.0 hypothetical protein compare
AO353_11155 +0.8 6.7 thioesterase compare
AO353_01015 +0.8 2.0 hypothetical protein compare
AO353_21325 +0.8 4.2 patatin compare
AO353_06710 +0.8 1.5 riboflavin synthase subunit alpha compare
AO353_01810 +0.8 5.7 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_23350 +0.8 2.3 hypothetical protein compare
AO353_02570 +0.7 2.2 hypothetical protein compare
AO353_18745 +0.7 2.0 flagellar biosynthesis protein flip compare
AO353_25660 +0.7 2.9 ABC transporter substrate-binding protein compare
AO353_23510 +0.7 2.8 transcriptional regulator compare
AO353_21595 +0.7 3.9 serine/threonine protein kinase compare
AO353_00665 +0.7 2.5 adenine phosphoribosyltransferase compare
AO353_19020 +0.7 2.4 hypothetical protein compare
AO353_24000 +0.7 2.8 isochorismate synthase compare
AO353_18765 +0.7 1.7 hypothetical protein compare
AO353_19565 +0.7 2.3 vanillate O-demethylase oxidoreductase VanB compare
AO353_15450 +0.7 5.5 ubiquinol oxidase subunit II compare
AO353_27855 +0.7 1.7 MarR family transcriptional regulator compare
AO353_16765 +0.7 2.0 hypothetical protein compare
AO353_05125 +0.7 3.2 BolA family transcriptional regulator compare
AO353_02995 +0.7 4.4 succinylglutamate desuccinylase compare
AO353_27160 +0.7 2.1 Pathogenicity locus compare
AO353_21290 +0.7 1.7 hypothetical protein compare
AO353_12535 +0.6 2.0 hypothetical protein compare
AO353_09915 +0.6 4.7 long-chain acyl-CoA thioester hydrolase compare
AO353_11945 +0.6 1.0 4-oxalocrotonate tautomerase compare
AO353_09560 +0.6 1.3 type VI secretion protein compare
AO353_19505 +0.6 1.9 FAD-dependent oxidoreductase compare
AO353_01065 +0.6 3.8 acetyl-CoA acetyltransferase compare
AO353_19685 +0.6 1.7 alkylhydroperoxidase compare
AO353_06745 +0.6 1.6 zinc-binding protein compare
AO353_24605 +0.6 1.8 hypothetical protein compare
AO353_26220 +0.6 1.4 hypothetical protein compare
AO353_20590 +0.6 1.5 hydrolase compare
AO353_12930 +0.6 2.3 GlcNAc-PI de-N-acetylase compare
AO353_08195 +0.6 2.8 non-canonical purine NTP pyrophosphatase compare
AO353_23785 +0.6 0.7 hypothetical protein compare
AO353_12915 +0.6 3.9 carbamoyltransferase compare
AO353_09905 +0.6 4.1 phosphate-binding protein compare
AO353_19070 +0.6 1.8 hypothetical protein compare
AO353_15500 +0.6 4.5 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
AO353_16980 +0.6 1.8 isochorismatase compare
AO353_12575 +0.6 2.1 type II secretion system protein GspJ compare
AO353_28215 +0.6 3.1 4-aminobutyrate aminotransferase compare
AO353_23730 +0.6 1.6 hypothetical protein compare
AO353_06720 +0.6 1.5 NrdR family transcriptional regulator compare
AO353_16070 +0.5 2.4 PadR family transcriptional regulator compare
AO353_16355 +0.5 2.4 TetR family transcriptional regulator compare
AO353_29050 +0.5 2.5 2'-5' RNA ligase compare
AO353_15455 +0.5 4.6 cytochrome o ubiquinol oxidase subunit I compare
AO353_23670 +0.5 2.0 glutathione S-transferase compare
AO353_03050 +0.5 3.2 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
AO353_08775 +0.5 1.1 cell division protein ZapA compare
AO353_07515 +0.5 1.3 transporter compare
AO353_19045 +0.5 3.2 2-dehydropantoate 2-reductase compare
AO353_10725 +0.5 1.1 dodecin flavoprotein compare
AO353_22985 +0.5 1.6 hypothetical protein compare
AO353_03410 +0.5 1.4 chemotaxis protein CheY compare
AO353_20265 +0.5 1.6 spore coat protein compare
AO353_24870 +0.5 1.9 hypothetical protein compare
AO353_27935 +0.5 1.9 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_23915 +0.5 4.0 chemotaxis protein CheY compare
AO353_02765 +0.5 1.8 NAD(P)H-quinone oxidoreductase compare
AO353_06775 +0.5 3.0 dTDP-4-dehydrorhamnose reductase compare
AO353_00590 +0.5 2.6 cytochrome C oxidase Cbb3 compare
AO353_18725 +0.5 3.3 flagellar basal body protein FliL compare
AO353_07755 +0.5 2.6 betainyl-CoA thiolase (EC 3.1.2.-) (from data) compare
AO353_17160 +0.5 1.5 aspartate-semialdehyde dehydrogenase compare
AO353_19765 +0.5 2.6 hypothetical protein compare
AO353_06275 +0.5 1.8 DNA polymerase III subunit epsilon compare
AO353_00185 +0.5 1.3 phage tail protein compare
AO353_17985 +0.5 2.3 LysR family transcriptional regulator compare
AO353_03430 +0.5 1.5 methylglyoxal synthase compare
AO353_13025 +0.5 3.3 ADP-ribose pyrophosphatase compare
AO353_13740 +0.5 2.1 MFS transporter compare
AO353_15470 +0.5 4.0 protoheme IX farnesyltransferase compare
AO353_23280 +0.5 1.8 hypothetical protein compare
AO353_15825 +0.5 1.7 serine acetyltransferase compare
AO353_19335 +0.5 3.6 TetR family transcriptional regulator compare
AO353_18985 +0.5 1.4 hypothetical protein compare
AO353_13885 +0.5 2.6 bile acid:sodium symporter compare
AO353_05280 +0.5 1.3 4-carboxymuconolactone decarboxylase compare
AO353_07465 +0.5 1.2 addiction module toxin RelE compare
AO353_09660 +0.5 1.0 hypothetical protein compare
AO353_23985 +0.5 1.8 isochorismate-pyruvate lyase compare
AO353_20245 +0.5 1.4 LysR family transcriptional regulator compare
AO353_01055 +0.5 4.0 AraC family transcriptional regulator compare
AO353_09775 +0.5 1.2 hypothetical protein compare
AO353_11050 +0.5 1.8 hypothetical protein compare
AO353_04075 +0.5 2.5 electron transporter RnfG compare
AO353_26945 +0.5 0.9 transcriptional regulator compare
AO353_00345 +0.5 2.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_14740 +0.5 1.5 GTP-binding protein compare
AO353_11160 +0.5 3.0 GntR family transcriptional regulator compare
AO353_18655 +0.5 1.9 flagellar assembly protein FliT compare
AO353_13580 +0.5 1.7 copper resistance protein CopZ compare
AO353_27905 +0.5 2.1 N-formylglutamate amidohydrolase compare
AO353_22820 +0.5 3.9 NAD-glutamate dehydrogenase compare
AO353_15460 +0.5 2.9 cytochrome o ubiquinol oxidase subunit III compare
AO353_14860 +0.5 1.7 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_26070 +0.5 1.2 hypothetical protein compare
AO353_23410 +0.5 1.1 hypothetical protein compare
AO353_14915 +0.5 1.3 (2Fe-2S)-binding protein compare
AO353_23660 +0.5 1.9 hypothetical protein compare
AO353_07270 +0.5 1.2 transcriptional regulator compare
AO353_27440 +0.5 1.9 hypothetical protein compare
AO353_13940 +0.5 2.7 cytochrome D ubiquinol oxidase subunit I compare
AO353_17885 +0.4 1.1 hypothetical protein compare
AO353_19025 +0.4 3.8 acetyltransferase compare
AO353_25430 +0.4 1.9 ABC transporter permease compare
AO353_04580 +0.4 2.0 GIY-YIG nuclease compare
AO353_22255 +0.4 2.1 chloroperoxidase compare
AO353_15505 +0.4 3.4 LysR family transcriptional regulator compare
AO353_10890 +0.4 2.4 methionine ABC transporter ATP-binding protein compare
AO353_23935 +0.4 1.9 hypothetical protein compare
AO353_13660 +0.4 2.8 tRNA-dihydrouridine synthase B compare
AO353_21420 +0.4 2.1 hypothetical protein compare
AO353_25855 +0.4 2.2 peptide ABC transporter substrate-binding protein compare
AO353_27375 +0.4 1.7 DNA packaging protein compare
AO353_28015 +0.4 1.1 hypothetical protein compare
AO353_01595 +0.4 0.9 Flp pilus assembly protein CpaB compare
AO353_15280 +0.4 2.1 hypothetical protein compare
AO353_19760 +0.4 1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_25885 +0.4 1.7 sugar ABC transporter permease compare
AO353_09135 +0.4 1.2 cytochrome C compare
AO353_28670 +0.4 1.9 hypothetical protein compare
AO353_17365 +0.4 1.5 hypothetical protein compare
AO353_22835 +0.4 1.8 antibiotic biosynthesis monooxygenase compare
AO353_00260 +0.4 1.0 hypothetical protein compare
AO353_25315 +0.4 1.6 malonate decarboxylase subunit epsilon compare
AO353_12270 +0.4 1.5 histidine ammonia-lyase compare
AO353_20270 +0.4 1.5 spore coat protein compare
AO353_27155 +0.4 1.0 hypothetical protein compare
AO353_00165 +0.4 2.1 lysis protein compare
AO353_04230 +0.4 1.1 chemotaxis protein CheW compare
AO353_19280 +0.4 1.2 hypothetical protein compare
AO353_26165 +0.4 1.2 hypothetical protein compare
AO353_15050 +0.4 1.6 nitrate transport permease nrtB compare
AO353_21100 +0.4 1.3 DNA-binding protein compare
AO353_20000 +0.4 1.2 phosphoribosyltransferase compare
AO353_04825 +0.4 2.3 hypothetical protein compare
AO353_28985 +0.4 1.5 hypothetical protein compare
AO353_00580 +0.4 2.6 alpha/beta hydrolase compare
AO353_18600 +0.4 1.7 flagellar basal-body rod protein FlgG compare
AO353_22320 +0.4 2.2 hypothetical protein compare
AO353_22725 +0.4 1.4 hypothetical protein compare
AO353_00285 +0.4 2.0 Pyocin activator protein PrtN compare
AO353_25910 +0.4 1.9 Fructokinase (EC 2.7.1.4) (from data) compare
AO353_21540 +0.4 1.4 type VI secretion protein compare
AO353_00255 +0.4 1.4 hypothetical protein compare
AO353_04925 +0.4 1.9 aldolase compare
AO353_15465 +0.4 2.0 cytochrome C oxidase compare
AO353_03200 +0.4 2.3 RNA polymerase subunit sigma-24 compare
AO353_00995 +0.4 2.6 LysR family transcriptional regulator compare
AO353_19580 +0.4 1.6 AraC family transcriptional regulator compare
AO353_18645 +0.4 3.3 flagellar cap protein FliD compare
AO353_24820 +0.4 2.0 histidine kinase compare
AO353_00925 +0.4 2.7 aminodeoxychorismate synthase component I compare
AO353_18675 +0.4 2.0 flagellar hook-basal body protein FliE compare
AO353_01410 +0.4 1.2 ribonuclease E compare
AO353_28330 +0.4 1.7 carbon-nitrogen hydrolase compare
AO353_12815 +0.4 3.1 proline:sodium symporter PutP compare
AO353_01705 +0.4 1.6 alpha/beta hydrolase compare
AO353_06300 +0.4 2.4 ATP-dependent helicase compare
AO353_01960 +0.4 2.3 hypothetical protein compare
AO353_28740 +0.4 2.1 N-carbamoylputrescine amidase compare
AO353_20135 +0.4 2.3 D-alanyl-D-alanine endopeptidase compare
AO353_17100 +0.4 1.2 hypothetical protein compare
AO353_04090 +0.4 1.0 leucyl-tRNA synthetase compare
AO353_21625 +0.4 0.7 Fe/S biogenesis protein NfuA compare
AO353_17965 +0.4 1.4 hypothetical protein compare
AO353_12150 +0.4 1.9 histidine kinase compare
AO353_27940 +0.4 1.6 succinyl-CoA--3-ketoacid-CoA transferase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source m-Inositol in Pseudomonas fluorescens FW300-N2E3

For carbon source m-Inositol across organisms