Experiment set2IT032 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23545 +1.1 2.0 NADH dehydrogenase subunit D compare
CA265_RS10510 +0.7 3.6 hypothetical protein compare
CA265_RS20270 +0.7 1.2 methionine--tRNA ligase compare
CA265_RS01165 +0.7 2.0 hypothetical protein compare
CA265_RS23235 +0.7 2.7 transcriptional regulator compare
CA265_RS20280 +0.7 3.1 DoxX family protein compare
CA265_RS06405 +0.7 1.5 hypothetical protein compare
CA265_RS21060 +0.7 1.8 hypothetical protein compare
CA265_RS23045 +0.7 3.0 cold-shock protein compare
CA265_RS15200 +0.7 2.8 hypothetical protein compare
CA265_RS16140 +0.6 1.0 hypothetical protein compare
CA265_RS23675 +0.6 1.5 hypothetical protein compare
CA265_RS24920 +0.6 2.0 hypothetical protein compare
CA265_RS20585 +0.6 1.5 hypothetical protein compare
CA265_RS16105 +0.6 1.5 hypothetical protein compare
CA265_RS20315 +0.5 4.5 hypothetical protein compare
CA265_RS08570 +0.5 1.7 dehydratase compare
CA265_RS10040 +0.5 1.3 hypothetical protein compare
CA265_RS22145 +0.5 2.7 hypothetical protein compare
CA265_RS05945 +0.5 1.7 polysaccharide biosynthesis protein GtrA compare
CA265_RS18870 +0.5 2.0 hypothetical protein compare
CA265_RS14640 +0.5 1.1 UDP-glucose 4-epimerase compare
CA265_RS19665 +0.5 1.6 cysteine methyltransferase compare
CA265_RS06885 +0.5 1.0 hypothetical protein compare
CA265_RS25135 +0.5 1.9 histidine kinase compare
CA265_RS04560 +0.5 0.7 hypothetical protein compare
CA265_RS24385 +0.5 1.4 GNAT family N-acetyltransferase compare
CA265_RS25180 +0.5 2.9 hypothetical protein compare
CA265_RS04325 +0.5 2.4 hypothetical protein compare
CA265_RS06510 +0.5 2.2 hypothetical protein compare
CA265_RS23305 +0.5 0.9 hypothetical protein compare
CA265_RS04485 +0.5 1.3 hypothetical protein compare
CA265_RS04820 +0.5 3.3 GntR family transcriptional regulator compare
CA265_RS21035 +0.5 2.8 3-oxoacyl-ACP synthase compare
CA265_RS14825 +0.5 1.1 outer membrane protein assembly factor BamD compare
CA265_RS04645 +0.4 3.2 cation transporter compare
CA265_RS19670 +0.4 2.5 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
CA265_RS04705 +0.4 1.7 hypothetical protein compare
CA265_RS12625 +0.4 2.4 hypothetical protein compare
CA265_RS22895 +0.4 1.1 aminodeoxychorismate/anthranilate synthase component II compare
CA265_RS09415 +0.4 1.7 hypothetical protein compare
CA265_RS23925 +0.4 1.9 endonuclease compare
CA265_RS05140 +0.4 2.8 hypothetical protein compare
CA265_RS21330 +0.4 2.5 TetR family transcriptional regulator compare
CA265_RS04790 +0.4 2.0 hypothetical protein compare
CA265_RS19575 +0.4 0.8 glycoside hydrolase compare
CA265_RS24755 +0.4 1.9 hypothetical protein compare
CA265_RS04040 +0.4 1.5 hypothetical protein compare
CA265_RS17560 +0.4 2.9 peptidylprolyl isomerase compare
CA265_RS06030 +0.4 0.8 SelT/selW/selH selenoprotein compare
CA265_RS23140 +0.4 1.8 hypothetical protein compare
CA265_RS21220 +0.4 1.7 hypothetical protein compare
CA265_RS05485 +0.4 1.7 hypothetical protein compare
CA265_RS21065 +0.4 0.9 hypothetical protein compare
CA265_RS15900 +0.4 1.6 hypothetical protein compare
CA265_RS05985 +0.4 0.7 hypothetical protein compare
CA265_RS04000 +0.4 1.0 hypothetical protein compare
CA265_RS12825 +0.4 1.2 hypothetical protein compare
CA265_RS19405 +0.4 1.6 transcriptional regulator compare
CA265_RS24480 +0.4 1.0 hypothetical protein compare
CA265_RS03210 +0.4 2.1 hypothetical protein compare
CA265_RS17555 +0.4 2.7 hypothetical protein compare
CA265_RS10615 +0.4 1.8 diacylglycerol kinase compare
CA265_RS00055 +0.4 2.8 hypothetical protein compare
CA265_RS22120 +0.4 1.7 hypothetical protein compare
CA265_RS00640 +0.4 2.0 hypothetical protein compare
CA265_RS19760 +0.4 1.1 hypothetical protein compare
CA265_RS16940 +0.4 1.4 plasmid stabilization system protein compare
CA265_RS24195 +0.4 2.7 TetR family transcriptional regulator compare
CA265_RS17025 +0.4 0.9 hypothetical protein compare
CA265_RS01200 +0.4 1.4 hypothetical protein compare
CA265_RS18570 +0.4 2.1 hypothetical protein compare
CA265_RS20320 +0.4 3.3 hypothetical protein compare
CA265_RS16665 +0.4 1.5 hypothetical protein compare
CA265_RS02425 +0.4 1.2 GTP cyclohydrolase compare
CA265_RS20070 +0.4 1.6 NadR compare
CA265_RS03620 +0.4 2.2 imidazole glycerol phosphate synthase subunit HisH compare
CA265_RS23950 +0.4 1.5 ribonuclease HII compare
CA265_RS22050 +0.4 1.8 hypothetical protein compare
CA265_RS24995 +0.4 1.5 hypothetical protein compare
CA265_RS06040 +0.4 0.5 hypothetical protein compare
CA265_RS18185 +0.4 1.6 heme oxygenase compare
CA265_RS03385 +0.3 1.1 hypothetical protein compare
CA265_RS20650 +0.3 0.6 hypothetical protein compare
CA265_RS00465 +0.3 1.5 cupin compare
CA265_RS00515 +0.3 1.2 hypothetical protein compare
CA265_RS18225 +0.3 2.3 DNA-binding response regulator compare
CA265_RS22475 +0.3 1.7 hypothetical protein compare
CA265_RS13960 +0.3 2.1 hypothetical protein compare
CA265_RS18550 +0.3 0.4 N-acetyltransferase compare
CA265_RS20085 +0.3 2.1 peptidase M28 compare
CA265_RS24025 +0.3 1.1 hypothetical protein compare
CA265_RS09665 +0.3 2.0 hypothetical protein compare
CA265_RS14145 +0.3 1.4 hypothetical protein compare
CA265_RS15370 +0.3 1.5 glycosyl hydrolase compare
CA265_RS23670 +0.3 2.0 cyclic nucleotide-binding protein compare
CA265_RS12950 +0.3 2.2 hypothetical protein compare
CA265_RS24650 +0.3 0.8 beta-phosphoglucomutase compare
CA265_RS07755 +0.3 0.6 hypothetical protein compare
CA265_RS04425 +0.3 1.4 histidine phosphotransferase compare
CA265_RS22165 +0.3 0.5 hypothetical protein compare
CA265_RS10310 +0.3 2.4 GntR family transcriptional regulator compare
CA265_RS01950 +0.3 1.2 hypothetical protein compare
CA265_RS25045 +0.3 1.7 phytanoyl-CoA dioxygenase compare
CA265_RS07295 +0.3 2.0 hypothetical protein compare
CA265_RS13985 +0.3 1.1 hypothetical protein compare
CA265_RS19960 +0.3 1.9 hypothetical protein compare
CA265_RS15760 +0.3 2.1 peroxiredoxin compare
CA265_RS22490 +0.3 1.5 MarR family transcriptional regulator compare
CA265_RS07535 +0.3 1.0 ATPase compare
CA265_RS25400 +0.3 1.4 fatty acid desaturase compare
CA265_RS12600 +0.3 0.9 hypothetical protein compare
CA265_RS17565 +0.3 1.5 hypothetical protein compare
CA265_RS20095 +0.3 1.4 NADH oxidase compare
CA265_RS21600 +0.3 1.6 hypothetical protein compare
CA265_RS16725 +0.3 1.3 hypothetical protein compare
CA265_RS19875 +0.3 2.0 Altronate dehydratase (EC 4.2.1.7) (from data) compare
CA265_RS22180 +0.3 1.8 hypothetical protein compare
CA265_RS18485 +0.3 1.1 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS14940 +0.3 1.8 hypothetical protein compare
CA265_RS05950 +0.3 2.1 CDP-alcohol phosphatidyltransferase compare
CA265_RS03015 +0.3 1.1 tRNA-specific adenosine deaminase compare
CA265_RS03515 +0.3 0.9 Fe-S assembly protein IscX compare
CA265_RS21605 +0.3 1.7 sensor histidine kinase compare
CA265_RS00015 +0.3 1.3 hypothetical protein compare
CA265_RS19860 +0.3 1.5 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (from data) compare
CA265_RS22595 +0.3 2.2 methyltransferase type 11 compare
CA265_RS23135 +0.3 1.9 ABC transporter ATP-binding protein compare
CA265_RS08390 +0.3 2.2 dihydrodipicolinate synthase family protein compare
CA265_RS10305 +0.3 1.5 hypothetical protein compare
CA265_RS19485 +0.3 1.5 hypothetical protein compare
CA265_RS03490 +0.3 2.1 hypothetical protein compare
CA265_RS23390 +0.3 1.1 alkyl hydroperoxide reductase compare
CA265_RS03245 +0.3 1.9 two-component sensor histidine kinase compare
CA265_RS14595 +0.3 2.1 signal peptidase I compare
CA265_RS09950 +0.3 1.3 hypothetical protein compare
CA265_RS01205 +0.3 1.5 import component protein compare
CA265_RS25295 +0.3 2.0 DoxX family protein compare
CA265_RS18490 +0.3 0.9 hypothetical protein compare
CA265_RS22310 +0.3 1.6 superoxide dismutase compare
CA265_RS23430 +0.3 1.7 hypothetical protein compare
CA265_RS09320 +0.3 1.2 hypothetical protein compare
CA265_RS23680 +0.3 2.2 hypothetical protein compare
CA265_RS19535 +0.3 1.8 hypothetical protein compare
CA265_RS15640 +0.3 2.1 sugar kinase compare
CA265_RS23915 +0.3 1.5 G-D-S-L family lipolytic protein compare
CA265_RS18780 +0.3 1.0 YicC family protein compare
CA265_RS19455 +0.3 2.0 hypothetical protein compare
CA265_RS00795 +0.3 1.2 HAD family hydrolase compare
CA265_RS23980 +0.3 1.9 patatin compare
CA265_RS13850 +0.3 2.1 alpha-glucosidase compare
CA265_RS22805 +0.3 1.7 glycosyl transferase compare
CA265_RS14200 +0.3 1.8 hypothetical protein compare
CA265_RS25410 +0.3 1.7 gluconate kinase compare
CA265_RS19155 +0.3 2.0 hypothetical protein compare
CA265_RS05215 +0.3 1.0 YfcE family phosphodiesterase compare
CA265_RS12610 +0.3 2.0 hypothetical protein compare
CA265_RS20365 +0.3 0.7 hypothetical protein compare
CA265_RS19900 +0.3 1.6 pectin esterase compare
CA265_RS13270 +0.3 1.6 hypothetical protein compare
CA265_RS13200 +0.3 2.0 phosphatase PAP2 family protein compare
CA265_RS02295 +0.3 1.2 metal-binding protein compare
CA265_RS15535 +0.3 1.1 methionine sulfoxide reductase B compare
CA265_RS17275 +0.3 1.7 GDSL family lipase compare
CA265_RS09225 +0.3 1.9 PKD domain-containing protein compare
CA265_RS03265 +0.3 1.5 hypothetical protein compare
CA265_RS23470 +0.3 1.5 homoserine kinase (EC 2.7.1.39) (from data) compare
CA265_RS25030 +0.3 0.9 hypothetical protein compare
CA265_RS25115 +0.3 1.9 hypothetical protein compare
CA265_RS13500 +0.3 0.7 hypothetical protein compare
CA265_RS01680 +0.3 1.9 hypothetical protein compare
CA265_RS20800 +0.3 1.1 hypothetical protein compare
CA265_RS22800 +0.3 1.7 glycosyl transferase compare
CA265_RS22585 +0.3 1.1 hypothetical protein compare
CA265_RS16950 +0.3 1.7 hypothetical protein compare
CA265_RS11170 +0.3 1.8 hypothetical protein compare
CA265_RS12870 +0.3 1.7 hypothetical protein compare
CA265_RS13620 +0.3 1.7 hypothetical protein compare
CA265_RS21440 +0.3 1.5 peptidylprolyl isomerase compare
CA265_RS23260 +0.3 1.7 AraC family transcriptional regulator compare
CA265_RS22385 +0.3 1.6 SAM-dependent methyltransferase compare
CA265_RS18845 +0.3 1.4 GNAT family N-acetyltransferase compare
CA265_RS24980 +0.3 1.2 hypothetical protein compare
CA265_RS13330 +0.3 1.5 hypothetical protein compare
CA265_RS12590 +0.3 1.5 hypothetical protein compare
CA265_RS10900 +0.3 1.4 Lrp/AsnC family transcriptional regulator compare
CA265_RS08680 +0.3 1.2 histidinol phosphate phosphatase compare
CA265_RS18000 +0.3 1.8 hypothetical protein compare
CA265_RS19400 +0.3 1.8 hypothetical protein compare
CA265_RS07885 +0.3 1.8 response regulator compare
CA265_RS25360 +0.3 1.0 phosphoribosyltransferase compare
CA265_RS25395 +0.3 1.3 cysteine hydrolase compare
CA265_RS09330 +0.3 1.4 AAA family ATPase compare
CA265_RS00415 +0.3 1.6 cupin compare
CA265_RS08970 +0.3 1.6 hypothetical protein compare
CA265_RS04890 +0.3 1.0 hypothetical protein compare
CA265_RS11050 +0.3 1.1 hypothetical protein compare
CA265_RS06065 +0.3 1.6 family 88 glycosyl hydrolase compare
CA265_RS17195 +0.3 2.1 amidohydrolase compare
CA265_RS12225 +0.3 1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in r2a experiments