Experiment set2IT032 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +1.7 10.5 hypothetical protein compare
MMJJ_RS04005 +1.1 8.8 acetate--CoA ligase family protein compare
MMJJ_RS01855 +0.9 6.2 MBL fold metallo-hydrolase compare
MMJJ_RS08935 +0.8 1.3 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS08775 +0.8 6.1 PfkB family carbohydrate kinase compare
MMJJ_RS07935 +0.8 1.5 protein fwdD compare
MMJJ_RS07240 +0.8 6.6 MBL fold metallo-hydrolase compare
MMJJ_RS07280 +0.7 4.9 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS04375 +0.7 2.3 hypothetical protein compare
MMJJ_RS03835 +0.6 2.8 DUF504 domain-containing protein compare
MMJJ_RS05915 +0.6 2.0 multiprotein bridging factor aMBF1 compare
MMJJ_RS08830 +0.6 2.4 hypothetical protein compare
MMJJ_RS08490 +0.6 2.6 rubrerythrin family protein compare
MMJJ_RS01785 +0.6 0.8 50S ribosomal protein L14e compare
MMJJ_RS07030 +0.6 5.1 hypothetical protein compare
MMJJ_RS09300 +0.6 1.6 hypothetical protein compare
MMJJ_RS07595 +0.6 2.1 hypothetical protein compare
MMJJ_RS09120 +0.6 0.8 aspartate kinase compare
MMJJ_RS03410 +0.5 2.5 hypothetical protein compare
MMJJ_RS09370 +0.5 1.3 heavy-metal-associated domain-containing protein compare
MMJJ_RS00420 +0.5 3.3 CBS domain-containing protein compare
MMJJ_RS08470 +0.5 1.7 ferredoxin family protein compare
MMJJ_RS06950 +0.5 3.2 4-demethylwyosine synthase TYW1 compare
MMJJ_RS01590 +0.5 1.2 adenine phosphoribosyltransferase compare
MMJJ_RS08785 +0.5 3.3 D-sedoheptulose 7-phosphate isomerase compare
MMJJ_RS06500 +0.5 2.8 class I SAM-dependent methyltransferase compare
MMJJ_RS03345 +0.5 2.5 hypothetical protein compare
MMJJ_RS01395 +0.5 1.9 DUF1894 domain-containing protein compare
MMJJ_RS04195 +0.5 2.6 XTP/dITP diphosphatase compare
MMJJ_RS06455 +0.5 3.1 YeeE/YedE family protein compare
MMJJ_RS07500 +0.4 3.5 hypothetical protein compare
MMJJ_RS04585 +0.4 3.2 phenylacetate--CoA ligase compare
MMJJ_RS07185 +0.4 1.5 DUF371 domain-containing protein compare
MMJJ_RS03250 +0.4 1.1 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS00305 +0.4 2.7 chemotaxis protein CheC compare
MMJJ_RS05760 +0.4 3.3 flagellar protein F compare
MMJJ_RS03395 +0.4 1.0 hypothetical protein compare
MMJJ_RS05740 +0.4 3.0 archaellar assembly protein FlaJ compare
MMJJ_RS05750 +0.4 2.9 flagellar accessory protein FlaH compare
MMJJ_RS07010 +0.4 2.2 preprotein translocase subunit Sec61beta compare
MMJJ_RS03375 +0.4 2.4 hypothetical protein compare
MMJJ_RS07210 +0.4 2.9 AmmeMemoRadiSam system protein B compare
MMJJ_RS08780 +0.4 2.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
MMJJ_RS00840 +0.4 1.1 hypothetical protein compare
MMJJ_RS03070 +0.4 1.4 MetS family NSS transporter small subunit compare
MMJJ_RS05820 +0.4 1.9 DUF2304 domain-containing protein compare
MMJJ_RS05585 +0.4 2.3 hypothetical protein compare
MMJJ_RS06740 +0.4 1.7 energy-coupling factor ABC transporter substrate-binding protein compare
MMJJ_RS05510 +0.4 2.3 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS08730 +0.4 2.5 glycosyltransferase family 4 protein compare
MMJJ_RS05975 +0.4 2.3 sulfurtransferase TusA family protein compare
MMJJ_RS07795 +0.4 1.6 cupin domain-containing protein compare
MMJJ_RS07690 +0.3 2.4 glycosyltransferase family 4 protein compare
MMJJ_RS07750 +0.3 1.1 class III signal peptide-containing protein compare
MMJJ_RS08580 +0.3 2.0 YkgJ family cysteine cluster protein compare
MMJJ_RS05685 +0.3 1.6 class III signal peptide-containing protein compare
MMJJ_RS07680 +0.3 2.4 glucose-6-phosphate isomerase compare
MMJJ_RS01140 +0.3 1.5 helix-turn-helix domain-containing protein compare
MMJJ_RS08710 +0.3 2.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMJJ_RS05790 +0.3 1.9 flagellin compare
MMJJ_RS01745 +0.3 1.6 metal-dependent transcriptional regulator compare
MMJJ_RS06460 +0.3 2.0 cytochrome c compare
MMJJ_RS09295 +0.3 0.3 hypothetical protein compare
MMJJ_RS06800 +0.3 1.5 prefoldin subunit alpha compare
MMJJ_RS06190 +0.3 2.6 7-cyano-7-deazaguanine synthase compare
MMJJ_RS03850 +0.3 1.7 nucleoside-diphosphate kinase compare
MMJJ_RS08310 +0.3 1.6 ZIP family metal transporter compare
MMJJ_RS04815 +0.3 1.1 TIM barrel protein compare
MMJJ_RS06470 +0.3 2.1 tripartite tricarboxylate transporter permease compare
MMJJ_RS02115 +0.3 2.1 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS05900 +0.3 2.2 ATP-binding cassette domain-containing protein compare
MMJJ_RS05200 +0.3 2.3 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMJJ_RS06075 +0.3 1.6 DNA-binding protein Alba compare
MMJJ_RS07005 +0.3 1.0 transcription factor S compare
MMJJ_RS09205 +0.3 1.1 hypothetical protein compare
MMJJ_RS01100 +0.3 0.3 helix-turn-helix domain-containing protein compare
MMJJ_RS04955 +0.3 2.1 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS07405 +0.3 1.1 histone family protein compare
MMJJ_RS06515 +0.3 2.1 ribonuclease III compare
MMJJ_RS03045 +0.3 1.9 hypothetical protein compare
MMJJ_RS03725 +0.3 0.7 sulfurtransferase TusA family protein compare
MMJJ_RS07175 +0.3 2.2 DEAD/DEAH box helicase compare
MMJJ_RS04365 +0.3 1.3 helix-turn-helix transcriptional regulator compare
MMJJ_RS04480 +0.3 0.9 hypothetical protein compare
MMJJ_RS03590 +0.3 1.2 restriction endonuclease compare
MMJJ_RS05505 +0.3 2.6 hypothetical protein compare
MMJJ_RS01270 +0.3 1.7 4Fe-4S binding protein compare
MMJJ_RS08805 +0.3 1.3 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
MMJJ_RS05745 +0.3 1.9 type II/IV secretion system ATPase subunit compare
MMJJ_RS08370 +0.3 1.1 hypothetical protein compare
MMJJ_RS06280 +0.3 1.9 hypothetical protein compare
MMJJ_RS02230 +0.3 2.0 hypothetical protein compare
MMJJ_RS06540 +0.3 0.8 DUF2120 domain-containing protein compare
MMJJ_RS03605 +0.3 1.1 TIGR00297 family protein compare
MMJJ_RS07450 +0.3 1.3 hypothetical protein compare
MMJJ_RS05560 +0.3 0.7 30S ribosomal protein S27e compare
MMJJ_RS08195 +0.3 1.3 DUF4186 domain-containing protein compare
MMJJ_RS02165 +0.3 1.5 ABC transporter substrate-binding protein compare
MMJJ_RS08130 +0.2 0.2 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS06585 +0.2 1.4 alanine racemase compare
MMJJ_RS06640 +0.2 1.4 YfcE family phosphodiesterase compare
MMJJ_RS02140 +0.2 1.6 preflagellin peptidase FlaK compare
MMJJ_RS07260 +0.2 1.7 PspC domain-containing protein compare
MMJJ_RS05980 +0.2 1.5 DUF5400 domain-containing protein compare
MMJJ_RS06130 +0.2 1.1 hypothetical protein compare
MMJJ_RS06720 +0.2 1.5 mechanosensitive ion channel family protein compare
MMJJ_RS05870 +0.2 0.7 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMJJ_RS03775 +0.2 0.8 50S ribosomal protein L15e compare
MMJJ_RS03360 +0.2 0.4 hypothetical protein compare
MMJJ_RS06770 +0.2 1.8 hypothetical protein compare
MMJJ_RS03015 +0.2 1.6 Ig-like domain-containing protein compare
MMJJ_RS04165 +0.2 1.6 sodium:solute symporter compare
MMJJ_RS05755 +0.2 1.6 flagellar protein G compare
MMJJ_RS06520 +0.2 1.5 TldD/PmbA family protein compare
MMJJ_RS06285 +0.2 1.4 YchF/TatD family DNA exonuclease compare
MMJJ_RS08715 +0.2 1.2 NAD-dependent epimerase/dehydratase family protein compare
MMJJ_RS06120 +0.2 1.5 DUF4013 domain-containing protein compare
MMJJ_RS02000 +0.2 1.0 AzlD domain-containing protein compare
MMJJ_RS01095 +0.2 1.4 site-specific integrase compare
MMJJ_RS02065 +0.2 1.8 S-layer protein compare
MMJJ_RS09390 +0.2 0.7 hypothetical protein compare
MMJJ_RS03185 +0.2 0.4 alanine--tRNA ligase compare
MMJJ_RS01300 +0.2 1.4 MarR family transcriptional regulator compare
MMJJ_RS02890 +0.2 1.5 ATP-binding protein compare
MMJJ_RS08930 +0.2 1.4 5'/3'-nucleotidase SurE compare
MMJJ_RS04175 +0.2 1.1 hypothetical protein compare
MMJJ_RS01035 +0.2 1.0 hypothetical protein compare
MMJJ_RS03510 +0.2 1.4 acyl-CoA dehydratase activase compare
MMJJ_RS09230 +0.2 0.8 hypothetical protein compare
MMJJ_RS01370 +0.2 1.5 MnmC family methyltransferase compare
MMJJ_RS05785 +0.2 1.4 flagellin compare
MMJJ_RS08885 +0.2 1.4 cysteine--tRNA ligase compare
MMJJ_RS09245 +0.2 1.1 hypothetical protein compare
MMJJ_RS06735 +0.2 1.4 cobalt ECF transporter T component CbiQ compare
MMJJ_RS06210 +0.2 1.1 hypothetical protein compare
MMJJ_RS08655 +0.2 1.6 phospholipase D-like domain-containing protein compare
MMJJ_RS08750 +0.2 1.5 glycosyltransferase compare
MMJJ_RS04755 +0.2 1.4 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS00150 +0.2 1.0 DUF2180 family protein compare
MMJJ_RS06975 +0.2 0.7 protein translocase SEC61 complex subunit gamma compare
MMJJ_RS05525 +0.2 1.2 GTP-binding protein compare
MMJJ_RS05250 +0.2 1.2 HDIG domain-containing protein compare
MMJJ_RS02965 +0.2 1.2 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMJJ_RS06710 +0.2 1.5 TldD/PmbA family protein compare
MMJJ_RS00925 +0.2 0.7 hypothetical protein compare
MMJJ_RS04500 +0.2 1.4 hypothetical protein compare
MMJJ_RS04610 +0.2 1.0 ribosome assembly RNA-binding protein YhbY compare
MMJJ_RS00665 +0.2 1.7 lysine 2,3-aminomutase compare
MMJJ_RS00900 +0.2 0.7 PC4/YdbC family ssDNA-binding protein compare
MMJJ_RS03730 +0.2 0.9 SWIM zinc finger family protein compare
MMJJ_RS09065 +0.2 0.9 hypothetical protein compare
MMJJ_RS00405 +0.2 1.0 flavodoxin family protein compare
MMJJ_RS04215 +0.2 1.5 DMT family transporter compare
MMJJ_RS07205 +0.2 0.9 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS04295 +0.2 1.4 DUF2202 domain-containing protein compare
MMJJ_RS05405 +0.2 1.3 DNA cytosine methyltransferase compare
MMJJ_RS04260 +0.2 1.3 molybdopterin molybdotransferase MoeA compare
MMJJ_RS00635 +0.2 1.3 ABC transporter permease subunit compare
MMJJ_RS08100 +0.2 1.1 hypothetical protein compare
MMJJ_RS06055 +0.2 1.2 S-methyl-5-thioribose-1-phosphate isomerase compare
MMJJ_RS05925 +0.2 1.4 DUF2099 family protein compare
MMJJ_RS03025 +0.2 1.5 Ig-like domain-containing protein compare
MMJJ_RS02340 +0.2 1.2 SAM-dependent methyltransferase compare
MMJJ_RS00890 +0.2 1.2 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS08515 +0.2 0.7 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMJJ_RS07760 +0.2 1.1 GNAT family N-acetyltransferase compare
MMJJ_RS04390 +0.2 1.3 rhomboid family intramembrane serine protease compare
MMJJ_RS05420 +0.2 0.4 DNA-directed DNA polymerase II small subunit compare
MMJJ_RS07170 +0.2 0.7 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS09380 +0.2 0.4 hypothetical protein compare
MMJJ_RS07985 +0.2 0.8 hypothetical protein compare
MMJJ_RS00780 +0.2 1.1 M48 family metallopeptidase compare
MMJJ_RS06205 +0.2 1.2 EamA family transporter compare
MMJJ_RS06450 +0.2 1.1 DUF3343 domain-containing protein compare
MMJJ_RS05160 +0.2 0.6 RNA-binding protein compare
MMJJ_RS06745 +0.2 0.9 energy-coupling factor ABC transporter permease compare
MMJJ_RS09015 +0.2 1.0 SPFH domain-containing protein compare
MMJJ_RS03040 +0.2 1.2 lactate utilization protein compare
MMJJ_RS01265 +0.2 0.9 cupin domain-containing protein compare
MMJJ_RS06090 +0.2 1.0 hypothetical protein compare
MMJJ_RS05815 +0.2 0.8 hypothetical protein compare
MMJJ_RS00630 +0.2 1.1 betaine/proline/choline family ABC transporter ATP-binding protein compare
MMJJ_RS08015 +0.2 0.9 HAD family hydrolase compare
MMJJ_RS06810 +0.2 1.2 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS01125 +0.2 0.7 hypothetical protein compare
MMJJ_RS05280 +0.2 0.2 hypothetical protein compare
MMJJ_RS08390 +0.2 0.6 carboxymuconolactone decarboxylase family protein compare
MMJJ_RS04690 +0.2 1.2 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS05500 +0.2 1.4 hypothetical protein compare
MMJJ_RS02265 +0.2 1.1 hypothetical protein compare
MMJJ_RS04070 +0.2 1.4 DUF2341 domain-containing protein compare
MMJJ_RS03585 +0.2 0.2 methanogenesis marker 6 protein compare
MMJJ_RS04510 +0.2 1.1 hypothetical protein compare
MMJJ_RS00500 +0.2 0.6 GNAT family N-acetyltransferase compare
MMJJ_RS06160 +0.2 1.1 stage II sporulation protein M compare
MMJJ_RS06580 +0.2 1.0 alanine dehydrogenase compare
MMJJ_RS03750 +0.2 1.0 rubredoxin compare
MMJJ_RS06665 +0.2 0.6 DUF3236 domain-containing protein compare
MMJJ_RS02185 +0.2 0.9 TIGR00296 family protein compare
MMJJ_RS04300 +0.2 0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms