Experiment set2IT031 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Dimethyl Sulfoxide 7.5 vol%

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS14415 +1.9 15.2 pseudouridine synthase compare
CA265_RS23750 +1.6 7.3 translational GTPase TypA compare
CA265_RS13020 +1.3 9.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS09480 +1.3 10.8 magnesium transporter compare
CA265_RS13985 +1.1 2.5 hypothetical protein compare
CA265_RS19755 +1.1 4.6 hypothetical protein compare
CA265_RS14625 +1.0 7.6 hypothetical protein compare
CA265_RS23565 +1.0 2.6 NADH dehydrogenase compare
CA265_RS18135 +1.0 2.7 uroporphyrinogen-III synthase compare
CA265_RS24230 +0.9 7.5 RNA polymerase sigma factor compare
CA265_RS00650 +0.9 4.1 hypothetical protein compare
CA265_RS09950 +0.9 3.9 hypothetical protein compare
CA265_RS25110 +0.9 5.8 polyprenyl synthetase compare
CA265_RS15010 +0.9 5.7 hypothetical protein compare
CA265_RS24770 +0.9 2.7 hypothetical protein compare
CA265_RS05725 +0.9 4.7 hypothetical protein compare
CA265_RS08685 +0.8 6.7 fructose-6-phosphate aldolase compare
CA265_RS07460 +0.8 4.7 deoxynucleoside kinase compare
CA265_RS06010 +0.8 3.7 hypothetical protein compare
CA265_RS22165 +0.8 1.2 hypothetical protein compare
CA265_RS21060 +0.8 2.7 hypothetical protein compare
CA265_RS22635 +0.8 2.0 phosphoserine phosphatase (EC 3.1.3.3) (from data) compare
CA265_RS20355 +0.8 2.3 hypothetical protein compare
CA265_RS17690 +0.7 4.8 DNA-binding response regulator compare
CA265_RS17695 +0.7 5.1 hypothetical protein compare
CA265_RS15895 +0.7 2.9 hypothetical protein compare
CA265_RS16155 +0.7 3.1 tRNA pseudouridine(55) synthase TruB compare
CA265_RS19345 +0.7 4.9 hypothetical protein compare
CA265_RS24650 +0.7 3.5 beta-phosphoglucomutase compare
CA265_RS20610 +0.6 1.8 hypothetical protein compare
CA265_RS08860 +0.6 4.9 hypothetical protein compare
CA265_RS18760 +0.6 2.9 ribonuclease III compare
CA265_RS24920 +0.6 2.3 hypothetical protein compare
CA265_RS21675 +0.6 4.3 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
CA265_RS23560 +0.6 3.4 DNA-binding protein compare
CA265_RS02110 +0.6 1.3 hypothetical protein compare
CA265_RS22630 +0.6 2.4 nucleoside-diphosphate sugar epimerase compare
CA265_RS22010 +0.6 1.3 hypothetical protein compare
CA265_RS18270 +0.6 2.2 hypothetical protein compare
CA265_RS21065 +0.6 2.4 hypothetical protein compare
CA265_RS07875 +0.6 4.2 FAD-dependent oxidoreductase compare
CA265_RS10990 +0.6 3.0 hypothetical protein compare
CA265_RS00465 +0.6 2.2 cupin compare
CA265_RS19955 +0.6 1.9 hypothetical protein compare
CA265_RS12740 +0.6 1.4 hypothetical protein compare
CA265_RS06200 +0.6 3.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
CA265_RS05660 +0.6 4.3 DNA-binding response regulator compare
CA265_RS15580 +0.6 3.2 tRNA pseudouridine(38-40) synthase TruA compare
CA265_RS06885 +0.5 1.1 hypothetical protein compare
CA265_RS22035 +0.5 1.8 hypothetical protein compare
CA265_RS01560 +0.5 2.3 circadian clock protein KaiB compare
CA265_RS02795 +0.5 1.3 hypothetical protein compare
CA265_RS04140 +0.5 3.8 glycogen synthase compare
CA265_RS21515 +0.5 3.6 alanine dehydrogenase compare
CA265_RS11120 +0.5 3.4 phosphohydrolase compare
CA265_RS06395 +0.5 2.8 hypothetical protein compare
CA265_RS15900 +0.5 1.1 hypothetical protein compare
CA265_RS19860 +0.5 2.0 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (from data) compare
CA265_RS05655 +0.5 4.0 hypothetical protein compare
CA265_RS17950 +0.5 2.3 hypothetical protein compare
CA265_RS04305 +0.5 1.6 hypothetical protein compare
CA265_RS15035 +0.5 2.0 prevent-host-death protein compare
CA265_RS19350 +0.5 3.6 ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member compare
CA265_RS18235 +0.5 4.0 peptidase compare
CA265_RS07785 +0.5 2.8 hypothetical protein compare
CA265_RS12985 +0.5 2.5 hypothetical protein compare
CA265_RS18805 +0.5 1.4 hypothetical protein compare
CA265_RS20745 +0.5 1.3 conjugative transposon protein TraK compare
CA265_RS17155 +0.5 2.1 glyoxalase compare
CA265_RS18870 +0.5 1.7 hypothetical protein compare
CA265_RS16005 +0.5 2.6 hypothetical protein compare
CA265_RS17200 +0.5 2.2 DNA mismatch repair protein MutL compare
CA265_RS10665 +0.5 2.4 Rossman fold protein, TIGR00730 family compare
CA265_RS19530 +0.5 3.5 asparaginase compare
CA265_RS12330 +0.5 1.2 response regulator compare
CA265_RS09395 +0.5 2.3 hypothetical protein compare
CA265_RS23145 +0.5 2.3 hypothetical protein compare
CA265_RS19815 +0.5 2.9 RlmI/RlmK family 23S rRNA methyltransferase compare
CA265_RS25060 +0.4 2.0 hypothetical protein compare
CA265_RS15535 +0.4 1.3 methionine sulfoxide reductase B compare
CA265_RS20270 +0.4 1.4 methionine--tRNA ligase compare
CA265_RS12665 +0.4 0.9 cold-shock protein compare
CA265_RS14015 +0.4 1.7 transcriptional regulator compare
CA265_RS24055 +0.4 1.8 GNAT family N-acetyltransferase compare
CA265_RS11170 +0.4 2.8 hypothetical protein compare
CA265_RS10170 +0.4 1.2 hypothetical protein compare
CA265_RS20890 +0.4 0.7 MRP family ATP-binding protein compare
CA265_RS19670 +0.4 2.4 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
CA265_RS12000 +0.4 2.8 hypothetical protein compare
CA265_RS00665 +0.4 1.5 lysine transporter LysE compare
CA265_RS09650 +0.4 1.1 diaminopimelate decarboxylase compare
CA265_RS24895 +0.4 2.5 hypothetical protein compare
CA265_RS07840 +0.4 2.4 hypothetical protein compare
CA265_RS10315 +0.4 1.7 hypothetical protein compare
CA265_RS03815 +0.4 2.2 AraC family transcriptional regulator compare
CA265_RS05985 +0.4 0.9 hypothetical protein compare
CA265_RS15495 +0.4 2.1 hypothetical protein compare
CA265_RS09415 +0.4 1.7 hypothetical protein compare
CA265_RS19105 +0.4 1.8 hypothetical protein compare
CA265_RS06265 +0.4 0.8 cold-shock protein compare
CA265_RS07680 +0.4 2.9 DNA polymerase III subunit epsilon compare
CA265_RS06510 +0.4 2.3 hypothetical protein compare
CA265_RS25265 +0.4 1.7 hypothetical protein compare
CA265_RS09000 +0.4 1.1 hypothetical protein compare
CA265_RS21625 +0.4 3.2 histidine kinase compare
CA265_RS24675 +0.4 1.1 RNA polymerase compare
CA265_RS16400 +0.4 2.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
CA265_RS18485 +0.4 1.5 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS09010 +0.4 2.0 3-phosphoglycerate dehydrogenase compare
CA265_RS02960 +0.4 1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CA265_RS05730 +0.4 1.9 hypothetical protein compare
CA265_RS06270 +0.4 2.8 hypothetical protein compare
CA265_RS10985 +0.4 2.0 hypothetical protein compare
CA265_RS16470 +0.4 2.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS18185 +0.4 1.9 heme oxygenase compare
CA265_RS02425 +0.4 0.9 GTP cyclohydrolase compare
CA265_RS22890 +0.4 1.6 anthranilate synthase component I compare
CA265_RS07695 +0.4 1.8 tRNA epoxyqueuosine(34) reductase QueG compare
CA265_RS10610 +0.4 2.9 hypothetical protein compare
CA265_RS05890 +0.4 2.2 PA-phosphatase compare
CA265_RS18820 +0.4 2.0 tRNA threonylcarbamoyladenosine dehydratase compare
CA265_RS08445 +0.4 0.7 endonuclease compare
CA265_RS13270 +0.4 1.4 hypothetical protein compare
CA265_RS18080 +0.4 2.0 hypothetical protein compare
CA265_RS19610 +0.4 1.0 hypothetical protein compare
CA265_RS00285 +0.4 1.6 hypothetical protein compare
CA265_RS08875 +0.4 1.2 tetratricopeptide repeat protein compare
CA265_RS08755 +0.4 1.3 response regulator compare
CA265_RS09310 +0.4 1.8 pseudouridylate synthase compare
CA265_RS15370 +0.4 1.8 glycosyl hydrolase compare
CA265_RS16035 +0.4 2.3 oxidoreductase compare
CA265_RS20785 +0.4 1.6 hypothetical protein compare
CA265_RS02230 +0.4 1.8 hypothetical protein compare
CA265_RS14335 +0.4 1.9 alcohol dehydrogenase compare
CA265_RS21080 +0.4 1.4 hypothetical protein compare
CA265_RS09165 +0.4 2.1 AAA family ATPase compare
CA265_RS24845 +0.4 1.2 STAS/SEC14 domain-containing protein compare
CA265_RS24135 +0.3 2.1 DNA-binding response regulator compare
CA265_RS10310 +0.3 2.4 GntR family transcriptional regulator compare
CA265_RS20095 +0.3 1.7 NADH oxidase compare
CA265_RS25040 +0.3 1.8 excinuclease ABC subunit C compare
CA265_RS12825 +0.3 1.1 hypothetical protein compare
CA265_RS00225 +0.3 1.9 potassium-transporting ATPase subunit C compare
CA265_RS07515 +0.3 2.0 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS16380 +0.3 2.1 efflux transporter periplasmic adaptor subunit compare
CA265_RS13285 +0.3 2.3 magnesium transporter compare
CA265_RS03270 +0.3 1.9 hypothetical protein compare
CA265_RS03810 +0.3 1.9 hypothetical protein compare
CA265_RS13575 +0.3 1.9 hypothetical protein compare
CA265_RS17390 +0.3 1.5 PadR family transcriptional regulator compare
CA265_RS03715 +0.3 0.9 hypothetical protein compare
CA265_RS23875 +0.3 1.7 hypothetical protein compare
CA265_RS24995 +0.3 1.7 hypothetical protein compare
CA265_RS04375 +0.3 1.7 cystathionine beta-synthase compare
CA265_RS24955 +0.3 1.4 methyltransferase type 11 compare
CA265_RS02655 +0.3 1.3 hypothetical protein compare
CA265_RS12780 +0.3 1.1 hypothetical protein compare
CA265_RS19940 +0.3 2.6 hypothetical protein compare
CA265_RS03280 +0.3 1.3 hypothetical protein compare
CA265_RS18555 +0.3 0.9 hypothetical protein compare
CA265_RS15565 +0.3 2.3 beta-aspartyl-peptidase compare
CA265_RS20315 +0.3 2.6 hypothetical protein compare
CA265_RS00395 +0.3 1.1 hypothetical protein compare
CA265_RS00265 +0.3 1.7 RNA polymerase sigma-70 factor compare
CA265_RS25140 +0.3 1.5 hypothetical protein compare
CA265_RS12440 +0.3 1.2 hypothetical protein compare
CA265_RS19590 +0.3 1.4 hypothetical protein compare
CA265_RS02295 +0.3 1.7 metal-binding protein compare
CA265_RS09890 +0.3 2.0 short-chain dehydrogenase compare
CA265_RS06220 +0.3 1.5 NifU family protein compare
CA265_RS18570 +0.3 1.4 hypothetical protein compare
CA265_RS04780 +0.3 1.4 polyketide cyclase compare
CA265_RS18545 +0.3 1.7 argininosuccinate synthase compare
CA265_RS06535 +0.3 2.0 hypothetical protein compare
CA265_RS13190 +0.3 2.0 hypothetical protein compare
CA265_RS05100 +0.3 2.0 threonylcarbamoyl-AMP synthase compare
CA265_RS21395 +0.3 0.8 hypothetical protein compare
CA265_RS22720 +0.3 1.1 hypothetical protein compare
CA265_RS20010 +0.3 1.1 methylmalonyl-CoA mutase compare
CA265_RS20725 +0.3 1.0 hypothetical protein compare
CA265_RS09330 +0.3 1.6 AAA family ATPase compare
CA265_RS20100 +0.3 1.5 hypothetical protein compare
CA265_RS22905 +0.3 0.9 GTPase HflX compare
CA265_RS00200 +0.3 1.3 N-acetyltransferase compare
CA265_RS21435 +0.3 1.0 hypothetical protein compare
CA265_RS18985 +0.3 2.0 hypothetical protein compare
CA265_RS03180 +0.3 1.3 hypothetical protein compare
CA265_RS03360 +0.3 1.3 hypothetical protein compare
CA265_RS23895 +0.3 1.4 preprotein translocase compare
CA265_RS20465 +0.3 0.5 hypothetical protein compare
CA265_RS11485 +0.3 1.4 hypothetical protein compare
CA265_RS01220 +0.3 0.8 hypothetical protein compare
CA265_RS23210 +0.3 2.1 hypothetical protein compare
CA265_RS10545 +0.3 1.2 hypothetical protein compare
CA265_RS15715 +0.3 1.8 hypothetical protein compare
CA265_RS05845 +0.3 1.8 hypothetical protein compare
CA265_RS19400 +0.3 2.0 hypothetical protein compare
CA265_RS14885 +0.3 1.9 hypothetical protein compare
CA265_RS18115 +0.3 1.8 gliding motility protein GldN compare
CA265_RS08660 +0.3 0.9 glyoxalase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Dimethyl Sulfoxide in Pedobacter sp. GW460-11-11-14-LB5

For stress Dimethyl Sulfoxide across organisms