Experiment set2IT030 for Pseudomonas fluorescens FW300-N2E2

Compare to:

casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4047 -4.3 -9.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4825 -3.9 -11.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_71 -3.8 -7.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4826 -3.7 -10.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4048 -3.7 -10.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2277 -3.2 -4.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3248 -3.1 -7.5 Probable transmembrane protein compare
Pf6N2E2_4762 -2.4 -4.0 Biotin synthesis protein BioH compare
Pf6N2E2_4759 -2.4 -14.5 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5527 -2.3 -4.8 Cold shock protein CspC compare
Pf6N2E2_5950 -2.3 -4.7 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2753 -2.2 -4.5 HtrA protease/chaperone protein compare
Pf6N2E2_5156 -2.1 -3.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2189 -2.0 -6.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5728 -1.9 -4.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2217 -1.8 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3349 -1.8 -3.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3696 -1.7 -1.6 hypothetical protein compare
Pf6N2E2_4761 -1.7 -8.3 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5153 -1.7 -6.6 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_3984 -1.6 -8.1 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5242 -1.6 -2.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4009 -1.5 -9.0 GGDEF domain protein compare
Pf6N2E2_5006 -1.5 -7.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4763 -1.5 -8.0 Biotin synthesis protein BioC compare
Pf6N2E2_4764 -1.5 -5.6 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4631 -1.5 -6.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_309 -1.4 -2.7 FIG00957702: hypothetical protein compare
Pf6N2E2_5001 -1.4 -2.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4204 -1.4 -2.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2473 -1.3 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_4416 -1.3 -3.0 Tyrosine recombinase XerC compare
Pf6N2E2_178 -1.2 -1.4 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3257 -1.2 -3.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4059 -1.2 -1.5 DNA-binding protein HU-alpha compare
Pf6N2E2_434 -1.2 -3.6 hypothetical protein compare
Pf6N2E2_2218 -1.2 -4.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3282 -1.2 -2.7 FIG005080: Possible exported protein compare
Pf6N2E2_3932 -1.2 -6.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5579 -1.1 -5.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_6045 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_1147 -1.1 -1.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4803 -1.0 -1.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3346 -1.0 -4.1 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_5252 -1.0 -1.7 FIG00956396: hypothetical protein compare
Pf6N2E2_4206 -1.0 -2.0 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4071 -1.0 -3.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_579 -1.0 -2.4 FIG00962753: hypothetical protein compare
Pf6N2E2_4372 -1.0 -4.5 FIG00460773: hypothetical protein compare
Pf6N2E2_5553 -1.0 -5.1 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_288 -1.0 -2.3 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_6063 -1.0 -5.6 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3899 -0.9 -5.3 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5406 -0.9 -2.0 FIG00958224: hypothetical protein compare
Pf6N2E2_3786 -0.9 -3.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_1490 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_5130 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_5342 -0.9 -2.0 21 kDa hemolysin precursor compare
Pf6N2E2_3635 -0.9 -2.7 FIG00953138: hypothetical protein compare
Pf6N2E2_3630 -0.9 -3.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2927 -0.9 -1.5 Putative signal peptide protein compare
Pf6N2E2_4640 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_6061 -0.9 -4.7 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_5291 -0.9 -7.2 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_5536 -0.9 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_1014 -0.8 -2.0 Nitrate/nitrite transporter compare
Pf6N2E2_3300 -0.8 -2.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_6095 -0.8 -2.5 tRNA-Asn-GTT compare
Pf6N2E2_3461 -0.8 -1.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_160 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_5292 -0.8 -4.0 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_6140 -0.8 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_1584 -0.8 -2.5 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_1315 -0.8 -1.9 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_3941 -0.8 -2.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_478 -0.8 -2.6 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_70 -0.8 -2.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5014 -0.8 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4579 -0.8 -2.3 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5316 -0.8 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3661 -0.7 -2.9 hypothetical protein compare
Pf6N2E2_2675 -0.7 -1.1 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_241 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_4638 -0.7 -2.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3835 -0.7 -3.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3908 -0.7 -4.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2062 -0.7 -2.2 FIG00955561: hypothetical protein compare
Pf6N2E2_1652 -0.7 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_402 -0.7 -3.5 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_5190 -0.7 -4.7 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_1056 -0.7 -0.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4797 -0.7 -1.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2080 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_3820 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_2527 -0.7 -2.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_479 -0.7 -2.1 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_2447 -0.7 -3.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_302 -0.7 -3.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5331 -0.7 -3.7 ATPase, AFG1 family compare
Pf6N2E2_5705 -0.7 -1.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5328 -0.7 -3.0 FIG00958649: hypothetical protein compare
Pf6N2E2_3782 -0.7 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_724 -0.7 -1.6 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_5073 -0.7 -1.8 Large-conductance mechanosensitive channel compare
Pf6N2E2_480 -0.7 -4.7 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (from data) compare
Pf6N2E2_2324 -0.7 -2.3 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_3240 -0.7 -1.2 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2193 -0.7 -2.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_1136 -0.6 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_3472 -0.6 -2.2 Probable short-chain dehydrogenase compare
Pf6N2E2_2194 -0.6 -3.5 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_89 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_2465 -0.6 -3.6 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5157 -0.6 -4.5 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2264 -0.6 -2.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5520 -0.6 -2.8 Sensory box histidine kinase compare
Pf6N2E2_417 -0.6 -2.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_2984 -0.6 -1.8 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2688 -0.6 -2.2 YD repeat protein compare
Pf6N2E2_2790 -0.6 -1.9 Helix-turn-helix motif compare
Pf6N2E2_5993 -0.6 -1.8 FIG00957412: hypothetical protein compare
Pf6N2E2_2340 -0.6 -1.7 Transcriptional regulator, GntR family compare
Pf6N2E2_2706 -0.6 -1.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4747 -0.6 -1.7 Transmembrane sensor compare
Pf6N2E2_33 -0.6 -2.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_6064 -0.6 -2.7 2-methylaconitate isomerase compare
Pf6N2E2_624 -0.6 -3.4 hypothetical protein PA3071 compare
Pf6N2E2_5955 -0.6 -3.1 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_3770 -0.6 -1.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_5756 -0.6 -2.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4993 -0.6 -1.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2736 -0.6 -2.9 hypothetical protein compare
Pf6N2E2_1705 -0.6 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_1875 -0.6 -1.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_6062 -0.6 -3.1 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_5337 -0.6 -2.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4618 -0.6 -2.0 Chemotaxis signal transduction protein compare
Pf6N2E2_3807 -0.6 -2.7 Histidine utilization repressor compare
Pf6N2E2_5338 -0.6 -3.9 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4454 -0.6 -2.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1316 -0.6 -2.7 P-hydroxyphenylacetate hydroxylase C1:reductase component compare
Pf6N2E2_4417 -0.6 -2.6 Protein of unknown function DUF484 compare
Pf6N2E2_5840 -0.6 -2.6 hypothetical protein compare
Pf6N2E2_2320 -0.6 -1.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3799 -0.6 -1.9 Histidine ammonia-lyase (EC 4.3.1.3) (from data) compare
Pf6N2E2_2674 -0.6 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_3762 -0.6 -3.2 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_4205 -0.6 -2.6 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3810 -0.6 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1323 -0.6 -1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4305 -0.6 -1.0 FIG00959590: hypothetical protein compare
Pf6N2E2_647 -0.6 -1.5 General secretion pathway protein G compare
Pf6N2E2_603 -0.6 -2.3 FIG00953934: hypothetical protein compare
Pf6N2E2_84 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_6093 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_2002 -0.6 -2.1 hypothetical protein compare
Pf6N2E2_4187 -0.6 -2.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4684 -0.6 -2.8 hypothetical protein compare
Pf6N2E2_1065 -0.6 -2.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4999 -0.6 -3.2 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3183 -0.6 -1.9 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_4077 -0.6 -1.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1932 -0.5 -2.2 Transcriptional regulator, IclR family compare
Pf6N2E2_2723 -0.5 -2.5 YcgN (Fragment) compare
Pf6N2E2_3060 -0.5 -1.8 Outer membrane protein H precursor compare
Pf6N2E2_2192 -0.5 -3.3 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_4160 -0.5 -1.0 Cytochrome c5 compare
Pf6N2E2_1696 -0.5 -1.6 Alkanesulfonates-binding protein compare
Pf6N2E2_3312 -0.5 -2.4 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_2367 -0.5 -1.5 hypothetical protein compare
Pf6N2E2_2059 -0.5 -1.8 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1987 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_4351 -0.5 -3.6 Predicted signal transduction protein compare
Pf6N2E2_4145 -0.5 -1.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_3570 -0.5 -3.0 Urease accessory protein UreE compare
Pf6N2E2_504 -0.5 -1.3 DNA-binding response regulator compare
Pf6N2E2_1545 -0.5 -2.4 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_319 -0.5 -2.1 DUF1850 domain-containing protein compare
Pf6N2E2_4612 -0.5 -2.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3326 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_686 -0.5 -2.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2073 -0.5 -3.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4414 -0.5 -1.6 FIG00953808: hypothetical protein compare
Pf6N2E2_3611 -0.5 -0.9 HflC protein compare
Pf6N2E2_1298 -0.5 -2.0 Xanthine transporter,putative compare
Pf6N2E2_4110 -0.5 -2.1 FIG01201438: hypothetical protein compare
Pf6N2E2_1670 -0.5 -1.4 conserved membrane protein compare
Pf6N2E2_81 -0.5 -1.6 hypothetical protein compare
Pf6N2E2_5428 -0.5 -3.2 DNA recombination and repair protein RecO compare
Pf6N2E2_2273 -0.5 -2.8 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf6N2E2_4049 -0.5 -3.2 Glycine cleavage system transcriptional activator compare
Pf6N2E2_1821 -0.5 -1.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2981 -0.5 -1.8 FIG00956655: hypothetical protein compare
Pf6N2E2_1012 -0.5 -2.0 hypothetical protein compare
Pf6N2E2_3498 -0.5 -1.0 FIG00953349: hypothetical protein compare
Pf6N2E2_4448 -0.5 -1.4 probable P23 protein compare
Pf6N2E2_2986 -0.5 -2.0 Transcriptional regulator, LuxR family compare
Pf6N2E2_2756 -0.5 -2.8 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5841 -0.5 -0.7 GlcG protein compare
Pf6N2E2_3869 -0.5 -3.8 Branched-chain amino acid transport protein AzlC compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source casamino acids across organisms