Experiment set2IT029 for Pseudomonas fluorescens FW300-N2E2

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Carnitine Hydrochloride carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_4686 -6.1 -10.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain conserved
Pf6N2E2_4689 -5.9 -9.8 L-carnitine 3-dehydrogenase, B subunit (EC 1.1.1.108) (from data) conserved
Pf6N2E2_4692 -5.6 -10.0 dehydrocarnitine cleavage enzyme (EC 2.3.1.-) (from data) conserved
Pf6N2E2_4690 -5.5 -12.2 L-carnitine 3-dehydrogenase, A subunit (EC 1.1.1.108) (from data) conserved
Pf6N2E2_4718 -5.2 -8.4 Sarcosine oxidase beta subunit (EC 1.5.3.1) conserved
Pf6N2E2_4694 -5.1 -6.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain conserved
Pf6N2E2_4681 -5.0 -9.3 ABC transporter for Carnitine, ATPase component (from data) conserved
Pf6N2E2_4704 -4.9 -14.9 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) conserved
Pf6N2E2_4705 -4.7 -9.9 Electron transfer flavoprotein, alpha subunit conserved
Pf6N2E2_4701 -4.5 -11.9 FIG00953113: hypothetical protein conserved
Pf6N2E2_4714 -4.4 -13.0 GbcB Glycine betaine demethylase subunit B conserved
Pf6N2E2_4713 -4.3 -10.6 GbcA Glycine betaine demethylase subunit A conserved
Pf6N2E2_4717 -3.9 -8.9 Serine hydroxymethyltransferase (EC 2.1.2.1) conserved
Pf6N2E2_4702 -3.9 -14.6 DgcA Dimethylglycine demethylase subunit A conserved
Pf6N2E2_4720 -3.9 -17.9 Sarcosine oxidase alpha subunit (EC 1.5.3.1) conserved
Pf6N2E2_5260 -3.8 -8.1 Phosphate acetyltransferase (EC 2.3.1.8) conserved
Pf6N2E2_4719 -3.8 -8.7 Sarcosine oxidase delta subunit (EC 1.5.3.1) conserved
Pf6N2E2_4700 -3.7 -8.2 Microsomal dipeptidase (EC 3.4.13.19) conserved
Pf6N2E2_4693 -3.7 -5.7 ABC transporter for Carnitine Hydrochloride, periplasmic substrate-binding component (from data) conserved
Pf6N2E2_4683 -3.6 -8.3 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) conserved
Pf6N2E2_2112 -2.9 -7.5 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) conserved
Pf6N2E2_2042 -1.7 -11.2 Acetoacetyl-CoA synthetase (EC 6.2.1.16) conserved
Pf6N2E2_3045 -1.4 -8.0 Transcriptional regulator, LysR family, in formaldehyde detoxification operon compare
Pf6N2E2_4685 -1.3 -7.8 L-serine dehydratase (EC 4.3.1.17) conserved
Pf6N2E2_3044 -1.3 -6.7 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Pf6N2E2_2040 -1.2 -7.2 D-beta-hydroxybutyrate permease compare
Pf6N2E2_4688 +1.4 7.8 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare


Specific phenotypes for carbon source Carnitine Hydrochloride across organisms