Experiment set2IT029 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20540 -4.5 -5.3 aromatic amino acid aminotransferase compare
AO353_20665 -4.1 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12090 -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20625 -4.0 -2.8 3-isopropylmalate dehydratase compare
AO353_08185 -4.0 -8.1 methionine biosynthesis protein MetW compare
AO353_10670 -4.0 -7.2 shikimate dehydrogenase compare
AO353_07230 -4.0 -13.8 anthranilate synthase compare
AO353_12070 -3.9 -7.1 imidazoleglycerol-phosphate dehydratase compare
AO353_07220 -3.9 -7.5 anthranilate synthase compare
AO353_13070 -3.9 -8.3 phosphoserine phosphatase compare
AO353_12810 -3.9 -14.1 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) conserved
AO353_12085 -3.8 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_13165 -3.8 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
AO353_05115 -3.8 -9.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20695 -3.8 -6.2 O-succinylhomoserine sulfhydrylase compare
AO353_22820 -3.6 -17.6 NAD-glutamate dehydrogenase compare
AO353_20635 -3.6 -9.9 3-isopropylmalate dehydrogenase compare
AO353_14505 -3.5 -11.6 ketol-acid reductoisomerase compare
AO353_12360 -3.5 -8.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_12365 -3.5 -4.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_07210 -3.5 -5.8 indole-3-glycerol-phosphate synthase compare
AO353_02075 -3.4 -10.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08345 -3.4 -9.6 dihydroxy-acid dehydratase compare
AO353_08685 -3.4 -8.7 N-acetylglutamate synthase compare
AO353_24130 -3.3 -3.8 hypothetical protein compare
AO353_08180 -3.2 -13.4 homoserine O-acetyltransferase compare
AO353_20620 -3.2 -7.0 isopropylmalate isomerase compare
AO353_10710 -3.2 -4.3 tryptophan synthase subunit beta compare
AO353_08510 -3.2 -4.8 3-phosphoglycerate dehydrogenase compare
AO353_07215 -3.2 -7.6 anthranilate phosphoribosyltransferase compare
AO353_04155 -3.1 -11.9 ornithine carbamoyltransferase compare
AO353_05110 -3.1 -11.1 histidinol dehydrogenase compare
AO353_08475 -3.0 -10.1 phosphoserine phosphatase compare
AO353_02070 -3.0 -7.7 prephenate dehydratase compare
AO353_09240 -3.0 -2.9 acetylglutamate kinase compare
AO353_12075 -3.0 -8.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14370 -3.0 -7.1 glucose-6-phosphate isomerase compare
AO353_14495 -3.0 -10.1 acetolactate synthase 3 catalytic subunit compare
AO353_07155 -2.9 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_00430 -2.8 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_14500 -2.8 -7.2 acetolactate synthase 3 regulatory subunit compare
AO353_12460 -2.7 -8.8 malate dehydrogenase compare
AO353_12500 -2.7 -1.8 shikimate kinase compare
AO353_15925 -2.7 -11.1 2-isopropylmalate synthase compare
AO353_08015 -2.7 -7.1 5,10-methylenetetrahydrofolate reductase compare
AO353_04105 -2.6 -8.7 argininosuccinate synthase compare
AO353_08780 -2.6 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_14400 -2.6 -4.8 Fis family transcriptional regulator compare
AO353_09000 -2.6 -5.7 argininosuccinate lyase compare
AO353_20175 -2.5 -4.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_02685 -2.3 -4.3 phosphoribosylglycinamide formyltransferase compare
AO353_00825 -2.3 -3.4 porin compare
AO353_00495 -2.2 -2.6 DNA topoisomerase I compare
AO353_01375 -2.1 -6.5 phosphate acyltransferase compare
AO353_03585 -2.1 -3.4 ATP-dependent DNA helicase RuvA compare
AO353_03590 -2.1 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_12115 -2.1 -3.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_04355 -2.0 -2.3 homoserine dehydrogenase compare
AO353_22800 -2.0 -3.4 sulfite reductase compare
AO353_07315 -1.9 -2.8 rRNA methyltransferase compare
AO353_02640 -1.9 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_14405 -1.9 -11.2 ATPase compare
AO353_03815 -1.8 -2.7 heme utilization protein compare
AO353_16495 -1.8 -6.1 zinc metallopeptidase RseP compare
AO353_01550 -1.8 -5.6 hypothetical protein compare
AO353_14150 -1.8 -2.0 peptidylprolyl isomerase compare
AO353_15295 -1.8 -6.4 division/cell wall cluster transcriptional repressor MraZ compare
AO353_13640 -1.7 -4.5 histidine kinase compare
AO353_11165 -1.7 -9.1 hypothetical protein compare
AO353_09040 -1.7 -2.3 diaminopimelate epimerase compare
AO353_06040 -1.7 -3.5 exodeoxyribonuclease V subunit alpha compare
AO353_09890 -1.7 -5.0 phosphate ABC transporter ATP-binding protein compare
AO353_15260 -1.6 -5.7 stringent starvation protein A compare
AO353_11775 -1.6 -6.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_07355 -1.6 -5.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_14410 -1.6 -6.6 MFS transporter compare
AO353_24425 -1.5 -3.3 amino acid ABC transporter permease compare
AO353_14420 -1.5 -3.6 molecular chaperone DnaK compare
AO353_14775 -1.5 -5.3 hypothetical protein compare
AO353_05420 -1.5 -1.9 peptide chain release factor 3 compare
AO353_10705 -1.5 -3.6 tryptophan synthase subunit alpha compare
AO353_16940 -1.4 -4.5 deoxycytidine triphosphate deaminase compare
AO353_00610 -1.4 -2.6 cytochrome C oxidase Cbb3 compare
AO353_15250 -1.4 -3.2 cytochrome B compare
AO353_02250 -1.4 -3.5 chorismate synthase compare
AO353_00750 -1.4 -3.5 GntR family transcriptional regulator compare
AO353_19090 -1.3 -2.3 MarR family transcriptional regulator compare
AO353_07610 -1.3 -1.3 hypothetical protein compare
AO353_19360 -1.3 -2.5 peroxiredoxin compare
AO353_04220 -1.3 -4.4 chemotaxis protein CheY compare
AO353_20170 -1.3 -3.8 trigger factor compare
AO353_06050 -1.3 -4.8 exodeoxyribonuclease V subunit gamma compare
AO353_12105 -1.3 -5.1 peptidase S41 compare
AO353_00460 -1.2 -2.6 TetR family transcriptional regulator compare
AO353_08885 -1.2 -9.6 polyphosphate kinase compare
AO353_03630 -1.2 -8.0 porin compare
AO353_08470 -1.2 -3.1 RNA pyrophosphohydrolase compare
AO353_03580 -1.2 -2.9 ATP-dependent DNA helicase RuvB compare
AO353_03615 -1.2 -2.4 cold-shock protein compare
AO353_06045 -1.2 -5.0 exodeoxyribonuclease V subunit beta compare
AO353_15410 -1.2 -1.5 hypothetical protein compare
AO353_04565 -1.1 -4.2 nucleoid-associated protein compare
AO353_13350 -1.1 -8.1 branched-chain amino acid ABC transporter permease conserved
AO353_02520 -1.1 -2.2 sodium transporter compare
AO353_28485 -1.1 -2.9 LysR family transcriptional regulator compare
AO353_04365 -1.1 -3.7 recombinase XerD compare
AO353_19060 -1.1 -3.6 CysB family transcriptional regulator compare
AO353_24260 -1.0 -1.2 hypothetical protein compare
AO353_02005 -1.0 -1.5 hypothetical protein compare
AO353_16195 -1.0 -1.4 DNA mismatch repair protein MutT compare
AO353_27650 -1.0 -3.2 cell division protein FtsK compare
AO353_05195 -1.0 -5.7 glmZ(sRNA)-inactivating NTPase compare
AO353_20200 -1.0 -3.0 peptidylprolyl isomerase compare
AO353_05080 -1.0 -6.3 sulfate adenylyltransferase compare
AO353_02720 -1.0 -3.4 cysteine synthase compare
AO353_12240 -1.0 -3.4 histidine utilization repressor compare
AO353_18120 -0.9 -2.3 hypothetical protein compare
AO353_16375 -0.9 -1.7 hypothetical protein compare
AO353_13390 -0.9 -5.5 N-acylglucosamine 2-epimerase compare
AO353_16270 -0.9 -7.3 histidine kinase compare
AO353_13345 -0.9 -6.7 branched-chain amino acid transporter permease subunit LivH compare
AO353_23155 -0.9 -2.6 IclR family transcriptional regulator compare
AO353_13360 -0.9 -3.8 ABC transporter ATP-binding protein compare
AO353_19840 -0.9 -2.2 hypothetical protein compare
AO353_27675 -0.9 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_21630 -0.9 -2.2 precorrin-4 C11-methyltransferase compare
AO353_07515 -0.9 -1.6 transporter compare
AO353_02090 -0.9 -4.8 N-ethylammeline chlorohydrolase compare
AO353_27685 -0.9 -2.8 cold-shock protein compare
AO353_26055 -0.9 -1.6 hypothetical protein compare
AO353_06460 -0.9 -4.3 hypothetical protein compare
AO353_16290 -0.9 -5.7 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) compare
AO353_02970 -0.9 -2.3 carbon storage regulator compare
AO353_02710 -0.9 -5.4 (p)ppGpp synthetase compare
AO353_13225 -0.9 -2.3 50S ribosomal protein L9 compare
AO353_06405 -0.8 -3.3 hypothetical protein compare
AO353_12930 -0.8 -2.3 GlcNAc-PI de-N-acetylase compare
AO353_05800 -0.8 -3.0 hypothetical protein compare
AO353_08265 -0.8 -3.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_08350 -0.8 -4.4 hypothetical protein compare
AO353_20585 -0.8 -2.3 TetR family transcriptional regulator compare
AO353_12910 -0.8 -2.8 hypothetical protein compare
AO353_03365 -0.8 -4.7 transcriptional regulator compare
AO353_05075 -0.8 -5.0 adenylylsulfate kinase compare
AO353_19610 -0.8 -2.2 hypothetical protein compare
AO353_11770 -0.8 -1.4 molecular chaperone Hsp33 compare
AO353_05150 -0.8 -2.7 ABC transporter ATP-binding protein compare
AO353_08165 -0.8 -1.9 pyrroline-5-carboxylate reductase compare
AO353_03795 -0.8 -2.4 fumarate hydratase compare
AO353_05145 -0.8 -3.4 ABC transporter permease compare
AO353_08600 -0.8 -1.9 TetR family transcriptional regulator compare
AO353_04175 -0.8 -2.1 glycerol uptake facilitator GlpF compare
AO353_19295 -0.8 -1.8 hypothetical protein compare
AO353_10435 -0.8 -4.7 chromosome partitioning protein compare
AO353_13140 -0.8 -2.9 tRNA dimethylallyltransferase compare
AO353_05135 -0.8 -4.3 toluene tolerance protein compare
AO353_15905 -0.8 -3.3 outer membrane protein assembly factor BamB compare
AO353_23945 -0.8 -1.6 hypothetical protein compare
AO353_07525 -0.8 -5.7 biotin synthase compare
AO353_08895 -0.7 -3.2 hypothetical protein compare
AO353_00330 -0.7 -4.1 hypothetical protein compare
AO353_19760 -0.7 -1.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_13340 -0.7 -5.6 amino acid ABC transporter substrate-binding protein compare
AO353_12420 -0.7 -2.1 predicted FeS cluster maintenance protein (from data) compare
AO353_20840 -0.7 -1.4 ribose pyranase compare
AO353_09285 -0.7 -4.8 reactive intermediate/imine deaminase compare
AO353_05140 -0.7 -3.7 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_07465 -0.7 -1.7 addiction module toxin RelE compare
AO353_16285 -0.7 -4.0 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) compare
AO353_12880 -0.7 -1.2 ADP-heptose--LPS heptosyltransferase compare
AO353_05695 -0.7 -5.1 transcriptional regulator PdhR compare
AO353_12935 -0.7 -2.3 glycosyltransferase compare
AO353_05535 -0.7 -1.7 tRNA-Thr compare
AO353_01275 -0.7 -2.2 hypothetical protein compare
AO353_20095 -0.7 -2.8 histidine kinase compare
AO353_02270 -0.7 -2.4 isochorismatase compare
AO353_21735 -0.7 -2.6 IclR family transcriptional regulator compare
AO353_25450 -0.7 -1.4 cyanate hydratase compare
AO353_12225 -0.7 -2.2 hypothetical protein compare
AO353_16280 -0.7 -3.3 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 (from data) compare
AO353_00890 -0.7 -2.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_21440 -0.7 -1.9 hypothetical protein compare
AO353_22720 -0.7 -2.7 curli production assembly protein CsgG compare
AO353_10455 -0.7 -1.2 tRNA modification GTPase MnmE compare
AO353_02810 -0.7 -3.5 histidine kinase compare
AO353_28165 -0.7 -2.3 ABC transporter substrate-binding protein compare
AO353_01710 -0.7 -3.3 alpha/beta hydrolase compare
AO353_16835 -0.7 -0.9 LuxR family transcriptional regulator compare
AO353_19775 -0.7 -2.7 transcriptional regulator compare
AO353_15185 -0.6 -2.4 ATPase compare
AO353_08115 -0.6 -2.7 energy transducer TonB compare
AO353_20835 -0.6 -2.5 Ribokinase (EC 2.7.1.15) (from data) compare
AO353_17035 -0.6 -2.5 hypothetical protein compare
AO353_24885 -0.6 -2.5 Crp/Fnr family transcriptional regulator compare
AO353_17110 -0.6 -2.4 ABC transporter ATP-binding protein compare
AO353_17935 -0.6 -1.5 hypothetical protein compare
AO353_27410 -0.6 -1.7 hypothetical protein compare
AO353_03135 -0.6 -1.7 hypothetical protein compare
AO353_13355 -0.6 -3.2 ABC transporter ATP-binding protein compare
AO353_00905 -0.6 -2.0 GntR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Proline in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Proline across organisms