Experiment set2IT029 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Cyanocobalamin

200 most important genes:

  gene name fitness t score description  
BBR_RS11205 -7.4 -5.1 HPr family phosphocarrier protein compare
BBR_RS11210 -7.2 -8.6 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS18735 -6.5 -19.7 hypothetical protein compare
BBR_RS18695 -6.5 -8.9 PRD domain-containing protein compare
BBR_RS11015 -6.3 -7.5 aspartate kinase compare
BBR_RS17615 -6.3 -7.5 phosphoserine phosphatase SerB compare
BBR_RS12900 -6.2 -3.9 DeoR/GlpR transcriptional regulator compare
BBR_RS17990 -6.0 -12.3 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS19475 -6.0 -21.0 AEC family transporter compare
BBR_RS11025 -6.0 -16.4 aspartate-semialdehyde dehydrogenase compare
BBR_RS11020 -5.9 -12.6 ACT domain-containing protein compare
BBR_RS12235 -5.9 -1.9 hypothetical protein compare
BBR_RS18955 -5.9 -12.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS17375 -5.8 -7.0 amino acid ABC transporter ATP-binding protein compare
BBR_RS19535 -5.8 -9.8 homoserine kinase compare
BBR_RS18570 -5.8 -6.9 phosphoserine transaminase compare
BBR_RS17370 -5.7 -7.8 ABC transporter substrate-binding protein compare
BBR_RS10445 -5.6 -7.7 HlyC/CorC family transporter compare
BBR_RS13040 -5.5 -3.8 CHAP domain-containing protein compare
BBR_RS18690 -5.5 -5.4 diacylglycerol kinase compare
BBR_RS10620 -5.5 -6.5 phosphoprotein phosphatase compare
BBR_RS17365 -5.2 -6.2 ABC transporter permease compare
BBR_RS15680 -5.2 -7.2 succinate--CoA ligase subunit alpha compare
BBR_RS16970 -5.1 -6.1 phosphoglycerate dehydrogenase compare
BBR_RS16425 -5.1 -3.5 DUF3071 domain-containing protein compare
BBR_RS12545 -5.1 -6.1 DUF4012 domain-containing protein compare
BBR_RS19355 -5.0 -2.8 tRNA-Gly compare
BBR_RS17460 -4.9 -10.5 TPM domain-containing protein compare
BBR_RS18745 -4.9 -2.3 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS10660 -4.8 -23.8 esterase compare
BBR_RS15675 -4.8 -6.6 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS14070 -4.8 -3.3 threonine synthase compare
BBR_RS15070 -4.8 -3.3 endolytic transglycosylase MltG compare
BBR_RS13030 -4.8 -3.3 cell division ATP-binding protein FtsE compare
BBR_RS17290 -4.7 -11.3 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19760 -4.7 -3.0 polysaccharide ABC transporter ATPase compare
BBR_RS14215 -4.6 -5.5 peptidase compare
BBR_RS10625 -4.6 -3.5 FHA domain-containing protein compare
BBR_RS14365 -4.6 -8.8 hypothetical protein compare
BBR_RS19270 -4.6 -1.5 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS13035 -4.5 -3.1 ABC transporter permease compare
BBR_RS12460 -4.5 -5.4 LacI family DNA-binding transcriptional regulator compare
BBR_RS14210 -4.5 -4.0 hypothetical protein compare
BBR_RS16820 -4.5 -3.9 RNA polymerase sigma factor RpoE compare
BBR_RS19240 -4.5 -15.8 LacI family transcriptional regulator compare
BBR_RS11720 -4.5 -9.0 DUF2469 domain-containing protein compare
BBR_RS16750 -4.4 -3.0 ParA family protein compare
BBR_RS16155 -4.3 -11.6 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS15170 -4.3 -7.1 HlyC/CorC family transporter compare
BBR_RS16675 -4.0 -3.9 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS16430 -4.0 -3.9 nucleotide pyrophosphatase compare
BBR_RS15080 -3.9 -2.7 chorismate synthase compare
BBR_RS19740 -3.8 -19.7 DUF2142 domain-containing protein compare
BBR_RS19555 -3.7 -25.9 diaminopimelate decarboxylase compare
BBR_RS13805 -3.7 -3.1 hypothetical protein compare
BBR_RS19700 -3.6 -24.9 ATP-dependent chaperone ClpB compare
BBR_RS19450 -3.6 -2.0 GTPase ObgE compare
BBR_RS14625 -3.5 -9.6 pyrroline-5-carboxylate reductase compare
BBR_RS15085 -3.5 -2.0 3-dehydroquinate synthase compare
BBR_RS17905 -3.5 -27.1 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS16600 -3.5 -12.2 aconitate hydratase AcnA compare
BBR_RS13740 -3.4 -6.1 DUF3052 domain-containing protein compare
BBR_RS19190 -3.4 -6.9 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS14260 -3.4 -1.6 ABC transporter ATP-binding protein compare
BBR_RS13700 -3.4 -10.7 diaminopimelate epimerase compare
BBR_RS15520 -3.4 -3.3 shikimate 5-dehydrogenase compare
BBR_RS19470 -3.3 -20.6 succinyl-diaminopimelate desuccinylase compare
BBR_RS12995 -3.3 -7.0 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS19945 -3.3 -10.2 MarR family transcriptional regulator compare
BBR_RS19120 -3.3 -12.7 helicase compare
BBR_RS15180 -3.3 -10.2 long-chain fatty acid--CoA ligase compare
BBR_RS12760 -3.2 -10.6 hypothetical protein compare
BBR_RS11515 -3.1 -16.6 ammonium transporter compare
BBR_RS10755 -3.1 -8.5 adenylosuccinate synthase compare
BBR_RS16670 -3.1 -8.3 hypothetical protein compare
BBR_RS13770 -3.1 -3.6 DNA repair protein RecO compare
BBR_RS20920 -3.0 -3.9 hypothetical protein compare
BBR_RS20465 -2.9 -9.6 chromosome partitioning protein compare
BBR_RS13125 -2.9 -1.1 ABC transporter permease compare
BBR_RS14370 -2.9 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS12905 -2.7 -3.7 galactose-1-phosphate uridylyltransferase compare
BBR_RS18725 -2.7 -3.6 ribonuclease HI compare
BBR_RS14190 -2.7 -8.1 transcriptional regulator compare
BBR_RS16250 -2.7 -3.8 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS12660 -2.7 -9.4 EpsG family protein compare
BBR_RS16975 -2.6 -5.6 transcriptional repressor NrdR compare
BBR_RS19160 -2.6 -1.7 phosphate ABC transporter permease subunit PstC compare
BBR_RS17360 -2.6 -4.5 amino acid ABC transporter permease compare
BBR_RS19055 -2.6 -2.2 ferredoxin family protein compare
BBR_RS13510 -2.6 -6.3 LysR family transcriptional regulator compare
BBR_RS15355 -2.6 -3.7 DUF3800 domain-containing protein compare
BBR_RS12635 -2.6 -14.7 polysaccharide biosynthesis protein compare
BBR_RS18700 -2.6 -4.5 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS11770 -2.6 -4.7 chorismate mutase compare
BBR_RS16540 -2.6 -4.1 XRE family transcriptional regulator compare
BBR_RS11505 -2.6 -14.9 TetR/AcrR family transcriptional regulator compare
BBR_RS19375 -2.5 -2.2 acyl-CoA carboxylase subunit beta compare
BBR_RS11680 -2.5 -11.0 23S rRNA methyltransferase compare
BBR_RS11355 -2.5 -8.9 hypothetical protein compare
BBR_RS13735 -2.5 -1.4 Lon protease compare
BBR_RS16905 -2.4 -5.2 hypothetical protein compare
BBR_RS13910 -2.4 -1.8 arginine repressor compare
BBR_RS13820 -2.4 -1.9 ATP-binding protein compare
BBR_RS15090 -2.3 -1.0 type II 3-dehydroquinate dehydratase compare
BBR_RS13450 -2.3 -2.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS17510 -2.3 -8.6 VWA domain-containing protein compare
BBR_RS18050 -2.3 -2.9 threonylcarbamoyl-AMP synthase compare
BBR_RS19540 -2.3 -2.2 homoserine dehydrogenase compare
BBR_RS15860 -2.3 -1.0 DUF2316 domain-containing protein compare
BBR_RS19155 -2.2 -6.8 phosphate ABC transporter, permease protein PstA compare
BBR_RS11470 -2.2 -1.4 6-phosphogluconolactonase compare
BBR_RS19165 -2.2 -3.2 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS19645 -2.2 -9.7 RNA degradosome polyphosphate kinase compare
BBR_RS11715 -2.2 -13.7 N-acetyltransferase compare
BBR_RS18555 -2.1 -8.6 NlpC/P60 family protein compare
BBR_RS19095 -2.1 -9.1 magnesium transporter compare
BBR_RS14240 -2.1 -5.9 1,4-alpha-glucan branching protein GlgB compare
BBR_RS16255 -2.1 -2.8 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS13370 -2.1 -3.0 phosphoribosylamine--glycine ligase compare
BBR_RS14330 -2.1 -1.4 glycogen debranching enzyme GlgX compare
BBR_RS15300 -2.1 -3.7 peroxiredoxin compare
BBR_RS16150 -2.1 -6.7 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS15750 -2.0 -1.1 hypothetical protein compare
BBR_RS14655 -2.0 -5.9 AraC family transcriptional regulator compare
BBR_RS12310 -2.0 -1.7 signal recognition particle protein compare
BBR_RS17135 -2.0 -1.2 RluA family pseudouridine synthase compare
BBR_RS12640 -2.0 -10.2 glycosyl transferase compare
BBR_RS11540 -2.0 -2.8 DUF1727 domain-containing protein compare
BBR_RS16940 -2.0 -4.4 hypothetical protein compare
BBR_RS12705 -2.0 -8.8 hypothetical protein compare
BBR_RS13455 -2.0 -3.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS17505 -1.9 -9.5 VWA domain-containing protein compare
BBR_RS11500 -1.9 -8.6 glycosyltransferase family 2 protein compare
BBR_RS16965 -1.9 -1.3 ATP-dependent DNA helicase compare
BBR_RS13750 -1.9 -2.5 DivIVA domain-containing protein compare
BBR_RS19125 -1.9 -8.2 hypothetical protein compare
BBR_RS14205 -1.9 -2.6 hypothetical protein compare
BBR_RS20775 -1.9 -1.8 DUF4230 domain-containing protein compare
BBR_RS20430 -1.8 -4.5 hypothetical protein compare
BBR_RS12810 -1.8 -6.8 hypothetical protein compare
BBR_RS20450 -1.8 -11.7 murein biosynthesis integral membrane protein MurJ compare
BBR_RS14885 -1.8 -3.8 cyclomaltodextrinase compare
BBR_RS12975 -1.8 -9.4 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12980 -1.8 -9.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS20910 -1.8 -1.4 DUF1829 domain-containing protein compare
BBR_RS12630 -1.8 -10.4 glycosyltransferase family 1 protein compare
BBR_RS16955 -1.8 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS15130 -1.7 -1.7 metal-sulfur cluster assembly factor compare
BBR_RS19325 -1.7 -1.8 hypothetical protein compare
BBR_RS14280 -1.7 -2.3 dephospho-CoA kinase compare
BBR_RS15230 -1.7 -4.1 elongation factor 4 compare
BBR_RS18375 -1.7 -8.5 ATP-dependent helicase compare
BBR_RS14265 -1.7 -3.8 Solute-binding protein of ABC transporter system for metals compare
BBR_RS18215 -1.7 -5.6 AI-2E family transporter compare
BBR_RS17860 -1.7 -10.7 ABC transporter ATP-binding protein compare
BBR_RS17500 -1.7 -6.9 hypothetical protein compare
BBR_RS14665 -1.7 -6.0 MATE family efflux transporter compare
BBR_RS17495 -1.7 -7.7 DUF58 domain-containing protein compare
BBR_RS17880 -1.7 -3.2 nucleotidyltransferase compare
BBR_RS15650 -1.6 -1.7 Holliday junction resolvase compare
BBR_RS12175 -1.6 -6.0 TetR/AcrR family transcriptional regulator compare
BBR_RS14700 -1.6 -2.1 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS19050 -1.6 -11.7 succinyldiaminopimelate transaminase compare
BBR_RS20455 -1.6 -6.8 thioredoxin-disulfide reductase compare
BBR_RS18755 -1.6 -1.3 30S ribosome-binding factor RbfA compare
BBR_RS19445 -1.6 -12.5 glutamate 5-kinase compare
BBR_RS14075 -1.6 -4.2 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS12645 -1.5 -5.1 acyltransferase compare
BBR_RS10905 -1.5 -2.6 nucleotide exchange factor GrpE compare
BBR_RS16610 -1.5 -3.1 hypothetical protein compare
BBR_RS17855 -1.5 -9.9 ABC transporter ATP-binding protein compare
BBR_RS17515 -1.5 -5.2 hypothetical protein compare
BBR_RS12665 -1.5 -8.6 acyltransferase compare
BBR_RS10900 -1.5 -1.0 molecular chaperone DnaK compare
BBR_RS17720 -1.5 -7.8 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS13300 -1.5 -1.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS20420 -1.5 -6.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS17455 -1.5 -7.0 DNA-binding response regulator compare
BBR_RS10910 -1.5 -8.1 molecular chaperone DnaJ compare
BBR_RS19680 -1.5 -7.9 uracil phosphoribosyltransferase compare
BBR_RS13420 -1.5 -1.5 DUF4230 domain-containing protein compare
BBR_RS15805 -1.4 -4.3 prolipoprotein diacylglyceryl transferase compare
BBR_RS18550 -1.4 -5.9 universal stress protein compare
BBR_RS13405 -1.4 -3.1 hypothetical protein compare
BBR_RS17490 -1.4 -7.6 MoxR family ATPase compare
BBR_RS10615 -1.4 -3.2 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS20460 -1.4 -3.4 chromosome partitioning protein ParB compare
BBR_RS12755 -1.4 -9.1 DUF4365 domain-containing protein compare
BBR_RS13830 -1.4 -0.8 DUF4191 domain-containing protein compare
BBR_RS10740 -1.4 -1.2 tRNA-Gly compare
BBR_RS15845 -1.4 -0.8 hypothetical protein compare
BBR_RS15335 -1.4 -3.0 hypothetical protein compare
BBR_RS14230 -1.4 -4.4 HAMP domain-containing histidine kinase compare
BBR_RS15505 -1.3 -5.3 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS17865 -1.3 -3.4 MarR family transcriptional regulator compare
BBR_RS17715 -1.3 -5.0 type I-C CRISPR-associated protein Cas5 compare
BBR_RS12700 -1.3 -5.7 hypothetical protein compare
BBR_RS13945 -1.3 -1.5 Txe/YoeB family addiction module toxin compare
BBR_RS13545 -1.3 -2.9 DUF4143 domain-containing protein compare
BBR_RS20935 -1.2 -2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout experiments

For nutrient dropout no Cyanocobalamin across organisms