Experiment set2IT028 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Alanine carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_5405 -4.8 -5.7 ABC transporter for D-Alanine, ATPase component (from data) compare
Pf6N2E2_5459 -4.4 -13.1 D-serine/D-alanine/glycine transporter conserved
Pf6N2E2_5403 -3.7 -11.7 ABC transporter for D-Alanine, permease component 2 (from data) compare
Pf6N2E2_4390 -3.2 -9.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system conserved
Pf6N2E2_5402 -3.1 -8.2 ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) compare
Pf6N2E2_5404 -3.1 -9.2 ABC transporter for D-Alanine, permease component 1 (from data) compare
Pf6N2E2_3613 -1.9 -7.2 GTP-binding protein HflX conserved
Pf6N2E2_2926 -1.7 -6.5 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 2 LivF (from data) conserved
Pf6N2E2_65 -1.6 -5.4 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_2923 -1.6 -8.3 ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) conserved
Pf6N2E2_2924 -1.4 -8.0 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, permease component 2 LivM (from data) conserved
Pf6N2E2_4388 -1.4 -7.3 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_5401 -1.4 -6.6 phospholipase/carboxylesterase family protein compare
Pf6N2E2_3576 -1.2 -6.6 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) conserved
Pf6N2E2_2764 -1.2 -7.1 Tricarboxylate transport sensor protein TctE compare
Pf6N2E2_3577 -1.1 -6.7 ABC transporter for L-leucine/L-isoleucine/D-alanine, ATPase component 1 LivG (from data) conserved
Pf6N2E2_2684 +1.1 7.6 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
Pf6N2E2_4632 +1.1 9.0 Amine oxidase [flavin-containing] (EC 1.4.3.4) compare
Pf6N2E2_694 +1.2 7.1 Outer membrane protein (porin) compare
Pf6N2E2_3334 +1.2 10.0 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_4775 +1.2 6.0 Coenzyme PQQ synthesis protein B compare
Pf6N2E2_3903 +1.3 7.7 Ribosomal protein S6 glutaminyl transferase compare
Pf6N2E2_2533 +1.3 9.2 Rhodanese domain protein UPF0176 compare
Pf6N2E2_1394 +1.3 5.0 FIG00953323: hypothetical protein compare
Pf6N2E2_4437 +1.5 6.4 Twin-arginine translocation protein TatB compare
Pf6N2E2_424 +1.7 10.2 Decarboxylase family protein compare
Pf6N2E2_1382 +1.7 11.6 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_4772 +1.8 10.2 Coenzyme PQQ synthesis protein E compare
Pf6N2E2_4774 +1.8 11.3 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
Pf6N2E2_2389 +2.4 17.5 Phosphoenolpyruvate synthase (EC 2.7.9.2) conserved
Pf6N2E2_5365 +2.4 11.9 Heavy metal sensor histidine kinase compare
Pf6N2E2_1386 +2.5 13.0 amino acid ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_4813 +2.6 16.4 Probable two-component sensor, near polyamine transporter compare


Specific phenotypes for carbon source D-Alanine across organisms