Experiment set2IT028 for Acidovorax sp. GW101-3H11
LB with Cisplatin 0.0025 mg/ml
Group: stressMedia: LB + Cisplatin (0.0025 mg/ml)
Culturing: acidovorax_3H11_ML3a, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 5/11/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 4 genes in this experiment
For stress Cisplatin in Acidovorax sp. GW101-3H11
For stress Cisplatin across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA-replication | 1 |
| NAD and NADP cofactor biosynthesis global | 1 |
| NAD regulation | 1 |
| Protein chaperones | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Nicotinate and nicotinamide metabolism
- Purine metabolism
- Pyrimidine metabolism
- Glutamate metabolism
- Nitrogen metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| NAD salvage pathway II (PNC IV cycle) | 5 | 4 | 2 |
| NAD de novo biosynthesis I | 6 | 5 | 2 |
| NAD de novo biosynthesis IV (anaerobic) | 6 | 4 | 2 |
| NAD de novo biosynthesis III | 6 | 4 | 2 |
| NAD salvage pathway I (PNC VI cycle) | 7 | 5 | 2 |
| NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde | 4 | 3 | 1 |
| NAD salvage pathway V (PNC V cycle) | 5 | 3 | 1 |
| NAD de novo biosynthesis II (from tryptophan) | 9 | 6 | 1 |
| NAD salvage (plants) | 11 | 5 | 1 |
| aspartate superpathway | 25 | 22 | 2 |
| superpathway of NAD biosynthesis in eukaryotes | 14 | 9 | 1 |