Experiment set2IT028 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Fusidic acid sodium salt 0.001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS24195 +5.7 7.3 TetR family transcriptional regulator compare
CA265_RS03740 +4.8 14.1 hypothetical protein compare
CA265_RS24200 +3.1 2.8 fatty acid hydroxylase compare
CA265_RS21745 +3.1 12.4 hypothetical protein compare
CA265_RS10980 +2.9 5.8 histidine kinase compare
CA265_RS21330 +2.3 4.3 TetR family transcriptional regulator compare
CA265_RS12765 +1.9 13.5 SRPBCC family protein compare
CA265_RS04700 +1.8 5.7 hypothetical protein compare
CA265_RS15245 +1.5 6.2 ABC transporter ATP-binding protein compare
CA265_RS23155 +1.4 8.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS24205 +1.4 3.0 hypothetical protein compare
CA265_RS20350 +1.3 6.4 gliding motility lipoprotein GldH compare
CA265_RS06285 +1.3 6.0 YggS family pyridoxal phosphate enzyme compare
CA265_RS19380 +1.2 8.0 beta-carotene 15,15'-monooxygenase compare
CA265_RS18140 +1.2 7.7 DUF4271 domain-containing protein compare
CA265_RS02765 +1.2 3.0 cell division protein ZapA compare
CA265_RS13195 +1.1 2.7 SAM-dependent methyltransferase compare
CA265_RS15250 +1.1 7.4 ABC transporter permease compare
CA265_RS03735 +1.1 3.5 hypothetical protein compare
CA265_RS22010 +1.1 2.6 hypothetical protein compare
CA265_RS17145 +1.0 3.8 malate:quinone oxidoreductase compare
CA265_RS18190 +1.0 6.7 cupin compare
CA265_RS18780 +0.9 4.3 YicC family protein compare
CA265_RS10995 +0.9 2.6 hypothetical protein compare
CA265_RS09140 +0.9 3.0 MerR family transcriptional regulator compare
CA265_RS04695 +0.9 2.3 hypothetical protein compare
CA265_RS21060 +0.9 3.6 hypothetical protein compare
CA265_RS25235 +0.8 5.4 hypothetical protein compare
CA265_RS15200 +0.8 3.2 hypothetical protein compare
CA265_RS20650 +0.8 0.9 hypothetical protein compare
CA265_RS07230 +0.8 1.8 hypothetical protein compare
CA265_RS17025 +0.8 2.3 hypothetical protein compare
CA265_RS05985 +0.8 1.5 hypothetical protein compare
CA265_RS17455 +0.8 2.5 hypothetical protein compare
CA265_RS00025 +0.8 2.8 hypothetical protein compare
CA265_RS10595 +0.7 4.5 dicarboxylate/amino acid:cation symporter compare
CA265_RS19030 +0.7 4.9 hypothetical protein compare
CA265_RS04560 +0.7 2.1 hypothetical protein compare
CA265_RS10000 +0.7 1.6 nitrite reductase small subunit compare
CA265_RS07515 +0.7 4.4 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS16515 +0.7 1.4 hypothetical protein compare
CA265_RS02760 +0.7 1.8 hypothetical protein compare
CA265_RS09020 +0.7 2.5 hypothetical protein compare
CA265_RS13985 +0.6 1.7 hypothetical protein compare
CA265_RS07535 +0.6 2.4 ATPase compare
CA265_RS03765 +0.6 3.5 hypothetical protein compare
CA265_RS09270 +0.6 0.6 hypothetical protein compare
CA265_RS08880 +0.6 4.3 chromate transporter compare
CA265_RS20890 +0.6 0.7 MRP family ATP-binding protein compare
CA265_RS05260 +0.6 2.1 hypothetical protein compare
CA265_RS06405 +0.6 1.6 hypothetical protein compare
CA265_RS09650 +0.6 1.5 diaminopimelate decarboxylase compare
CA265_RS18485 +0.6 3.0 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS20355 +0.6 2.4 hypothetical protein compare
CA265_RS18115 +0.6 4.1 gliding motility protein GldN compare
CA265_RS23895 +0.6 2.7 preprotein translocase compare
CA265_RS04040 +0.6 1.8 hypothetical protein compare
CA265_RS22350 +0.6 3.5 diacylglycerol kinase compare
CA265_RS25095 +0.5 4.0 MBL fold metallo-hydrolase compare
CA265_RS16005 +0.5 2.9 hypothetical protein compare
CA265_RS07755 +0.5 1.3 hypothetical protein compare
CA265_RS15920 +0.5 1.9 hypothetical protein compare
CA265_RS08770 +0.5 1.9 hypothetical protein compare
CA265_RS07390 +0.5 2.2 hypothetical protein compare
CA265_RS14260 +0.5 1.4 restriction endonuclease subunit R compare
CA265_RS18270 +0.5 1.7 hypothetical protein compare
CA265_RS14015 +0.5 1.1 transcriptional regulator compare
CA265_RS04445 +0.5 1.6 hypothetical protein compare
CA265_RS22650 +0.5 2.7 branched chain amino acid aminotransferase compare
CA265_RS13835 +0.5 2.1 hypothetical protein compare
CA265_RS20285 +0.5 2.5 hypothetical protein compare
CA265_RS23515 +0.5 2.2 hypothetical protein compare
CA265_RS01785 +0.5 2.6 hypothetical protein compare
CA265_RS12720 +0.5 2.0 hypothetical protein compare
CA265_RS02795 +0.5 0.7 hypothetical protein compare
CA265_RS12595 +0.5 2.3 RNA polymerase subunit sigma-24 compare
CA265_RS08090 +0.5 2.3 serine/threonine protein kinase compare
CA265_RS23145 +0.5 2.6 hypothetical protein compare
CA265_RS10600 +0.5 1.7 RNA polymerase subunit sigma-24 compare
CA265_RS12780 +0.5 0.9 hypothetical protein compare
CA265_RS08570 +0.5 0.8 dehydratase compare
CA265_RS23045 +0.5 1.3 cold-shock protein compare
CA265_RS18120 +0.5 3.4 gliding motility protein GldM compare
CA265_RS08965 +0.5 2.7 thioesterase compare
CA265_RS08660 +0.5 1.0 glyoxalase compare
CA265_RS04450 +0.5 2.3 hypothetical protein compare
CA265_RS00265 +0.5 2.0 RNA polymerase sigma-70 factor compare
CA265_RS00465 +0.5 1.5 cupin compare
CA265_RS19280 +0.5 1.4 hypothetical protein compare
CA265_RS12600 +0.5 0.9 hypothetical protein compare
CA265_RS20270 +0.5 1.6 methionine--tRNA ligase compare
CA265_RS18125 +0.5 2.3 gliding motility protein GldL compare
CA265_RS24770 +0.5 1.6 hypothetical protein compare
CA265_RS15580 +0.5 2.5 tRNA pseudouridine(38-40) synthase TruA compare
CA265_RS03645 +0.4 3.6 L,D-transpeptidase compare
CA265_RS06175 +0.4 0.9 hypothetical protein compare
CA265_RS00130 +0.4 3.1 glycosyltransferase compare
CA265_RS11605 +0.4 2.6 Proline dehydrogenase (EC 1.5.5.2) (from data) compare
CA265_RS21325 +0.4 3.0 cellulase compare
CA265_RS06505 +0.4 1.9 hypothetical protein compare
CA265_RS22885 +0.4 2.5 cytochrome B compare
CA265_RS18495 +0.4 0.9 hypothetical protein compare
CA265_RS01795 +0.4 3.1 ABC transporter compare
CA265_RS06250 +0.4 1.1 RNA polymerase subunit sigma-70 compare
CA265_RS23460 +0.4 1.2 hypothetical protein compare
CA265_RS23120 +0.4 1.3 hypothetical protein compare
CA265_RS06255 +0.4 1.4 serine protease compare
CA265_RS20010 +0.4 1.5 methylmalonyl-CoA mutase compare
CA265_RS06595 +0.4 0.7 Arc family DNA binding domain-containing protein compare
CA265_RS18990 +0.4 3.9 cell surface protein SprA compare
CA265_RS22635 +0.4 0.9 phosphoserine phosphatase (EC 3.1.3.3) (from data) compare
CA265_RS16130 +0.4 1.5 cell division protein FtsX compare
CA265_RS18790 +0.4 2.1 four helix bundle protein compare
CA265_RS20645 +0.4 2.5 RNA polymerase subunit sigma-70 compare
CA265_RS24835 +0.4 2.6 hypothetical protein compare
CA265_RS11480 +0.4 1.4 VOC family protein compare
CA265_RS19735 +0.4 1.5 MBL fold hydrolase compare
CA265_RS24280 +0.4 1.6 cupin compare
CA265_RS02245 +0.4 2.6 hypothetical protein compare
CA265_RS10480 +0.4 1.4 hypothetical protein compare
CA265_RS06430 +0.4 1.4 hypothetical protein compare
CA265_RS15725 +0.4 2.0 hypothetical protein compare
CA265_RS05890 +0.4 2.2 PA-phosphatase compare
CA265_RS18455 +0.4 1.7 nucleotidyltransferase compare
CA265_RS04275 +0.4 2.8 ATP-dependent protease ATP-binding subunit ClpX compare
CA265_RS23195 +0.4 2.3 HIT family protein compare
CA265_RS19265 +0.4 1.0 imidazole glycerol phosphate synthase subunit HisH compare
CA265_RS12675 +0.4 1.9 hypothetical protein compare
CA265_RS04375 +0.4 2.2 cystathionine beta-synthase compare
CA265_RS18080 +0.4 2.7 hypothetical protein compare
CA265_RS06610 +0.4 3.1 transmembrane HD family protein compare
CA265_RS14640 +0.4 0.7 UDP-glucose 4-epimerase compare
CA265_RS14145 +0.4 1.6 hypothetical protein compare
CA265_RS18130 +0.4 3.0 gliding motility-associated lipoprotein compare
CA265_RS05990 +0.4 2.3 hypothetical protein compare
CA265_RS02930 +0.4 1.9 beta-glucanase compare
CA265_RS21480 +0.4 1.9 GNAT family N-acetyltransferase compare
CA265_RS06010 +0.4 1.2 hypothetical protein compare
CA265_RS24505 +0.4 1.6 short-chain dehydrogenase/reductase compare
CA265_RS24055 +0.4 2.0 GNAT family N-acetyltransferase compare
CA265_RS13735 +0.4 1.7 AsnC family transcriptional regulator compare
CA265_RS15280 +0.4 2.6 glycine C-acetyltransferase compare
CA265_RS06535 +0.4 1.8 hypothetical protein compare
CA265_RS12945 +0.4 2.4 hypothetical protein compare
CA265_RS21750 +0.4 1.8 hypothetical protein compare
CA265_RS14415 +0.4 2.7 pseudouridine synthase compare
CA265_RS11750 +0.4 1.6 hypothetical protein compare
CA265_RS01770 +0.4 1.4 hypothetical protein compare
CA265_RS15550 +0.4 1.4 hypothetical protein compare
CA265_RS10615 +0.4 1.1 diacylglycerol kinase compare
CA265_RS19740 +0.4 1.6 gliding motility lipoprotein GldD compare
CA265_RS19845 +0.4 2.3 GntR family transcriptional regulator compare
CA265_RS09955 +0.4 1.4 response regulator compare
CA265_RS20280 +0.4 2.0 DoxX family protein compare
CA265_RS01950 +0.4 1.4 hypothetical protein compare
CA265_RS01755 +0.4 2.7 hypothetical protein compare
CA265_RS20675 +0.4 2.0 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
CA265_RS03450 +0.4 1.2 hypothetical protein compare
CA265_RS00125 +0.4 2.1 polysaccharide deacetylase compare
CA265_RS05915 +0.4 1.9 hypothetical protein compare
CA265_RS19500 +0.4 2.0 methyltransferase type 11 compare
CA265_RS13170 +0.4 1.0 hypothetical protein compare
CA265_RS21605 +0.4 1.8 sensor histidine kinase compare
CA265_RS12330 +0.4 0.7 response regulator compare
CA265_RS18660 +0.4 2.1 SAM-dependent methyltransferase compare
CA265_RS11055 +0.3 1.8 hypothetical protein compare
CA265_RS14165 +0.3 2.1 hypothetical protein compare
CA265_RS03260 +0.3 2.3 multidrug ABC transporter ATP-binding protein compare
CA265_RS24255 +0.3 1.2 sugar kinase compare
CA265_RS00135 +0.3 2.4 hypothetical protein compare
CA265_RS23640 +0.3 2.7 hypothetical protein compare
CA265_RS12115 +0.3 2.1 sialate O-acetylesterase compare
CA265_RS03210 +0.3 1.7 hypothetical protein compare
CA265_RS14110 +0.3 1.7 ATP-binding protein compare
CA265_RS04100 +0.3 1.2 uroporphyrinogen-III C-methyltransferase compare
CA265_RS14170 +0.3 1.4 DNA repair protein compare
CA265_RS03265 +0.3 1.5 hypothetical protein compare
CA265_RS04780 +0.3 1.3 polyketide cyclase compare
CA265_RS21450 +0.3 1.9 imidazolonepropionase compare
CA265_RS03295 +0.3 2.5 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS17375 +0.3 1.1 hypothetical protein compare
CA265_RS14345 +0.3 1.7 hypothetical protein compare
CA265_RS07595 +0.3 1.7 MerR family transcriptional regulator compare
CA265_RS03290 +0.3 1.9 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS01385 +0.3 1.8 cytochrome C compare
CA265_RS23510 +0.3 1.6 energy transducer TonB compare
CA265_RS20725 +0.3 1.5 hypothetical protein compare
CA265_RS01220 +0.3 1.3 hypothetical protein compare
CA265_RS03540 +0.3 2.0 hypothetical protein compare
CA265_RS21130 +0.3 2.2 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS21905 +0.3 1.6 hypothetical protein compare
CA265_RS18805 +0.3 0.7 hypothetical protein compare
CA265_RS05495 +0.3 1.5 hypothetical protein compare
CA265_RS22600 +0.3 2.1 hypothetical protein compare
CA265_RS23525 +0.3 2.5 hypothetical protein compare
CA265_RS08560 +0.3 1.7 ABC transporter substrate-binding protein compare
CA265_RS01725 +0.3 2.2 hypothetical protein compare
CA265_RS10365 +0.3 2.2 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS17330 +0.3 1.0 hypothetical protein compare
CA265_RS20315 +0.3 2.7 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Fusidic acid sodium salt in Pedobacter sp. GW460-11-11-14-LB5

For stress Fusidic acid sodium salt across organisms