Experiment set2IT028 for Shewanella loihica PV-4

Compare to:

LB with Thallium(I) acetate 10 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Shew_3097 +4.4 28.6 TonB-dependent siderophore receptor (RefSeq) compare
Shew_3841 +3.0 5.8 TonB-dependent siderophore receptor (RefSeq) compare
Shew_3658 +2.9 16.8 hypothetical protein (RefSeq) compare
Shew_1797 +2.6 3.5 paraquat-inducible protein A (RefSeq) compare
Shew_0127 +2.5 5.1 LexA repressor (RefSeq) compare
Shew_1851 +2.5 1.8 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_1186 +2.3 4.9 transcriptional regulator NrdR (RefSeq) compare
Shew_1852 +2.1 6.7 acriflavin resistance protein (RefSeq) compare
Shew_1798 +2.1 6.1 paraquat-inducible protein A (RefSeq) compare
Shew_1796 +2.1 9.7 hypothetical protein (RefSeq) compare
Shew_1458 +2.1 10.0 serine/threonine transporter SstT (RefSeq) compare
Shew_0468 +2.1 10.5 LysR family transcriptional regulator (RefSeq) compare
Shew_2052 +1.9 5.2 TetR family transcriptional regulator (RefSeq) compare
Shew_3805 +1.9 3.3 rhodanese domain-containing protein (RefSeq) compare
Shew_0462 +1.7 1.5 hypothetical protein (RefSeq) compare
Shew_2481 +1.7 6.3 porin (RefSeq) compare
Shew_0939 +1.6 9.2 leucyl aminopeptidase (RefSeq) compare
Shew_1673 fabG +1.6 1.5 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Shew_3570 +1.6 4.3 two component transcriptional regulator (RefSeq) compare
Shew_2349 +1.6 5.1 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_2569 +1.5 4.4 MerR family transcriptional regulator (RefSeq) compare
Shew_0950 +1.5 4.5 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_3311 +1.5 6.7 RNA polymerase factor sigma-54 (RefSeq) compare
Shew_2950 +1.4 1.8 RluA family pseudouridine synthase (RefSeq) compare
Shew_2061 +1.4 1.6 radical SAM domain-containing protein (RefSeq) compare
Shew_3571 +1.3 7.8 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1995 +1.3 1.6 PP-loop domain-containing protein (RefSeq) compare
Shew_1889 +1.3 8.5 alpha amylase, catalytic region (RefSeq) compare
Shew_2892 +1.3 3.9 major facilitator transporter (RefSeq) compare
Shew_2184 +1.3 2.2 septum site-determining protein MinC (RefSeq) compare
Shew_1278 +1.3 0.8 hypothetical protein (RefSeq) compare
Shew_3638 envZ +1.3 10.8 osmolarity sensor protein (RefSeq) compare
Shew_3560 +1.3 5.2 signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) compare
Shew_2785 +1.3 1.0 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_3637 ompR +1.3 5.0 osmolarity response regulator (RefSeq) compare
Shew_2327 +1.2 0.7 hypothetical protein (RefSeq) compare
Shew_1092 +1.2 3.3 amino acid carrier protein (RefSeq) compare
Shew_1050 +1.2 2.7 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_2458 +1.2 0.9 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_0895 +1.2 6.4 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0301 +1.2 1.2 AsnC family transcriptional regulator (RefSeq) compare
Shew_0407 +1.2 5.2 ribonuclease G (RefSeq) compare
Shew_0467 +1.2 3.2 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_0322 +1.2 4.0 diaminopimelate decarboxylase (RefSeq) compare
Shew_3683 +1.2 3.2 extracellular solute-binding protein (RefSeq) compare
Shew_3657 +1.1 5.6 oligopeptidase A (RefSeq) compare
Shew_3537 +1.1 1.7 hypothetical protein (RefSeq) compare
Shew_2544 +1.1 1.8 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_0396 +1.1 1.6 methylation site containing protein (RefSeq) compare
Shew_3718 +1.1 1.3 hypothetical protein (RefSeq) compare
Shew_1732 +1.1 2.5 hypothetical protein (RefSeq) compare
Shew_0343 +1.1 1.2 hypothetical protein (RefSeq) compare
Shew_1781 +1.1 1.7 hypothetical protein (RefSeq) compare
Shew_1397 +1.1 2.8 amino acid/peptide transporter (RefSeq) compare
Shew_2153 +1.1 1.1 LysR family transcriptional regulator (RefSeq) compare
Shew_3247 +1.0 0.9 hypothetical protein (RefSeq) compare
Shew_3512 +1.0 3.8 acyl carrier protein (RefSeq) compare
Shew_3295 +1.0 6.6 AFG1 family ATPase (RefSeq) compare
Shew_3561 +1.0 4.9 nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) compare
Shew_3271 +1.0 5.8 galactokinase (RefSeq) compare
Shew_1861 +1.0 4.4 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin (RefSeq) compare
Shew_0057 +1.0 2.8 cytoplasmic chaperone TorD family protein (RefSeq) compare
Shew_2237 +1.0 1.5 hypothetical protein (RefSeq) compare
Shew_1059 +1.0 1.6 hypothetical protein (RefSeq) compare
Shew_1731 +1.0 0.6 histidine triad (HIT) protein (RefSeq) compare
Shew_1514 upp +1.0 2.4 uracil phosphoribosyltransferase (RefSeq) compare
Shew_2188 +1.0 4.4 long-chain-fatty-acid--CoA ligase (RefSeq) compare
Shew_1660 +1.0 0.9 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0866 +0.9 1.2 arginine repressor (RefSeq) compare
Shew_3853 +0.9 5.6 parB-like partition protein (RefSeq) compare
Shew_0450 +0.9 4.4 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_2959 +0.9 1.8 LysR family transcriptional regulator (RefSeq) compare
Shew_2919 +0.9 1.0 translation-associated GTPase (RefSeq) compare
Shew_1510 +0.9 1.3 peptidase M28 (RefSeq) compare
Shew_1398 +0.9 1.7 NusG antitermination factor (RefSeq) compare
Shew_3515 +0.9 2.9 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_0218 +0.9 3.6 hypothetical protein (RefSeq) compare
Shew_2514 +0.8 1.3 tRNA--hydroxylase (RefSeq) compare
Shew_1769 +0.8 1.0 NapD family protein (RefSeq) compare
Shew_3689 +0.8 1.6 hypothetical protein (RefSeq) compare
Shew_0932 +0.8 1.0 radical SAM domain-containing protein (RefSeq) compare
Shew_2191 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_2407 +0.8 2.6 putative periplasmic protease (RefSeq) compare
Shew_2386 +0.8 3.0 hypothetical protein (RefSeq) compare
Shew_3772 +0.8 1.0 thioesterase superfamily protein (RefSeq) compare
Shew_2483 dinG +0.8 4.9 ATP-dependent DNA helicase DinG (RefSeq) compare
Shew_2337 tgt +0.8 3.1 queuine tRNA-ribosyltransferase (RefSeq) compare
Shew_2403 +0.8 0.9 arylesterase (RefSeq) compare
Shew_0695 +0.8 1.0 hypothetical protein (RefSeq) compare
Shew_2228 +0.8 4.1 inosine kinase (RefSeq) compare
Shew_0108 +0.8 5.5 polysaccharide deacetylase (RefSeq) compare
Shew_2740 +0.8 0.6 YfaZ family protein (RefSeq) compare
Shew_1686 +0.8 1.4 hypothetical protein (RefSeq) compare
Shew_3685 +0.8 3.2 ABC transporter-related protein (RefSeq) compare
Shew_0121 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_2434 +0.8 1.7 hypothetical protein (RefSeq) compare
Shew_1411 +0.8 5.5 hexapaptide repeat-containing transferase (RefSeq) compare
Shew_1782 +0.8 3.9 MarR family transcriptional regulator (RefSeq) compare
Shew_2406 +0.8 0.9 AraC family transcriptional regulator (RefSeq) compare
Shew_2923 +0.8 4.3 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) compare
Shew_2241 +0.8 1.0 hypothetical protein (RefSeq) compare
Shew_1832 +0.8 1.8 hypothetical protein (RefSeq) compare
Shew_1679 +0.8 0.5 TetR family transcriptional regulator (RefSeq) compare
Shew_1287 +0.8 1.3 hypothetical protein (RefSeq) compare
Shew_2350 +0.8 0.9 2OG-Fe(II) oxygenase (RefSeq) compare
Shew_3525 fabG +0.7 2.6 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Shew_0434 +0.7 1.7 hypothetical protein (RefSeq) compare
Shew_3080 +0.7 1.8 thiol:disulfide interchange protein, putative (RefSeq) compare
Shew_3442 +0.7 0.9 hypothetical protein (RefSeq) compare
Shew_3385 uvrD +0.7 4.1 DNA-dependent helicase II (RefSeq) compare
Shew_1173 +0.7 1.9 hypothetical protein (RefSeq) compare
Shew_0484 +0.7 2.3 hypothetical protein (RefSeq) compare
Shew_0516 +0.7 1.8 cytochrome c family protein (RefSeq) compare
Shew_1668 +0.7 3.9 methylmalonate-semialdehyde dehydrogenase (RefSeq) compare
Shew_0388 +0.7 2.5 MSHA biogenesis protein MshK (RefSeq) compare
Shew_2140 +0.7 1.4 hypothetical protein (RefSeq) compare
Shew_0102 +0.7 1.2 hypothetical protein (RefSeq) compare
Shew_0676 +0.7 2.2 putative lipoprotein (RefSeq) compare
Shew_2900 +0.7 2.5 hypothetical protein (RefSeq) compare
Shew_3526 +0.7 4.9 3-oxoacyl-(acyl carrier protein) synthase II (RefSeq) compare
Shew_3388 +0.7 0.4 hypothetical protein (RefSeq) compare
Shew_2249 +0.7 1.3 Sua5/YciO/YrdC/YwlC family protein (RefSeq) compare
Shew_2213 +0.7 1.6 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (RefSeq) compare
Shew_3473 +0.7 4.7 response regulator receiver protein (RefSeq) compare
Shew_1052 +0.7 2.9 GTP-binding protein LepA (RefSeq) compare
Shew_2607 +0.7 2.1 putative branched-chain amino acid ABC transporter (RefSeq) compare
Shew_1557 +0.7 2.1 cupin 4 family protein (RefSeq) compare
Shew_3135 +0.7 3.0 L-lactate permease (RefSeq) compare
Shew_3522 +0.7 0.7 hypothetical protein (RefSeq) compare
Shew_3524 +0.7 2.1 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_2790 +0.7 1.0 nucleoside recognition domain-containing protein (RefSeq) compare
Shew_2884 +0.7 1.1 glycine cleavage system regulatory protein-like protein (RefSeq) compare
Shew_1929 +0.7 2.5 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_0802 +0.7 1.8 chromate transporter (RefSeq) compare
Shew_2654 queF +0.7 1.8 7-cyano-7-deazaguanine reductase (RefSeq) compare
Shew_2573 +0.7 3.7 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_0896 +0.7 2.9 two component transcriptional regulator (RefSeq) compare
Shew_0390 +0.7 0.6 MSHA biogenesis protein MshM (RefSeq) compare
Shew_1405 +0.7 5.2 glycosyl transferase, group 1 (RefSeq) compare
Shew_0412 +0.7 2.1 secretion protein HlyD family protein (RefSeq) compare
Shew_3222 +0.7 2.1 protein of unknown function DUF335, SprT (RefSeq) compare
Shew_2536 +0.7 1.4 putative thiol-disulphide oxidoreductase DCC (RefSeq) compare
Shew_0578 argD +0.7 1.8 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) compare
Shew_1962 +0.7 1.0 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) compare
Shew_3684 +0.7 3.8 binding-protein-dependent transport systems inner membrane component (RefSeq) compare
Shew_1110 +0.7 1.1 nitrogen regulatory protein P-II (RefSeq) compare
Shew_0416 +0.7 4.0 peptidase U62, modulator of DNA gyrase (RefSeq) compare
Shew_2768 +0.7 1.1 flagellar motor protein PomA (RefSeq) compare
Shew_1670 +0.6 2.0 enoyl-CoA hydratase (RefSeq) compare
Shew_0852 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_0973 +0.6 2.1 extracellular solute-binding protein (RefSeq) compare
Shew_2775 +0.6 1.8 MATE efflux family protein (RefSeq) compare
Shew_2644 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_3095 +0.6 2.3 hypothetical protein (RefSeq) compare
Shew_0778 +0.6 2.4 hypothetical protein (RefSeq) compare
Shew_1407 +0.6 4.1 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_2553 +0.6 0.9 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1432 +0.6 0.7 ferredoxin-type protein NapF (RefSeq) compare
Shew_0406 +0.6 2.2 maf protein (RefSeq) compare
Shew_3622 hslO +0.6 2.6 Hsp33-like chaperonin (RefSeq) compare
Shew_0234 +0.6 2.5 hypothetical protein (RefSeq) compare
Shew_1683 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_3262 +0.6 0.5 hypothetical protein (RefSeq) compare
Shew_1776 +0.6 2.3 acetolactate synthase 3 catalytic subunit (RefSeq) compare
Shew_3434 +0.6 3.6 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) compare
Shew_3600 +0.6 2.2 alpha/beta hydrolase fold (RefSeq) compare
Shew_2598 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_3673 +0.6 2.5 hypothetical protein (RefSeq) compare
Shew_1483 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_3509 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_2106 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_1564 +0.6 1.1 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Shew_3854 +0.6 3.3 cobyrinic acid a,c-diamide synthase (RefSeq) compare
Shew_0788 +0.6 1.2 dienelactone hydrolase (RefSeq) compare
Shew_3321 +0.6 2.0 hypothetical protein (RefSeq) compare
Shew_0759 +0.6 1.8 cytochrome c, putative (RefSeq) compare
Shew_1356 +0.6 1.8 flagellin domain-containing protein (RefSeq) compare
Shew_0805 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_0565 +0.6 0.6 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) compare
Shew_2176 +0.6 0.6 disulphide bond formation protein DsbB (RefSeq) compare
Shew_2280 +0.6 2.1 phenylalanine/histidine ammonia-lyase (RefSeq) compare
Shew_1675 +0.6 3.1 peptidase S9 prolyl oligopeptidase (RefSeq) compare
Shew_2043 +0.6 0.9 cation diffusion facilitator family transporter (RefSeq) compare
Shew_1473 +0.6 1.7 hypothetical protein (RefSeq) compare
Shew_2287 +0.6 1.1 galactokinase (RefSeq) compare
Shew_0992 +0.6 1.2 BsuBIPstI restriction endonuclease domain-containing protein (RefSeq) compare
Shew_3230 +0.6 3.7 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) compare
Shew_0620 +0.6 0.7 ion transport 2 domain-containing protein (RefSeq) compare
Shew_1163 +0.6 1.1 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_1883 +0.6 0.5 hypothetical protein (RefSeq) compare
Shew_3126 +0.6 1.7 2'-5' RNA ligase (RefSeq) compare
Shew_3404 +0.6 0.6 NosL family protein (RefSeq) compare
Shew_1607 +0.6 0.7 thioesterase superfamily protein (RefSeq) compare
Shew_0359 fre +0.6 2.3 FMN reductase (RefSeq) compare
Shew_3165 +0.6 3.4 polar amino acid ABC transporter, inner membrane subunit (RefSeq) compare
Shew_3166 +0.6 1.3 extracellular solute-binding protein (RefSeq) compare
Shew_0678 +0.6 1.2 protoporphyrinogen oxidase (RefSeq) compare
Shew_3653 +0.6 0.6 hypothetical protein (RefSeq) compare
Shew_2957 +0.6 1.7 hypothetical protein (RefSeq) compare
Shew_3599 +0.6 2.9 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq) compare


Specific Phenotypes

For 10 genes in this experiment

For stress Thallium(I) acetate in Shewanella loihica PV-4

For stress Thallium(I) acetate across organisms