Experiment set2IT028 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Thiamine

Group: nutrient dropout
Media: CDM1 + no Thiamine, pH=7
Culturing: Bifido_ML2, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Anthony Shiver on 12/9/2019
Growth plate: CDM1_nutrientdrop C4

Specific Phenotypes

For 2 genes in this experiment

For nutrient dropout no Thiamine in Bifidobacterium breve UCC2003

For nutrient dropout no Thiamine across organisms

SEED Subsystems

Subsystem #Specific
Thiamin biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
hydroxymethylpyrimidine salvage 2 2 2
thiamine diphosphate salvage II 5 4 3
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I 2 2 1
thiamine diphosphate salvage IV (yeast) 7 6 3
thiamine diphosphate formation from pyrithiamine and oxythiamine (yeast) 8 5 3
thiamine diphosphate salvage V 3 2 1
superpathway of thiamine diphosphate biosynthesis III (eukaryotes) 7 4 1
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II 8 3 1
superpathway of thiamine diphosphate biosynthesis I 10 6 1
superpathway of thiamine diphosphate biosynthesis II 11 7 1