Experiment set2IT027 for Pseudomonas fluorescens FW300-N2E3
L-Asparagine carbon source
Quality Metrics:
Time0 | 6/11/2014 pseudo3_N2E3_ML2_set2 | which Time0s the sample was compared to |
cor12 | 0.19 | rank correlation(fit1, fit2), where fit1 is fitness for the first half (10-50%) and fit2 is fitness for the second half (50-90%) of each gene |
maxFit | 3.25 | The maximum fitness value |
opcor | 0.15 | rank correlation(upstream gene, downstream gene) over pairs that are adjacent and likely to be in the same operon |
adjcor | 0.08 | like opcor but for adjacent genes that are not on the same strand |
gccor | -0.01 | linear correlation of gene fitness and gene GC content |
mad12 | 0.19 | median absolute difference of fit1, fit2 |
mad12c | 0.88 | median absolute difference of log count for 1st and 2nd half of genes in this sample |
mad12c_t0 | 0.85 | like mad12c but for the Time0s |
gMed | 148 | median reads per gene in this sample |
gMedt0 | 468 | median reads per gene in the Time0 sample |
gMean | 217 | mean reads per gene in this sample |
nMapped | 1.983 M | #reads for this sample that corresponded to a known strain (in millions) |
nPastEnd | 0.014 M | #reads that corresponded to a strain that has an insertion within the suicide vector instead of within the genome. |
nGenic | 1.112 M | #reads that lie within central 10-90% of a gene |
nUsed | 1.091 M | #reads used to estimate gene fitness (genic and enough coverage for strain and for gene) |
Specific Phenotypes
For 4 genes in this experiment
For carbon source L-Asparagine in Pseudomonas fluorescens FW300-N2E3