Experiment set2IT027 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_09950 -4.8 -3.3 aspartate ammonia-lyase compare
AO353_13070 -3.9 -7.4 phosphoserine phosphatase compare
AO353_07220 -3.7 -7.5 anthranilate synthase compare
AO353_22800 -3.6 -2.5 sulfite reductase compare
AO353_07230 -3.6 -14.4 anthranilate synthase compare
AO353_09960 -3.6 -8.4 L-asparaginase (EC 3.5.1.1) (from data) conserved
AO353_12365 -3.6 -4.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_05115 -3.6 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12075 -3.5 -7.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20635 -3.5 -10.7 3-isopropylmalate dehydrogenase compare
AO353_20625 -3.5 -4.7 3-isopropylmalate dehydratase compare
AO353_10710 -3.5 -2.4 tryptophan synthase subunit beta compare
AO353_09945 -3.4 -5.2 LysR family transcriptional regulator compare
AO353_12070 -3.4 -8.7 imidazoleglycerol-phosphate dehydratase compare
AO353_20665 -3.3 -10.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_14400 -3.3 -3.2 Fis family transcriptional regulator compare
AO353_20695 -3.3 -6.2 O-succinylhomoserine sulfhydrylase compare
AO353_08180 -3.2 -12.5 homoserine O-acetyltransferase compare
AO353_09955 -3.2 -14.8 sodium:alanine symporter conserved
AO353_02070 -3.2 -7.4 prephenate dehydratase compare
AO353_08345 -3.1 -8.3 dihydroxy-acid dehydratase compare
AO353_05110 -3.1 -10.6 histidinol dehydrogenase compare
AO353_14505 -3.1 -11.6 ketol-acid reductoisomerase compare
AO353_20620 -3.1 -7.0 isopropylmalate isomerase compare
AO353_12085 -3.1 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_02075 -3.0 -10.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_04155 -3.0 -11.5 ornithine carbamoyltransferase compare
AO353_19090 -3.0 -3.4 MarR family transcriptional regulator compare
AO353_08475 -2.9 -9.1 phosphoserine phosphatase compare
AO353_08185 -2.9 -9.8 methionine biosynthesis protein MetW compare
AO353_08685 -2.9 -8.9 N-acetylglutamate synthase compare
AO353_07210 -2.9 -6.1 indole-3-glycerol-phosphate synthase compare
AO353_04355 -2.9 -1.9 homoserine dehydrogenase compare
AO353_09240 -2.8 -2.7 acetylglutamate kinase compare
AO353_14495 -2.7 -10.1 acetolactate synthase 3 catalytic subunit compare
AO353_14500 -2.7 -6.4 acetolactate synthase 3 regulatory subunit compare
AO353_12360 -2.6 -8.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_05075 -2.6 -10.2 adenylylsulfate kinase compare
AO353_00610 -2.6 -3.5 cytochrome C oxidase Cbb3 compare
AO353_07155 -2.6 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12500 -2.6 -1.8 shikimate kinase compare
AO353_15925 -2.5 -11.5 2-isopropylmalate synthase compare
AO353_10670 -2.5 -7.4 shikimate dehydrogenase compare
AO353_04105 -2.5 -8.5 argininosuccinate synthase compare
AO353_08015 -2.5 -7.1 5,10-methylenetetrahydrofolate reductase compare
AO353_13165 -2.5 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_14115 -2.4 -6.5 gamma-glutamyl kinase compare
AO353_09000 -2.4 -5.3 argininosuccinate lyase compare
AO353_05080 -2.4 -10.8 sulfate adenylyltransferase compare
AO353_00430 -2.4 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07215 -2.4 -7.7 anthranilate phosphoribosyltransferase compare
AO353_14370 -2.3 -6.9 glucose-6-phosphate isomerase compare
AO353_08780 -2.3 -8.1 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08510 -2.3 -5.7 3-phosphoglycerate dehydrogenase compare
AO353_00620 -2.3 -3.4 cytochrome C oxidase Cbb3 compare
AO353_19060 -2.2 -5.5 CysB family transcriptional regulator compare
AO353_03580 -2.2 -3.8 ATP-dependent DNA helicase RuvB compare
AO353_14220 -2.1 -2.0 ribosomal large subunit pseudouridine synthase D compare
AO353_27650 -2.1 -4.6 cell division protein FtsK compare
AO353_20175 -2.1 -4.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_06495 -2.1 -5.2 gamma-glutamyl phosphate reductase compare
AO353_08165 -2.0 -3.3 pyrroline-5-carboxylate reductase compare
AO353_10455 -2.0 -1.9 tRNA modification GTPase MnmE compare
AO353_18540 -2.0 -2.9 pseudouridine synthase compare
AO353_02250 -2.0 -4.3 chorismate synthase compare
AO353_12115 -1.9 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_11775 -1.9 -6.8 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_00650 -1.9 -3.4 cytochrome biogenesis protein compare
AO353_15900 -1.9 -3.1 GTP-binding protein compare
AO353_16290 -1.9 -9.2 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) conserved
AO353_15170 -1.9 -3.7 cytochrome D ubiquinol oxidase subunit III compare
AO353_10705 -1.8 -4.3 tryptophan synthase subunit alpha compare
AO353_12090 -1.8 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_01410 -1.8 -3.7 ribonuclease E compare
AO353_03795 -1.8 -4.1 fumarate hydratase compare
AO353_14405 -1.8 -10.7 ATPase compare
AO353_12460 -1.8 -7.4 malate dehydrogenase compare
AO353_16285 -1.7 -7.9 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) conserved
AO353_11165 -1.7 -8.7 hypothetical protein compare
AO353_15250 -1.7 -3.4 cytochrome B compare
AO353_03520 -1.7 -3.3 hypothetical protein compare
AO353_00825 -1.7 -3.4 porin compare
AO353_02685 -1.6 -3.4 phosphoribosylglycinamide formyltransferase compare
AO353_08980 -1.6 -2.7 heme biosynthesis operon protein HemX compare
AO353_05105 -1.6 -8.4 histidinol-phosphate aminotransferase compare
AO353_07355 -1.6 -4.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_06040 -1.6 -3.5 exodeoxyribonuclease V subunit alpha compare
AO353_24260 -1.5 -2.4 hypothetical protein compare
AO353_09890 -1.5 -4.7 phosphate ABC transporter ATP-binding protein compare
AO353_08485 -1.5 -9.9 threonine dehydratase compare
AO353_10630 -1.5 -4.5 16S rRNA methyltransferase compare
AO353_16280 -1.5 -6.1 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 (from data) compare
AO353_02810 -1.5 -6.5 histidine kinase compare
AO353_03590 -1.4 -3.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_16270 -1.4 -10.4 histidine kinase conserved
AO353_00750 -1.4 -3.6 GntR family transcriptional regulator compare
AO353_16805 -1.4 -4.7 recombinase RecA compare
AO353_07075 -1.4 -4.0 elongation factor Tu compare
AO353_20170 -1.4 -3.9 trigger factor compare
AO353_11750 -1.4 -2.5 ATPase compare
AO353_16265 -1.3 -5.1 Fis family transcriptional regulator compare
AO353_09135 -1.3 -2.4 cytochrome C compare
AO353_06720 -1.2 -2.1 NrdR family transcriptional regulator compare
AO353_14585 -1.2 -4.5 ribosomal-protein-alanine acetyltransferase compare
AO353_11770 -1.2 -1.8 molecular chaperone Hsp33 compare
AO353_05230 -1.2 -6.0 ribonuclease G compare
AO353_20565 -1.2 -1.8 tRNA-Ala compare
AO353_02000 -1.2 -3.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_10945 -1.2 -2.3 cytochrome C compare
AO353_20200 -1.2 -3.4 peptidylprolyl isomerase compare
AO353_23620 -1.2 -1.9 hypothetical protein compare
AO353_17750 -1.2 -2.5 transcriptional regulator compare
AO353_27675 -1.2 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_04565 -1.2 -4.1 nucleoid-associated protein compare
AO353_18890 -1.2 -4.3 cytochrome C compare
AO353_16940 -1.2 -4.2 deoxycytidine triphosphate deaminase compare
AO353_11530 -1.2 -6.0 diguanylate cyclase compare
AO353_09050 -1.2 -2.8 recombinase XerC compare
AO353_04175 -1.2 -3.0 glycerol uptake facilitator GlpF compare
AO353_28425 -1.2 -3.0 TetR family transcriptional regulator compare
AO353_09905 -1.1 -6.7 phosphate-binding protein compare
AO353_13640 -1.1 -3.4 histidine kinase compare
AO353_10040 -1.1 -5.6 transcriptional regulator compare
AO353_12345 -1.1 -1.7 twin-arginine protein translocation system subunit TatC compare
AO353_20185 -1.1 -4.5 DNA-binding protein compare
AO353_00605 -1.1 -4.5 cytochrome C oxidase Cbb3 compare
AO353_04520 -1.1 -3.8 elongation factor 4 compare
AO353_17035 -1.1 -3.8 hypothetical protein compare
AO353_02280 -1.1 -1.5 DNA mismatch repair protein MutS compare
AO353_03585 -1.1 -2.1 ATP-dependent DNA helicase RuvA compare
AO353_04365 -1.1 -3.7 recombinase XerD compare
AO353_05800 -1.1 -3.7 hypothetical protein compare
AO353_02465 -1.1 -1.3 hypothetical protein compare
AO353_10930 -1.0 -5.0 DNA polymerase I compare
AO353_21615 -1.0 -6.6 methionine synthase compare
AO353_20410 -1.0 -2.1 hypothetical protein compare
AO353_19295 -1.0 -2.3 hypothetical protein compare
AO353_03670 -1.0 -3.6 ornithine acetyltransferase compare
AO353_14775 -1.0 -4.0 hypothetical protein compare
AO353_20095 -1.0 -3.7 histidine kinase compare
AO353_24415 -1.0 -1.8 glutamine ABC transporter ATP-binding protein compare
AO353_08645 -1.0 -2.5 transporter compare
AO353_16260 -1.0 -6.4 hypothetical protein compare
AO353_03710 -1.0 -2.1 formyltetrahydrofolate deformylase compare
AO353_21625 -1.0 -1.8 Fe/S biogenesis protein NfuA compare
AO353_06850 -1.0 -3.4 MFS transporter compare
AO353_08195 -1.0 -3.2 non-canonical purine NTP pyrophosphatase compare
AO353_22025 -1.0 -2.1 iron-sulfur cluster repair di-iron protein compare
AO353_05340 -1.0 -3.0 histidine kinase compare
AO353_14940 -1.0 -2.5 malate:quinone oxidoreductase compare
AO353_12650 -1.0 -1.3 hypothetical protein compare
AO353_20585 -1.0 -1.9 TetR family transcriptional regulator compare
AO353_12940 -1.0 -4.6 glycosyl transferase compare
AO353_12880 -1.0 -1.6 ADP-heptose--LPS heptosyltransferase compare
AO353_12105 -1.0 -3.9 peptidase S41 compare
AO353_03715 -1.0 -1.8 H-NS histone compare
AO353_22280 -0.9 -1.3 hypothetical protein compare
AO353_08540 -0.9 -5.7 alpha/beta hydrolase compare
AO353_10435 -0.9 -5.4 chromosome partitioning protein compare
AO353_19145 -0.9 -2.6 protease HtpX compare
AO353_13140 -0.9 -3.6 tRNA dimethylallyltransferase compare
AO353_02060 -0.9 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_15905 -0.9 -4.0 outer membrane protein assembly factor BamB compare
AO353_08880 -0.9 -1.7 exopolyphosphatase compare
AO353_19530 -0.9 -1.7 quinohemoprotein amine dehydrogenase compare
AO353_27685 -0.9 -3.4 cold-shock protein compare
AO353_08875 -0.9 -2.0 amino acid ABC transporter ATP-binding protein compare
AO353_02720 -0.9 -3.5 cysteine synthase compare
AO353_12935 -0.9 -2.7 glycosyltransferase compare
AO353_15725 -0.9 -2.8 hypothetical protein compare
AO353_03115 -0.9 -3.1 TetR family transcriptional regulator compare
AO353_23495 -0.9 -1.8 SAM-dependent methyltransferase compare
AO353_22330 -0.9 -3.0 AraC family transcriptional regulator compare
AO353_26285 -0.8 -1.8 hypothetical protein compare
AO353_06050 -0.8 -3.7 exodeoxyribonuclease V subunit gamma compare
AO353_00635 -0.8 -2.0 hypothetical protein compare
AO353_10055 -0.8 -5.7 DNA helicase II compare
AO353_21110 -0.8 -1.9 hypothetical protein compare
AO353_03815 -0.8 -1.6 heme utilization protein compare
AO353_18960 -0.8 -1.6 terminase compare
AO353_24130 -0.8 -2.0 hypothetical protein compare
AO353_08505 -0.8 -5.4 FAD-linked oxidase compare
AO353_21735 -0.8 -3.1 IclR family transcriptional regulator compare
AO353_05240 -0.8 -1.8 rod shape-determining protein MreD compare
AO353_04500 -0.8 -1.7 DNA repair protein RecO compare
AO353_08115 -0.8 -3.0 energy transducer TonB compare
AO353_27710 -0.8 -1.1 DNA repair protein compare
AO353_26945 -0.8 -1.5 transcriptional regulator compare
AO353_27720 -0.8 -2.6 cupin compare
AO353_03630 -0.8 -5.4 porin compare
AO353_03615 -0.8 -1.7 cold-shock protein compare
AO353_08895 -0.8 -3.0 hypothetical protein compare
AO353_20370 -0.8 -1.9 MerR family transcriptional regulator compare
AO353_13245 -0.8 -3.0 hypothetical protein compare
AO353_11720 -0.8 -1.9 taurine transporter ATP-binding subunit compare
AO353_18325 -0.8 -1.7 hypothetical protein compare
AO353_13205 -0.8 -3.1 23S rRNA methyltransferase compare
AO353_08265 -0.8 -2.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_06045 -0.8 -3.5 exodeoxyribonuclease V subunit beta compare
AO353_10825 -0.8 -5.6 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Asparagine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Asparagine across organisms