Experiment set2IT027 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Asparagine carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_02735 +3.3 29.6 chemotaxis protein CheY compare
AO353_21830 +3.1 26.6 chemotaxis protein CheY compare
AO353_19340 +2.8 24.7 amino acid ABC transporter substrate-binding protein compare
AO353_09060 +2.4 8.2 hypothetical protein compare
AO353_19335 +2.0 12.7 TetR family transcriptional regulator compare
AO353_11155 +2.0 17.8 thioesterase compare
AO353_16615 +1.8 15.5 RNA polymerase sigma factor RpoS compare
AO353_14030 +1.6 13.8 ABC transporter ATP-binding protein compare
AO353_11160 +1.6 8.1 GntR family transcriptional regulator compare
AO353_24340 +1.5 3.5 TetR family transcriptional regulator compare
AO353_20925 +1.4 1.4 hypothetical protein compare
AO353_10780 +1.3 2.9 DNA-binding protein compare
AO353_27890 +1.3 6.2 RpiR family transcriptional regulator compare
AO353_13300 +1.3 1.8 LOG family protein compare
AO353_01055 +1.2 10.6 AraC family transcriptional regulator compare
AO353_09065 +1.2 5.4 hypothetical protein compare
AO353_01065 +1.2 8.7 acetyl-CoA acetyltransferase compare
AO353_13660 +1.2 7.9 tRNA-dihydrouridine synthase B compare
AO353_27905 +1.1 4.1 N-formylglutamate amidohydrolase compare
AO353_12240 +1.1 5.9 histidine utilization repressor compare
AO353_13100 +1.1 1.9 GTPase RsgA compare
AO353_01070 +1.0 9.5 poly(R)-hydroxyalkanoic acid synthase compare
AO353_26390 +1.0 1.8 glyoxalase compare
AO353_08775 +1.0 2.7 cell division protein ZapA compare
AO353_09885 +0.9 1.8 transcriptional regulator PhoU compare
AO353_20000 +0.9 3.1 phosphoribosyltransferase compare
AO353_12720 +0.9 2.1 hypothetical protein compare
AO353_01060 +0.9 5.8 3-ketoacyl-ACP reductase compare
AO353_18985 +0.9 2.6 hypothetical protein compare
AO353_26525 +0.9 1.4 hypothetical protein compare
AO353_06725 +0.8 1.6 hypothetical protein compare
AO353_12580 +0.8 1.2 type II secretory protein PulK compare
AO353_03005 +0.8 4.4 succinylarginine dihydrolase compare
AO353_10510 +0.8 1.7 benzoate transporter compare
AO353_02570 +0.8 2.8 hypothetical protein compare
AO353_21300 +0.7 3.1 glycolate oxidase iron-sulfur subunit compare
AO353_09915 +0.7 5.1 long-chain acyl-CoA thioester hydrolase compare
AO353_02205 +0.7 3.4 hypothetical protein compare
AO353_09275 +0.7 2.3 DNA-directed RNA polymerase subunit omega compare
AO353_01020 +0.7 2.9 hypothetical protein compare
AO353_22985 +0.7 1.9 hypothetical protein compare
AO353_04185 +0.7 3.8 DeoR family transcriptional regulator compare
AO353_00495 +0.7 1.1 DNA topoisomerase I compare
AO353_03210 +0.7 2.5 GNAT family acetyltransferase compare
AO353_24175 +0.6 2.0 hypothetical protein compare
AO353_23835 +0.6 2.2 hypothetical protein compare
AO353_03215 +0.6 2.3 pyridoxamine 5'-phosphate oxidase compare
AO353_05810 +0.6 2.7 dehydrogenase compare
AO353_11145 +0.6 4.3 aminobenzoate oxygenase compare
AO353_15000 +0.6 2.1 glycerate dehydrogenase compare
AO353_26220 +0.6 1.8 hypothetical protein compare
AO353_19310 +0.6 1.5 enoyl-CoA hydratase compare
AO353_27910 +0.6 3.9 porin compare
AO353_14485 +0.6 1.2 pseudouridine synthase compare
AO353_19810 +0.6 1.3 filamentous hemagglutinin compare
AO353_00440 +0.6 2.6 hypothetical protein compare
AO353_15930 +0.6 2.7 peptidase M23 compare
AO353_19020 +0.6 2.1 hypothetical protein compare
AO353_06345 +0.6 5.6 histidine kinase compare
AO353_01045 +0.6 2.2 phasin compare
AO353_19250 +0.6 1.3 molybdenum cofactor guanylyltransferase compare
AO353_12540 +0.6 2.1 hypothetical protein compare
AO353_12790 +0.6 1.2 hypothetical protein compare
AO353_19025 +0.6 4.8 acetyltransferase compare
AO353_05490 +0.6 3.1 transcriptional regulator compare
AO353_12265 +0.6 3.5 hypothetical protein compare
AO353_23245 +0.6 1.7 DNA-3-methyladenine glycosylase compare
AO353_04325 +0.6 0.9 hypothetical protein compare
AO353_14225 +0.6 4.1 laccase compare
AO353_21100 +0.6 2.0 DNA-binding protein compare
AO353_22700 +0.6 1.6 LexA family transcriptional regulator compare
AO353_19325 +0.6 2.8 2,4-dienoyl-CoA reductase compare
AO353_28380 +0.6 1.7 GntR family transcriptional regulator compare
AO353_00665 +0.6 2.0 adenine phosphoribosyltransferase compare
AO353_17935 +0.6 1.8 hypothetical protein compare
AO353_06135 +0.6 1.9 NADPH:quinone reductase compare
AO353_06540 +0.6 1.5 hypothetical protein compare
AO353_04625 +0.6 4.6 ATP-dependent RNA helicase RhlB compare
AO353_19280 +0.6 1.7 hypothetical protein compare
AO353_07270 +0.6 1.7 transcriptional regulator compare
AO353_09745 +0.6 1.1 hypothetical protein compare
AO353_17985 +0.6 2.1 LysR family transcriptional regulator compare
AO353_03510 +0.6 1.9 glycine cleavage system protein T compare
AO353_05070 +0.6 2.2 acyltransferase compare
AO353_27660 +0.5 1.9 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_27130 +0.5 1.5 hypothetical protein compare
AO353_00260 +0.5 1.6 hypothetical protein compare
AO353_17965 +0.5 2.3 hypothetical protein compare
AO353_21825 +0.5 3.2 GNAT family acetyltransferase compare
AO353_28375 +0.5 3.0 MFS transporter compare
AO353_08060 +0.5 1.7 hypothetical protein compare
AO353_28070 +0.5 2.2 LysR family transcriptional regulator compare
AO353_22150 +0.5 0.9 iron transporter compare
AO353_19040 +0.5 3.5 thioredoxin compare
AO353_15290 +0.5 3.5 methyltransferase compare
AO353_08030 +0.5 4.0 DEAD/DEAH box helicase compare
AO353_04035 +0.5 1.9 exclusion suppressor FxsA compare
AO353_18600 +0.5 1.9 flagellar basal-body rod protein FlgG compare
AO353_06455 +0.5 1.5 D-alanyl-D-alanine carboxypeptidase compare
AO353_14970 +0.5 1.9 hypothetical protein compare
AO353_06490 +0.5 1.8 nicotinate-nucleotide adenylyltransferase compare
AO353_26870 +0.5 1.7 AP endonuclease compare
AO353_22500 +0.5 1.2 hypothetical protein compare
AO353_27900 +0.5 2.6 glutamine synthetase compare
AO353_00890 +0.5 2.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_07250 +0.5 1.2 polyamine ABC transporter permease compare
AO353_26195 +0.5 1.3 hypothetical protein compare
AO353_02885 +0.5 1.3 flagellar biosynthesis protein FlgN compare
AO353_12270 +0.5 1.9 histidine ammonia-lyase compare
AO353_00195 +0.5 1.3 virion morphogenesis protein compare
AO353_09235 +0.5 3.3 phosphoglucomutase compare
AO353_23385 +0.5 2.2 trans-2-enoyl-CoA reductase compare
AO353_12260 +0.5 2.5 ABC transporter permease compare
AO353_12670 +0.5 1.9 glycosyl transferase compare
AO353_26260 +0.5 2.2 hypothetical protein compare
AO353_25640 +0.5 1.5 AsnC family transcriptional regulator compare
AO353_19505 +0.5 1.5 FAD-dependent oxidoreductase compare
AO353_01195 +0.5 3.0 hypothetical protein compare
AO353_03110 +0.5 2.4 hydrolase compare
AO353_23640 +0.5 3.8 RND transporter compare
AO353_04930 +0.5 1.6 flavodoxin compare
AO353_07900 +0.5 1.2 hypothetical protein compare
AO353_11945 +0.5 0.8 4-oxalocrotonate tautomerase compare
AO353_21445 +0.5 1.7 cation:proton antiporter compare
AO353_07785 +0.5 2.5 ABC transporter for Carnitine, permease component (from data) compare
AO353_25450 +0.5 1.3 cyanate hydratase compare
AO353_19070 +0.5 1.7 hypothetical protein compare
AO353_19045 +0.5 2.9 2-dehydropantoate 2-reductase compare
AO353_12730 +0.5 1.8 hypothetical protein compare
AO353_09560 +0.5 0.9 type VI secretion protein compare
AO353_26520 +0.5 1.5 TetR family transcriptional regulator compare
AO353_09025 +0.5 1.7 nucleoside diphosphate kinase regulator compare
AO353_02765 +0.5 1.7 NAD(P)H-quinone oxidoreductase compare
AO353_15260 +0.5 2.6 stringent starvation protein A compare
AO353_27590 +0.5 2.4 hypothetical protein compare
AO353_11280 +0.5 1.9 phage tail protein compare
AO353_22195 +0.5 1.1 metal ABC transporter permease compare
AO353_06030 +0.5 3.0 amino acid ABC transporter substrate-binding protein compare
AO353_26935 +0.5 1.3 LysR family transcriptional regulator compare
AO353_28815 +0.5 1.3 hypothetical protein compare
AO353_15490 +0.5 1.0 hypothetical protein compare
AO353_20455 +0.5 2.0 HAD family hydrolase compare
AO353_19760 +0.5 1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_18130 +0.5 1.4 hypothetical protein compare
AO353_23350 +0.5 1.4 hypothetical protein compare
AO353_19565 +0.5 1.6 vanillate O-demethylase oxidoreductase VanB compare
AO353_01705 +0.5 1.9 alpha/beta hydrolase compare
AO353_21090 +0.5 2.6 hypothetical protein compare
AO353_17065 +0.4 3.4 hypothetical protein compare
AO353_23405 +0.4 1.1 hypothetical protein compare
AO353_18795 +0.4 2.5 protein phosphatase compare
AO353_25405 +0.4 1.6 molybdenum cofactor biosynthesis protein B compare
AO353_15020 +0.4 3.9 hypothetical protein compare
AO353_19035 +0.4 2.7 pilus assembly protein PilZ compare
AO353_00025 +0.4 2.0 phenazine biosynthesis protein PhzF compare
AO353_09705 +0.4 1.6 hypothetical protein compare
AO353_04480 +0.4 1.7 NGG1p interacting factor NIF3 compare
AO353_24815 +0.4 1.7 amino acid ABC transporter substrate-binding protein compare
AO353_11195 +0.4 3.7 hemolysin secretion protein D compare
AO353_14945 +0.4 1.4 hypothetical protein compare
AO353_15280 +0.4 2.1 hypothetical protein compare
AO353_02580 +0.4 3.9 Long-chain fatty acid transport protein compare
AO353_21540 +0.4 1.5 type VI secretion protein compare
AO353_23950 +0.4 1.0 hypothetical protein compare
AO353_00285 +0.4 2.2 Pyocin activator protein PrtN compare
AO353_27445 +0.4 1.6 hypothetical protein compare
AO353_08955 +0.4 2.3 transcriptional regulator compare
AO353_04935 +0.4 2.2 histidine kinase compare
AO353_23635 +0.4 1.9 hypothetical protein compare
AO353_01050 +0.4 3.6 poly(3-hydroxyalkanoate) synthetase compare
AO353_23910 +0.4 1.3 response regulator compare
AO353_26840 +0.4 1.5 RND transporter compare
AO353_17060 +0.4 2.9 cysteine synthase compare
AO353_01800 +0.4 1.9 hypothetical protein compare
AO353_12125 +0.4 2.3 glutaredoxin compare
AO353_20910 +0.4 1.5 MerR family transcriptional regulator compare
AO353_11060 +0.4 1.4 holliday junction resolvasome, helicase subunit compare
AO353_27315 +0.4 2.1 hypothetical protein compare
AO353_27885 +0.4 2.6 precorrin 6A synthase compare
AO353_04020 +0.4 2.4 XRE family transcriptional regulator compare
AO353_11850 +0.4 1.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_22675 +0.4 1.8 hypothetical protein compare
AO353_01075 +0.4 2.2 hypothetical protein compare
AO353_15015 +0.4 3.4 adhesin compare
AO353_21290 +0.4 1.0 hypothetical protein compare
AO353_24765 +0.4 1.6 GCN5 family acetyltransferase compare
AO353_19135 +0.4 2.0 aromatic ring-opening dioxygenase LigB compare
AO353_20395 +0.4 2.2 GMP synthase compare
AO353_26595 +0.4 1.2 copper resistance protein CopD compare
AO353_00065 +0.4 1.7 oxidoreductase compare
AO353_08965 +0.4 2.1 transcriptional regulator compare
AO353_07290 +0.4 2.8 mannose-1-phosphate guanylyltransferase compare
AO353_28200 +0.4 1.3 ribosomal protein S3AE compare
AO353_01650 +0.4 2.0 chemotaxis protein compare
AO353_25445 +0.4 1.3 carbonic anhydrase compare
AO353_27155 +0.4 0.9 hypothetical protein compare
AO353_17525 +0.4 1.8 tRNA-Gly compare
AO353_24870 +0.4 1.3 hypothetical protein compare
AO353_25275 +0.4 2.0 hypothetical protein compare
AO353_17810 +0.4 2.4 LysR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Asparagine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Asparagine across organisms