Experiment set2IT027 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with benzoic acid 0.1 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS09705 +0.8 2.8 copper oxidase compare
CA265_RS05575 +0.7 1.8 hypothetical protein compare
CA265_RS00515 +0.6 2.4 hypothetical protein compare
CA265_RS07230 +0.6 1.3 hypothetical protein compare
CA265_RS08570 +0.6 2.2 dehydratase compare
CA265_RS06040 +0.6 1.8 hypothetical protein compare
CA265_RS05260 +0.6 2.3 hypothetical protein compare
CA265_RS20270 +0.6 2.1 methionine--tRNA ligase compare
CA265_RS18550 +0.6 0.8 N-acetyltransferase compare
CA265_RS17950 +0.6 2.5 hypothetical protein compare
CA265_RS00490 +0.6 1.4 hypothetical protein compare
CA265_RS10480 +0.5 2.0 hypothetical protein compare
CA265_RS00465 +0.5 2.7 cupin compare
CA265_RS14960 +0.5 2.6 hypothetical protein compare
CA265_RS01165 +0.5 2.1 hypothetical protein compare
CA265_RS05420 +0.5 2.0 hypothetical protein compare
CA265_RS01150 +0.5 2.7 hypothetical protein compare
CA265_RS25435 +0.5 1.6 hypothetical protein compare
CA265_RS23735 +0.5 1.1 alpha/beta hydrolase compare
CA265_RS23545 +0.5 0.9 NADH dehydrogenase subunit D compare
CA265_RS04305 +0.5 1.3 hypothetical protein compare
CA265_RS02170 +0.5 1.3 hypothetical protein compare
CA265_RS11480 +0.5 1.8 VOC family protein compare
CA265_RS06885 +0.5 0.7 hypothetical protein compare
CA265_RS24675 +0.5 2.3 RNA polymerase compare
CA265_RS25335 +0.5 1.0 hypothetical protein compare
CA265_RS24040 +0.4 1.9 seryl-tRNA synthetase compare
CA265_RS06595 +0.4 0.8 Arc family DNA binding domain-containing protein compare
CA265_RS24625 +0.4 3.2 LacI family transcriptional regulator compare
CA265_RS06535 +0.4 2.1 hypothetical protein compare
CA265_RS12800 +0.4 2.0 NAD(P)H-dependent oxidoreductase compare
CA265_RS02245 +0.4 2.7 hypothetical protein compare
CA265_RS23120 +0.4 1.3 hypothetical protein compare
CA265_RS16550 +0.4 0.8 acyl carrier protein compare
CA265_RS06405 +0.4 0.9 hypothetical protein compare
CA265_RS23045 +0.4 1.8 cold-shock protein compare
CA265_RS18085 +0.4 1.3 hypothetical protein compare
CA265_RS04445 +0.4 1.5 hypothetical protein compare
CA265_RS01560 +0.4 0.8 circadian clock protein KaiB compare
CA265_RS15725 +0.4 2.3 hypothetical protein compare
CA265_RS24605 +0.4 0.8 hypothetical protein compare
CA265_RS03065 +0.4 1.8 hypothetical protein compare
CA265_RS07535 +0.4 1.4 ATPase compare
CA265_RS24445 +0.4 1.7 hypothetical protein compare
CA265_RS21330 +0.4 2.4 TetR family transcriptional regulator compare
CA265_RS21060 +0.4 0.8 hypothetical protein compare
CA265_RS20390 +0.4 2.7 hypothetical protein compare
CA265_RS23250 +0.4 1.4 hypothetical protein compare
CA265_RS21365 +0.4 1.5 thiol reductase thioredoxin compare
CA265_RS05945 +0.4 1.2 polysaccharide biosynthesis protein GtrA compare
CA265_RS16725 +0.4 1.8 hypothetical protein compare
CA265_RS24265 +0.4 1.6 hypothetical protein compare
CA265_RS09320 +0.4 1.4 hypothetical protein compare
CA265_RS21395 +0.4 1.3 hypothetical protein compare
CA265_RS22205 +0.4 2.5 hypothetical protein compare
CA265_RS00395 +0.4 1.3 hypothetical protein compare
CA265_RS24490 +0.4 1.4 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS10660 +0.4 1.4 acyl dehydratase compare
CA265_RS19640 +0.4 1.5 hypothetical protein compare
CA265_RS00940 +0.4 1.4 hypothetical protein compare
CA265_RS18870 +0.4 1.2 hypothetical protein compare
CA265_RS24995 +0.4 2.3 hypothetical protein compare
CA265_RS25345 +0.4 1.2 hypothetical protein compare
CA265_RS21565 +0.4 0.6 cold-shock protein compare
CA265_RS03665 +0.4 1.5 hypothetical protein compare
CA265_RS11740 +0.4 1.1 hypothetical protein compare
CA265_RS03495 +0.4 0.9 cytochrome c biogenesis protein compare
CA265_RS04785 +0.3 2.1 hypothetical protein compare
CA265_RS20930 +0.3 2.3 hypothetical protein compare
CA265_RS17520 +0.3 2.1 hypothetical protein compare
CA265_RS02315 +0.3 1.7 single-stranded DNA-binding protein compare
CA265_RS14640 +0.3 0.9 UDP-glucose 4-epimerase compare
CA265_RS22600 +0.3 2.3 hypothetical protein compare
CA265_RS10485 +0.3 1.8 hypothetical protein compare
CA265_RS01205 +0.3 1.9 import component protein compare
CA265_RS10615 +0.3 1.7 diacylglycerol kinase compare
CA265_RS12330 +0.3 1.0 response regulator compare
CA265_RS23265 +0.3 1.1 iron-binding protein compare
CA265_RS17915 +0.3 1.5 hypothetical protein compare
CA265_RS25015 +0.3 1.8 hypothetical protein compare
CA265_RS04780 +0.3 1.9 polyketide cyclase compare
CA265_RS01100 +0.3 1.8 transcriptional regulator compare
CA265_RS02665 +0.3 2.3 hypothetical protein compare
CA265_RS25395 +0.3 1.3 cysteine hydrolase compare
CA265_RS07840 +0.3 1.4 hypothetical protein compare
CA265_RS20320 +0.3 2.9 hypothetical protein compare
CA265_RS03100 +0.3 2.3 glucose dehydrogenase compare
CA265_RS18395 +0.3 1.5 hypothetical protein compare
CA265_RS14775 +0.3 1.4 hypothetical protein compare
CA265_RS14955 +0.3 1.4 hypothetical protein compare
CA265_RS03765 +0.3 1.2 hypothetical protein compare
CA265_RS12855 +0.3 0.8 hypothetical protein compare
CA265_RS00300 +0.3 1.5 damage-inducible protein DinB compare
CA265_RS22930 +0.3 2.2 hypothetical protein compare
CA265_RS11055 +0.3 1.8 hypothetical protein compare
CA265_RS03910 +0.3 1.7 hypothetical protein compare
CA265_RS22595 +0.3 2.0 methyltransferase type 11 compare
CA265_RS15035 +0.3 1.3 prevent-host-death protein compare
CA265_RS02125 +0.3 1.1 hypothetical protein compare
CA265_RS25160 +0.3 1.7 glycosyl transferase family 2 compare
CA265_RS18485 +0.3 1.3 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS24945 +0.3 1.1 hypothetical protein compare
CA265_RS20690 +0.3 1.2 hypothetical protein compare
CA265_RS21600 +0.3 1.6 hypothetical protein compare
CA265_RS19115 +0.3 2.0 23S rRNA (adenine(2503)-C(2))-methyltransferase compare
CA265_RS16750 +0.3 1.7 hypothetical protein compare
CA265_RS20315 +0.3 2.5 hypothetical protein compare
CA265_RS17570 +0.3 1.3 peptidylprolyl isomerase compare
CA265_RS02090 +0.3 1.3 ABC transporter ATP-binding protein compare
CA265_RS14180 +0.3 1.1 hypothetical protein compare
CA265_RS15270 +0.3 1.7 hypothetical protein compare
CA265_RS11030 +0.3 0.6 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS19970 +0.3 1.8 cyclic nucleotide-binding protein compare
CA265_RS13835 +0.3 1.8 hypothetical protein compare
CA265_RS07260 +0.3 2.3 hypothetical protein compare
CA265_RS10385 +0.3 1.7 hypothetical protein compare
CA265_RS19155 +0.3 2.1 hypothetical protein compare
CA265_RS21065 +0.3 1.1 hypothetical protein compare
CA265_RS04100 +0.3 1.2 uroporphyrinogen-III C-methyltransferase compare
CA265_RS03715 +0.3 0.5 hypothetical protein compare
CA265_RS18805 +0.3 0.6 hypothetical protein compare
CA265_RS22045 +0.3 1.5 hypothetical protein compare
CA265_RS09725 +0.3 2.7 tolB protein precursor compare
CA265_RS16520 +0.3 1.8 sterol desaturase compare
CA265_RS13505 +0.3 1.5 hypothetical protein compare
CA265_RS14015 +0.3 1.0 transcriptional regulator compare
CA265_RS19915 +0.3 1.8 hypothetical protein compare
CA265_RS07445 +0.3 1.7 MarR family transcriptional regulator compare
CA265_RS02065 +0.3 2.1 hypothetical protein compare
CA265_RS13625 +0.3 1.5 hypothetical protein compare
CA265_RS11545 +0.3 1.0 hypothetical protein compare
CA265_RS18775 +0.3 1.7 hypothetical protein compare
CA265_RS24960 +0.3 1.6 hypothetical protein compare
CA265_RS01140 +0.3 1.7 ABC transporter compare
CA265_RS21570 +0.3 1.0 hypothetical protein compare
CA265_RS19055 +0.3 1.9 nitronate monooxygenase compare
CA265_RS17740 +0.3 1.8 DUF983 domain-containing protein compare
CA265_RS23020 +0.3 2.2 hypothetical protein compare
CA265_RS18115 +0.3 2.0 gliding motility protein GldN compare
CA265_RS05135 +0.3 1.4 ferritin compare
CA265_RS20040 +0.3 1.7 GNAT family N-acetyltransferase compare
CA265_RS03210 +0.3 1.6 hypothetical protein compare
CA265_RS25120 +0.3 1.6 aminopeptidase compare
CA265_RS15200 +0.3 0.9 hypothetical protein compare
CA265_RS19965 +0.3 1.1 hypothetical protein compare
CA265_RS22455 +0.3 1.5 hypothetical protein compare
CA265_RS04645 +0.3 1.6 cation transporter compare
CA265_RS14375 +0.3 1.1 hypothetical protein compare
CA265_RS00180 +0.3 1.8 hypothetical protein compare
CA265_RS19680 +0.3 1.6 DNA-binding transcriptional regulator OxyR compare
CA265_RS23915 +0.3 1.1 G-D-S-L family lipolytic protein compare
CA265_RS20280 +0.3 1.1 DoxX family protein compare
CA265_RS21360 +0.3 0.6 hypothetical protein compare
CA265_RS18185 +0.3 1.1 heme oxygenase compare
CA265_RS08820 +0.3 1.9 hypothetical protein compare
CA265_RS22115 +0.3 1.7 hypothetical protein compare
CA265_RS16630 +0.3 1.6 hypothetical protein compare
CA265_RS21255 +0.3 1.9 hypothetical protein compare
CA265_RS17910 +0.3 1.6 glycoside hydrolase compare
CA265_RS24805 +0.3 1.6 hypothetical protein compare
CA265_RS10085 +0.3 2.0 hypothetical protein compare
CA265_RS24195 +0.3 2.0 TetR family transcriptional regulator compare
CA265_RS18780 +0.3 0.8 YicC family protein compare
CA265_RS23865 +0.3 1.8 DNA mismatch repair protein MutS compare
CA265_RS19390 +0.3 1.6 UDP-2,3-diacylglucosamine hydrolase compare
CA265_RS02175 +0.3 1.4 hypothetical protein compare
CA265_RS22365 +0.3 1.2 DNA-binding response regulator compare
CA265_RS19150 +0.3 1.7 amidophosphoribosyltransferase compare
CA265_RS08315 +0.3 0.5 tRNA-Lys compare
CA265_RS11170 +0.3 1.6 hypothetical protein compare
CA265_RS08825 +0.3 1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CA265_RS19485 +0.3 1.3 hypothetical protein compare
CA265_RS20300 +0.3 1.1 hypothetical protein compare
CA265_RS12600 +0.3 0.8 hypothetical protein compare
CA265_RS16195 +0.3 1.2 hypothetical protein compare
CA265_RS11940 +0.3 0.8 hypothetical protein compare
CA265_RS23235 +0.3 0.8 transcriptional regulator compare
CA265_RS17460 +0.3 1.0 RNA polymerase sigma-70 factor compare
CA265_RS23685 +0.3 1.4 hypothetical protein compare
CA265_RS03150 +0.3 1.4 flavin reductase compare
CA265_RS21035 +0.3 1.7 3-oxoacyl-ACP synthase compare
CA265_RS02370 +0.3 1.8 AraC family transcriptional regulator compare
CA265_RS22965 +0.3 1.2 leucyl/phenylalanyl-tRNA--protein transferase compare
CA265_RS23670 +0.3 1.4 cyclic nucleotide-binding protein compare
CA265_RS14680 +0.3 1.5 hypothetical protein compare
CA265_RS03020 +0.2 1.4 outer membrane chaperone Skp compare
CA265_RS25200 +0.2 1.5 hypothetical protein compare
CA265_RS07605 +0.2 1.7 isopentenyl-diphosphate delta-isomerase compare
CA265_RS19600 +0.2 1.7 hypothetical protein compare
CA265_RS15550 +0.2 1.2 hypothetical protein compare
CA265_RS09250 +0.2 1.8 NAD-dependent protein deacylase compare
CA265_RS19645 +0.2 1.2 GNAT family N-acetyltransferase compare
CA265_RS04365 +0.2 1.0 hypothetical protein compare
CA265_RS12385 +0.2 1.8 hypothetical protein compare
CA265_RS00450 +0.2 1.5 flavodoxin compare
CA265_RS02295 +0.2 0.9 metal-binding protein compare
CA265_RS18120 +0.2 1.8 gliding motility protein GldM compare
CA265_RS19650 +0.2 1.3 DNA-3-methyladenine glycosylase compare
CA265_RS17085 +0.2 1.3 hypothetical protein compare
CA265_RS09155 +0.2 1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress benzoic acid across organisms