Experiment set2IT027 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2

200 most important genes:

  gene name fitness t score description  
MMJJ_RS08625 -4.6 -5.5 magnesium/cobalt transporter CorA compare
MMJJ_RS03615 -4.3 -3.0 cobalt-precorrin-8 methylmutase compare
MMJJ_RS05995 -4.3 -2.9 ATP-binding cassette domain-containing protein compare
MMJJ_RS00275 -4.2 -2.8 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06485 -4.1 -2.8 phosphoglycerate kinase compare
MMJJ_RS06695 -4.0 -4.7 amidohydrolase compare
MMJJ_RS00580 -3.9 -3.3 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS05650 -3.9 -3.7 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS03270 -3.9 -3.5 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS03190 -3.8 -3.6 phosphopyruvate hydratase compare
MMJJ_RS03670 -3.8 -4.4 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03055 -3.6 -4.6 hypothetical protein compare
MMJJ_RS04685 -3.5 -11.7 carbamoyltransferase HypF compare
MMJJ_RS05950 -3.5 -4.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS02040 -3.4 -4.0 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS04700 -3.3 -8.4 deoxyhypusine synthase compare
MMJJ_RS06510 -3.3 -4.5 LL-diaminopimelate aminotransferase compare
MMJJ_RS07470 -3.3 -3.8 50S ribosome-binding GTPase compare
MMJJ_RS01935 -3.2 -5.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06625 -3.2 -3.0 pyruvate synthase subunit PorB compare
MMJJ_RS06490 -3.2 -3.7 methanogenesis marker 2 protein compare
MMJJ_RS01870 -3.2 -3.4 methanogenesis marker 15 protein compare
MMJJ_RS05535 -3.1 -16.5 hypothetical protein compare
MMJJ_RS07350 -3.1 -5.4 4Fe-4S binding protein compare
MMJJ_RS06255 -3.1 -8.3 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS01810 -3.1 -3.0 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS01350 -3.1 -7.8 sodium:proton antiporter compare
MMJJ_RS03760 -3.1 -4.5 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS04200 -3.0 -8.1 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06390 -3.0 -2.9 NADPH-dependent F420 reductase compare
MMJJ_RS05935 -3.0 -3.5 Era-like GTP-binding protein compare
MMJJ_RS00270 -3.0 -3.9 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS06270 -3.0 -11.6 dethiobiotin synthase compare
MMJJ_RS00205 -2.9 -7.5 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS02920 -2.9 -3.8 30S ribosomal protein S27ae compare
MMJJ_RS03110 -2.9 -5.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08330 -2.9 -3.9 SufD family Fe-S cluster assembly protein compare
MMJJ_RS03895 -2.9 -5.3 hydrogenase expression/formation protein HypE compare
MMJJ_RS06855 -2.8 -2.8 DUF2104 domain-containing protein compare
MMJJ_RS01600 -2.8 -3.9 radical SAM protein compare
MMJJ_RS00645 -2.8 -13.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS05260 -2.8 -6.6 ATP-grasp domain-containing protein compare
MMJJ_RS08095 -2.8 -5.2 cobyric acid synthase CobQ compare
MMJJ_RS09190 -2.8 -2.4 tryptophan synthase subunit beta compare
MMJJ_RS00570 -2.7 -3.0 ribonuclease P compare
MMJJ_RS08660 -2.7 -4.4 acetylornithine transaminase compare
MMJJ_RS06040 -2.7 -5.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08080 -2.7 -13.0 TIGR00300 family protein compare
MMJJ_RS06180 -2.7 -4.0 tryptophan--tRNA ligase compare
MMJJ_RS01755 -2.7 -3.6 ferrous iron transport protein B compare
MMJJ_RS00600 -2.7 -4.7 hydroxymethylbilane synthase compare
MMJJ_RS03095 -2.7 -3.9 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS06840 -2.7 -4.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06155 -2.6 -7.2 phosphatidylglycerophosphatase A compare
MMJJ_RS00450 -2.6 -3.0 DUF126 domain-containing protein compare
MMJJ_RS07980 -2.6 -12.9 biotin synthase BioB compare
MMJJ_RS05070 -2.6 -3.4 DNA primase catalytic subunit PriS compare
MMJJ_RS03865 -2.6 -3.8 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS05620 -2.6 -5.4 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05380 -2.6 -2.3 hypothetical protein compare
MMJJ_RS07950 -2.6 -4.4 4Fe-4S binding protein compare
MMJJ_RS05155 -2.6 -6.7 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS03620 -2.6 -6.5 DUF2097 domain-containing protein compare
MMJJ_RS03200 -2.6 -4.1 uroporphyrinogen-III synthase compare
MMJJ_RS02200 -2.6 -11.5 chorismate pyruvate-lyase family protein compare
MMJJ_RS07720 -2.5 -4.1 UPF0058 family protein compare
MMJJ_RS06760 -2.5 -5.8 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS03005 -2.5 -4.3 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS08535 -2.5 -4.3 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04150 -2.5 -4.0 DUF5379 domain-containing protein compare
MMJJ_RS07455 -2.5 -7.0 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS03840 -2.4 -4.9 DHH family phosphoesterase compare
MMJJ_RS05930 -2.4 -2.2 cell division protein SepF compare
MMJJ_RS05590 -2.4 -2.7 homoserine dehydrogenase compare
MMJJ_RS08055 -2.4 -7.5 methanogenesis marker 14 protein compare
MMJJ_RS04485 -2.4 -8.9 riboflavin synthase compare
MMJJ_RS03580 -2.4 -4.0 TIGR00303 family protein compare
MMJJ_RS02275 -2.4 -5.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05810 -2.4 -7.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS01750 -2.4 -2.7 ferrous iron transport protein A compare
MMJJ_RS04145 -2.4 -8.6 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS07360 -2.4 -2.3 TIGR00269 family protein compare
MMJJ_RS00370 -2.3 -3.2 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS04475 -2.3 -6.8 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS07785 -2.3 -3.0 fumarate reductase subunit A compare
MMJJ_RS04595 -2.3 -5.8 hypothetical protein compare
MMJJ_RS07725 -2.3 -6.5 DNA primase DnaG compare
MMJJ_RS03820 -2.3 -3.9 hydrogenase formation protein HypD compare
MMJJ_RS04980 -2.2 -5.1 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07015 -2.2 -2.2 PFL family protein compare
MMJJ_RS06805 -2.2 -3.8 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS00560 -2.2 -5.1 homoisocitrate dehydrogenase compare
MMJJ_RS05330 -2.2 -2.9 DNA polymerase II large subunit compare
MMJJ_RS06175 -2.2 -3.2 DUF1743 domain-containing protein compare
MMJJ_RS07945 -2.2 -3.1 4Fe-4S binding protein compare
MMJJ_RS06260 -2.2 -8.8 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS03170 -2.2 -7.9 DUF5612 domain-containing protein compare
MMJJ_RS08870 -2.2 -2.4 2-isopropylmalate synthase compare
MMJJ_RS08155 -2.2 -5.5 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS02090 -2.2 -6.5 tyramine--L-glutamate ligase compare
MMJJ_RS00125 -2.1 -3.4 KEOPS complex subunit Cgi121 compare
MMJJ_RS06110 -2.1 -2.4 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS08010 -2.1 -9.4 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS03150 -2.1 -6.6 2-phospho-L-lactate transferase compare
MMJJ_RS03965 -2.1 -2.8 DNA-directed RNA polymerase subunit L compare
MMJJ_RS00475 -2.1 -3.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS03650 -2.1 -8.3 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS06250 -2.1 -3.0 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS04155 -2.1 -7.4 hypothetical protein compare
MMJJ_RS06750 -2.1 -2.3 homoaconitase large subunit compare
MMJJ_RS08840 -2.1 -4.8 calcium/sodium antiporter compare
MMJJ_RS04520 -2.1 -5.7 coenzyme F430 synthase compare
MMJJ_RS01880 -2.0 -3.6 RlmE family RNA methyltransferase compare
MMJJ_RS07190 -2.0 -4.0 RtcB family protein compare
MMJJ_RS03785 -2.0 -3.4 hypothetical protein compare
MMJJ_RS08320 -2.0 -2.6 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS04730 -2.0 -3.4 tyrosine decarboxylase MfnA compare
MMJJ_RS07705 -2.0 -3.6 GTP-binding protein EngB compare
MMJJ_RS05610 -2.0 -4.8 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS04675 -2.0 -7.4 thiamine pyrophosphate-binding protein compare
MMJJ_RS07415 -2.0 -3.5 polyprenyl diphosphate synthase compare
MMJJ_RS02045 -2.0 -3.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS00210 -2.0 -2.5 DUF530 family protein compare
MMJJ_RS05295 -2.0 -9.6 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS05225 -2.0 -1.3 Gar1/Naf1 family protein compare
MMJJ_RS06265 -2.0 -14.0 8-amino-7-oxononanoate synthase compare
MMJJ_RS05415 -1.9 -2.7 hypothetical protein compare
MMJJ_RS05575 -1.9 -3.8 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06910 -1.9 -4.0 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03115 -1.9 -7.0 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS01360 -1.9 -2.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS07375 -1.9 -10.0 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS06220 -1.9 -5.5 polyamine aminopropyltransferase compare
MMJJ_RS08850 -1.9 -2.8 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS09135 -1.9 -8.5 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06600 -1.9 -3.6 DUF555 domain-containing protein compare
MMJJ_RS03815 -1.9 -2.0 nascent polypeptide-associated complex protein compare
MMJJ_RS05720 -1.8 -2.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS04565 -1.8 -3.7 sirohydrochlorin nickelochelatase compare
MMJJ_RS07170 -1.8 -4.9 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS01415 -1.8 -2.4 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS02035 -1.8 -6.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS07430 -1.8 -3.8 ribonuclease VapC compare
MMJJ_RS04800 -1.8 -6.6 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS07155 -1.8 -9.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS07160 -1.8 -14.3 M20 family metallo-hydrolase compare
MMJJ_RS06375 -1.8 -4.2 UbiX family flavin prenyltransferase compare
MMJJ_RS08620 -1.8 -3.0 DUF373 family protein compare
MMJJ_RS05445 -1.8 -1.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07345 -1.8 -5.6 homocysteine biosynthesis protein compare
MMJJ_RS06715 -1.8 -10.8 lactaldehyde dehydrogenase compare
MMJJ_RS01345 -1.8 -5.3 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS03060 -1.8 -2.5 methanogenesis marker 7 protein compare
MMJJ_RS03845 -1.7 -4.1 translation initiation factor IF-2 compare
MMJJ_RS03125 -1.7 -3.1 GMC oxidoreductase compare
MMJJ_RS07715 -1.7 -2.3 UbiD family decarboxylase compare
MMJJ_RS06185 -1.7 -3.6 cobalamin biosynthesis protein compare
MMJJ_RS04790 -1.7 -4.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS08020 -1.7 -9.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08035 -1.7 -6.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS07245 -1.7 -4.6 amidohydrolase family protein compare
MMJJ_RS03230 -1.7 -3.9 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS04655 -1.7 -5.2 FAD-dependent oxidoreductase compare
MMJJ_RS03660 -1.6 -3.8 DUF447 family protein compare
MMJJ_RS04670 -1.6 -4.0 DUF2117 domain-containing protein compare
MMJJ_RS03295 -1.6 -10.8 PHP domain-containing protein compare
MMJJ_RS03875 -1.6 -3.4 CBS domain-containing protein compare
MMJJ_RS04985 -1.6 -3.2 glutamyl-tRNA reductase compare
MMJJ_RS05490 -1.6 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS04995 -1.6 -4.6 Tfx family DNA-binding protein compare
MMJJ_RS04650 -1.6 -4.7 nitrogenase iron protein compare
MMJJ_RS06865 -1.6 -2.3 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01875 -1.6 -5.8 global nitrogen regulator NrpR compare
MMJJ_RS02855 -1.6 -6.7 DEAD/DEAH box helicase compare
MMJJ_RS01830 -1.6 -3.5 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06215 -1.6 -3.7 agmatinase compare
MMJJ_RS06700 -1.6 -4.9 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS05655 -1.5 -4.7 HisA/HisF family protein compare
MMJJ_RS03540 -1.5 -7.4 TIGR00289 family protein compare
MMJJ_RS04770 -1.5 -3.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
MMJJ_RS04975 -1.5 -2.1 glycosyltransferase family 4 protein compare
MMJJ_RS08925 -1.5 -9.8 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS01200 -1.5 -2.6 PRC-barrel domain-containing protein compare
MMJJ_RS05065 -1.5 -3.5 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00360 -1.4 -2.6 adenosylhomocysteinase compare
MMJJ_RS04680 -1.4 -8.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS05375 -1.4 -9.3 radical SAM protein compare
MMJJ_RS09375 -1.4 -2.2 hypothetical protein compare
MMJJ_RS08340 -1.4 -4.3 archaeoflavoprotein AfpA compare
MMJJ_RS05595 -1.4 -2.8 hypothetical protein compare
MMJJ_RS03920 -1.4 -10.7 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS07370 -1.4 -3.4 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS06000 -1.4 -5.3 cation:proton antiporter subunit C compare
MMJJ_RS01355 -1.4 -2.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS03490 -1.4 -2.2 ribonuclease VapC compare
MMJJ_RS06725 -1.4 -9.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06035 -1.3 -7.6 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS00355 -1.3 -1.9 ribonuclease P protein component 4 compare
MMJJ_RS06875 -1.3 -2.2 hypothetical protein compare
MMJJ_RS07410 -1.3 -3.9 methanogenesis marker protein Mmp4/MtxX compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t1 experiments