LB with Paraquat dichloride 0.01 mg/ml
Group:
stress
Media:
LB +
Paraquat dichloride (0.01 mg/ml)
Culturing: acidovorax_3H11_ML3a, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on
5/11/2015
Media components: 10 g/L
Tryptone, 5 g/L
Yeast Extract, 5 g/L
Sodium Chloride
Specific Phenotypes
For 4 genes in this experiment
For stress Paraquat dichloride in Acidovorax sp. GW101-3H11
For stress Paraquat dichloride across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|
| putrescine degradation I | 2 | 1 | 1 |
| ethylene glycol degradation | 2 | 1 | 1 |
| putrescine degradation V | 2 | 1 | 1 |
| ethanol degradation II | 3 | 3 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| putrescine degradation IV | 3 | 2 | 1 |
| hypotaurine degradation | 3 | 2 | 1 |
| ethanol degradation III | 3 | 2 | 1 |
| histamine degradation | 3 | 1 | 1 |
| resorcinol degradation | 3 | 1 | 1 |
| phytol degradation | 4 | 3 | 1 |
| fatty acid α-oxidation I (plants) | 4 | 2 | 1 |
| 4-sulfocatechol degradation | 4 | 2 | 1 |
| γ-resorcylate degradation I | 4 | 1 | 1 |
| L-tryptophan degradation X (mammalian, via tryptamine) | 4 | 1 | 1 |
| γ-resorcylate degradation II | 4 | 1 | 1 |
| putrescine degradation III | 4 | 1 | 1 |
| D-arabinose degradation II | 4 | 1 | 1 |
| 4-aminophenol degradation | 4 | 1 | 1 |
| octane oxidation | 5 | 3 | 1 |
| 4-chlorocatechol degradation | 5 | 3 | 1 |
| sphingosine and sphingosine-1-phosphate metabolism | 10 | 4 | 2 |
| mitochondrial NADPH production (yeast) | 5 | 2 | 1 |
| 3-chlorocatechol degradation II (ortho) | 5 | 2 | 1 |
| 3-chlorocatechol degradation I (ortho) | 5 | 2 | 1 |
| dopamine degradation | 5 | 1 | 1 |
| 4-hydroxyacetophenone degradation | 5 | 1 | 1 |
| 4-nitrophenol degradation II | 5 | 1 | 1 |
| 4-nitrophenol degradation I | 5 | 1 | 1 |
| 3-methyl-branched fatty acid α-oxidation | 6 | 3 | 1 |
| alkane oxidation | 6 | 1 | 1 |
| noradrenaline and adrenaline degradation | 13 | 4 | 2 |
| superpathway of glycol metabolism and degradation | 7 | 5 | 1 |
| 4,5-dichlorocatechol degradation | 7 | 4 | 1 |
| serotonin degradation | 7 | 3 | 1 |
| chlorosalicylate degradation | 7 | 3 | 1 |
| 2,4,6-trichlorophenol degradation | 7 | 3 | 1 |
| ceramide degradation by α-oxidation | 7 | 2 | 1 |
| limonene degradation IV (anaerobic) | 7 | 1 | 1 |
| superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) | 8 | 4 | 1 |
| 3,5-dichlorocatechol degradation | 8 | 4 | 1 |
| superpathway of ornithine degradation | 8 | 3 | 1 |
| ceramide and sphingolipid recycling and degradation (yeast) | 16 | 4 | 2 |
| aromatic biogenic amine degradation (bacteria) | 8 | 1 | 1 |
| 3,4,6-trichlorocatechol degradation | 9 | 5 | 1 |
| 1,4-dichlorobenzene degradation | 9 | 4 | 1 |
| Entner-Doudoroff pathway II (non-phosphorylative) | 9 | 4 | 1 |
| 2,4,5-trichlorophenoxyacetate degradation | 9 | 3 | 1 |
| pentachlorophenol degradation | 10 | 4 | 1 |
| pinoresinol degradation | 10 | 2 | 1 |
| γ-hexachlorocyclohexane degradation | 11 | 6 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 4 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 6 | 1 |
| superpathway of pentose and pentitol degradation | 42 | 14 | 1 |