Experiment set2IT026 for Bifidobacterium breve UCC2003

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CDM1 without Phenylalanine

Group: nutrient dropout
Media: CDM1 + no Phenylalanine, pH=7
Culturing: Bifido_ML2, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Anthony Shiver on 12/9/2019
Growth plate: CDM1_nutrientdrop C2

Specific Phenotypes

For 11 genes in this experiment

For nutrient dropout no Phenylalanine in Bifidobacterium breve UCC2003

For nutrient dropout no Phenylalanine across organisms

SEED Subsystems

Subsystem #Specific
Chorismate Synthesis 2
Arginine and Ornithine Degradation 1
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate) 1
DNA-replication 1
Glutamate dehydrogenases 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Heat shock dnaK gene cluster extended 1
Phenylalanine and Tyrosine Branches from Chorismate 1
Proline Synthesis 1
Transcription factors bacterial 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-glutamate biosynthesis III 1 1 1
3-dehydroquinate biosynthesis I 2 2 1
L-phenylalanine biosynthesis III (cytosolic, plants) 2 2 1
L-phenylalanine biosynthesis I 3 3 1
superpathway of L-phenylalanine biosynthesis 10 10 2
chorismate biosynthesis I 7 7 1
L-glutamate and L-glutamine biosynthesis 7 5 1
superpathway of aromatic amino acid biosynthesis 18 18 2
superpathway of L-tyrosine biosynthesis 10 10 1
superpathway of L-tryptophan biosynthesis 13 13 1
superpathway of chorismate metabolism 59 32 2