Experiment set2IT024 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Aspartic Acid carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -3.3 -2.3 3-isopropylmalate dehydratase compare
AO353_07230 -3.2 -9.1 anthranilate synthase compare
AO353_12090 -3.2 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20665 -3.1 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_05115 -3.1 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12085 -3.0 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_09950 -3.0 -4.1 aspartate ammonia-lyase compare
AO353_09945 -2.9 -3.5 LysR family transcriptional regulator compare
AO353_08345 -2.9 -5.8 dihydroxy-acid dehydratase compare
AO353_05110 -2.8 -7.1 histidinol dehydrogenase compare
AO353_12070 -2.8 -5.4 imidazoleglycerol-phosphate dehydratase compare
AO353_20635 -2.8 -7.9 3-isopropylmalate dehydrogenase compare
AO353_16290 -2.8 -8.6 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) compare
AO353_13070 -2.8 -6.5 phosphoserine phosphatase compare
AO353_07155 -2.7 -3.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_20695 -2.7 -4.8 O-succinylhomoserine sulfhydrylase compare
AO353_25845 -2.7 -3.1 GNAT family acetyltransferase compare
AO353_07215 -2.7 -4.8 anthranilate phosphoribosyltransferase compare
AO353_08685 -2.7 -5.9 N-acetylglutamate synthase compare
AO353_02250 -2.6 -2.5 chorismate synthase compare
AO353_07210 -2.6 -4.3 indole-3-glycerol-phosphate synthase compare
AO353_27000 -2.6 -2.5 hypothetical protein compare
AO353_12365 -2.6 -3.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_13165 -2.6 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
AO353_26530 -2.5 -5.7 hypothetical protein compare
AO353_08180 -2.5 -9.3 homoserine O-acetyltransferase compare
AO353_14400 -2.5 -2.4 Fis family transcriptional regulator compare
AO353_02075 -2.5 -7.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_07220 -2.4 -5.7 anthranilate synthase compare
AO353_15900 -2.4 -2.8 GTP-binding protein compare
AO353_10710 -2.4 -2.8 tryptophan synthase subunit beta compare
AO353_10670 -2.4 -5.4 shikimate dehydrogenase compare
AO353_16270 -2.4 -11.4 histidine kinase compare
AO353_24130 -2.3 -2.7 hypothetical protein compare
AO353_15925 -2.3 -9.4 2-isopropylmalate synthase compare
AO353_09240 -2.3 -1.6 acetylglutamate kinase compare
AO353_16280 -2.3 -5.5 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 (from data) compare
AO353_14505 -2.3 -8.3 ketol-acid reductoisomerase compare
AO353_02070 -2.3 -5.6 prephenate dehydratase compare
AO353_02300 -2.2 -2.6 MarR family transcriptional regulator compare
AO353_08185 -2.2 -7.4 methionine biosynthesis protein MetW compare
AO353_14115 -2.2 -4.9 gamma-glutamyl kinase compare
AO353_20620 -2.2 -5.0 isopropylmalate isomerase compare
AO353_16285 -2.2 -6.2 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) conserved
AO353_20175 -2.2 -2.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_14495 -2.1 -6.6 acetolactate synthase 3 catalytic subunit compare
AO353_04155 -2.1 -8.2 ornithine carbamoyltransferase compare
AO353_04105 -2.1 -5.5 argininosuccinate synthase compare
AO353_20590 -2.1 -2.4 hydrolase compare
AO353_22025 -2.1 -2.8 iron-sulfur cluster repair di-iron protein compare
AO353_08645 -2.1 -3.1 transporter compare
AO353_12075 -2.1 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14370 -2.0 -4.7 glucose-6-phosphate isomerase compare
AO353_06495 -2.0 -4.1 gamma-glutamyl phosphate reductase compare
AO353_08015 -2.0 -4.5 5,10-methylenetetrahydrofolate reductase compare
AO353_08165 -2.0 -1.9 pyrroline-5-carboxylate reductase compare
AO353_08475 -1.9 -6.3 phosphoserine phosphatase compare
AO353_14500 -1.9 -4.2 acetolactate synthase 3 regulatory subunit compare
AO353_16265 -1.9 -4.7 Fis family transcriptional regulator compare
AO353_12500 -1.9 -1.3 shikimate kinase compare
AO353_00430 -1.8 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12345 -1.8 -2.1 twin-arginine protein translocation system subunit TatC compare
AO353_02465 -1.8 -2.0 hypothetical protein compare
AO353_09000 -1.8 -3.4 argininosuccinate lyase compare
AO353_18505 -1.8 -2.0 translation initiation factor 2 compare
AO353_05075 -1.8 -6.9 adenylylsulfate kinase compare
AO353_19060 -1.8 -3.7 CysB family transcriptional regulator compare
AO353_05800 -1.8 -3.5 hypothetical protein compare
AO353_10950 -1.8 -7.1 thiol:disulfide interchange protein compare
AO353_03615 -1.7 -1.7 cold-shock protein compare
AO353_08510 -1.7 -3.6 3-phosphoglycerate dehydrogenase compare
AO353_12935 -1.7 -2.3 glycosyltransferase compare
AO353_27090 -1.7 -2.2 hypothetical protein compare
AO353_26055 -1.7 -2.2 hypothetical protein compare
AO353_18540 -1.6 -2.2 pseudouridine synthase compare
AO353_01975 -1.6 -5.3 glycosyl transferase compare
AO353_23620 -1.6 -2.5 hypothetical protein compare
AO353_10445 -1.6 -1.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_21640 -1.6 -1.8 cobalt transporter compare
AO353_12115 -1.5 -1.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12360 -1.5 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_09265 -1.5 -2.1 hypothetical protein compare
AO353_01080 -1.5 -6.3 hypothetical protein compare
AO353_11780 -1.5 -2.7 hypothetical protein compare
AO353_27335 -1.5 -2.4 hypothetical protein compare
AO353_02885 -1.5 -2.0 flagellar biosynthesis protein FlgN compare
AO353_20540 -1.5 -5.0 aromatic amino acid aminotransferase compare
AO353_10705 -1.5 -2.8 tryptophan synthase subunit alpha compare
AO353_20800 -1.5 -1.7 hypothetical protein compare
AO353_10780 -1.5 -1.4 DNA-binding protein compare
AO353_03670 -1.5 -3.7 ornithine acetyltransferase compare
AO353_00195 -1.4 -1.9 virion morphogenesis protein compare
AO353_26115 -1.4 -1.3 hypothetical protein compare
AO353_00835 -1.4 -4.4 transporter compare
AO353_24440 -1.4 -2.0 reactive intermediate/imine deaminase compare
AO353_05080 -1.4 -6.7 sulfate adenylyltransferase compare
AO353_11775 -1.4 -4.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_14930 -1.4 -2.4 GntR family transcriptional regulator compare
AO353_04220 -1.4 -4.2 chemotaxis protein CheY compare
AO353_19280 -1.4 -1.4 hypothetical protein compare
AO353_23495 -1.4 -2.0 SAM-dependent methyltransferase compare
AO353_11940 -1.3 -2.2 hypothetical protein compare
AO353_16530 -1.3 -1.1 ribonuclease HII compare
AO353_12690 -1.3 -1.0 acyl carrier protein compare
AO353_00825 -1.3 -2.2 porin compare
AO353_12460 -1.3 -4.9 malate dehydrogenase compare
AO353_16835 -1.3 -1.9 LuxR family transcriptional regulator compare
AO353_06415 -1.3 -2.8 hypothetical protein compare
AO353_06040 -1.3 -2.3 exodeoxyribonuclease V subunit alpha compare
AO353_15445 -1.3 -2.4 disulfide bond formation protein B compare
AO353_00750 -1.3 -2.7 GntR family transcriptional regulator compare
AO353_11920 -1.3 -2.2 hypothetical protein compare
AO353_07290 -1.3 -5.8 mannose-1-phosphate guanylyltransferase compare
AO353_14220 -1.3 -1.2 ribosomal large subunit pseudouridine synthase D compare
AO353_05010 -1.3 -1.5 HopJ type III effector protein compare
AO353_03580 -1.3 -2.5 ATP-dependent DNA helicase RuvB compare
AO353_16765 -1.3 -1.8 hypothetical protein compare
AO353_13610 -1.3 -3.0 precorrin isomerase compare
AO353_24275 -1.3 -1.5 transcriptional regulator compare
AO353_13140 -1.2 -3.0 tRNA dimethylallyltransferase compare
AO353_03590 -1.2 -2.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_21990 -1.2 -2.4 cytochrome C compare
AO353_21495 -1.2 -2.9 short-chain dehydrogenase compare
AO353_04355 -1.2 -1.4 homoserine dehydrogenase compare
AO353_01550 -1.2 -3.5 hypothetical protein compare
AO353_08980 -1.2 -1.8 heme biosynthesis operon protein HemX compare
AO353_19360 -1.2 -1.7 peroxiredoxin compare
AO353_14405 -1.2 -6.7 ATPase compare
AO353_20185 -1.2 -3.9 DNA-binding protein compare
AO353_07460 -1.2 -2.0 DNA-binding protein compare
AO353_04520 -1.2 -2.9 elongation factor 4 compare
AO353_17250 -1.1 -2.3 nitrile hydratase compare
AO353_06045 -1.1 -3.8 exodeoxyribonuclease V subunit beta compare
AO353_22415 -1.1 -2.3 alcohol dehydrogenase compare
AO353_01915 -1.1 -1.3 GlcG protein compare
AO353_16740 -1.1 -2.4 phage tail protein compare
AO353_09890 -1.1 -3.1 phosphate ABC transporter ATP-binding protein compare
AO353_15595 -1.1 -2.5 hypothetical protein compare
AO353_17965 -1.1 -2.5 hypothetical protein compare
AO353_03275 -1.1 -1.8 LysR family transcriptional regulator compare
AO353_02640 -1.1 -1.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_23450 -1.1 -1.9 LysR family transcriptional regulator compare
AO353_11165 -1.1 -5.1 hypothetical protein compare
AO353_16440 -1.1 -2.0 ArsC family transcriptional regulator compare
AO353_06480 -1.1 -1.4 50S rRNA methyltransferase compare
AO353_26755 -1.1 -2.5 hypothetical protein compare
AO353_01350 -1.0 -3.6 4-amino-4-deoxychorismate lyase compare
AO353_08470 -1.0 -2.5 RNA pyrophosphohydrolase compare
AO353_27695 -1.0 -4.4 isocitrate dehydrogenase compare
AO353_16345 -1.0 -1.6 energy transducer TonB compare
AO353_10455 -1.0 -1.1 tRNA modification GTPase MnmE compare
AO353_10320 -1.0 -1.3 hypothetical protein compare
AO353_15905 -1.0 -3.2 outer membrane protein assembly factor BamB compare
AO353_02220 -1.0 -0.9 hypothetical protein compare
AO353_26945 -1.0 -1.5 transcriptional regulator compare
AO353_03630 -1.0 -5.5 porin compare
AO353_28910 -1.0 -2.1 hypothetical protein compare
AO353_02005 -1.0 -0.8 hypothetical protein compare
AO353_19000 -1.0 -1.8 ABC transporter compare
AO353_15250 -1.0 -1.9 cytochrome B compare
AO353_06050 -0.9 -3.0 exodeoxyribonuclease V subunit gamma compare
AO353_26450 -0.9 -2.4 hypothetical protein compare
AO353_02590 -0.9 -2.0 MarR family transcriptional regulator compare
AO353_27415 -0.9 -1.3 hypothetical protein compare
AO353_28960 -0.9 -2.0 Fis family transcriptional regulator compare
AO353_18780 -0.9 -3.3 cobyrinic acid a,c-diamide synthase compare
AO353_09700 -0.9 -3.1 hypothetical protein compare
AO353_29280 -0.9 -1.7 hypothetical protein compare
AO353_12930 -0.9 -2.1 GlcNAc-PI de-N-acetylase compare
AO353_24745 -0.9 -1.3 hypothetical protein compare
AO353_27995 -0.9 -2.2 RpiR family transcriptional regulator compare
AO353_03795 -0.9 -2.3 fumarate hydratase compare
AO353_20265 -0.9 -1.6 spore coat protein compare
AO353_25925 -0.9 -1.5 hypothetical protein compare
AO353_06550 -0.9 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO353_06100 -0.9 -1.3 thymidylate synthase compare
AO353_00325 -0.9 -2.6 pilus assembly protein compare
AO353_18715 -0.9 -1.1 histidine kinase compare
AO353_09720 -0.9 -1.0 hypothetical protein compare
AO353_13155 -0.9 -2.0 hypothetical protein compare
AO353_28330 -0.9 -2.4 carbon-nitrogen hydrolase compare
AO353_01355 -0.9 -3.3 3-oxoacyl-ACP synthase compare
AO353_07255 -0.9 -6.0 polyamine ABC transporter substrate-binding protein compare
AO353_24370 -0.9 -2.4 thioredoxin compare
AO353_07315 -0.9 -1.1 rRNA methyltransferase compare
AO353_03025 -0.8 -2.9 acetylornithine aminotransferase compare
AO353_01035 -0.8 -1.5 hypothetical protein compare
AO353_21735 -0.8 -2.4 IclR family transcriptional regulator compare
AO353_08995 -0.8 -4.7 chemotaxis protein CheY compare
AO353_24255 -0.8 -1.7 hypothetical protein compare
AO353_28425 -0.8 -1.9 TetR family transcriptional regulator compare
AO353_09150 -0.8 -1.8 cytochrome C2 compare
AO353_20370 -0.8 -1.8 MerR family transcriptional regulator compare
AO353_26180 -0.8 -2.1 phage tail protein compare
AO353_20065 -0.8 -2.5 hypothetical protein compare
AO353_26080 -0.8 -1.0 hypothetical protein compare
AO353_01410 -0.8 -1.7 ribonuclease E compare
AO353_02270 -0.8 -2.4 isochorismatase compare
AO353_08780 -0.8 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_20585 -0.8 -2.0 TetR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Aspartic Acid in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Aspartic Acid across organisms