Experiment set2IT024 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Aspartic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_24340 +2.8 7.9 TetR family transcriptional regulator compare
AO353_02735 +2.0 17.9 chemotaxis protein CheY compare
AO353_09060 +2.0 5.5 hypothetical protein compare
AO353_21830 +2.0 17.0 chemotaxis protein CheY compare
AO353_26520 +1.8 6.1 TetR family transcriptional regulator compare
AO353_12580 +1.7 4.4 type II secretory protein PulK compare
AO353_16615 +1.4 11.0 RNA polymerase sigma factor RpoS compare
AO353_03515 +1.3 2.8 cold-shock protein compare
AO353_09745 +1.3 2.3 hypothetical protein compare
AO353_24415 +1.3 2.3 glutamine ABC transporter ATP-binding protein compare
AO353_19020 +1.2 4.0 hypothetical protein compare
AO353_20925 +1.2 3.0 hypothetical protein compare
AO353_26390 +1.2 3.2 glyoxalase compare
AO353_03520 +1.2 3.4 hypothetical protein compare
AO353_19340 +1.1 9.1 amino acid ABC transporter substrate-binding protein compare
AO353_06455 +1.1 3.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_09045 +1.1 1.4 hypothetical protein compare
AO353_19760 +1.1 2.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_26220 +1.0 2.8 hypothetical protein compare
AO353_27710 +1.0 2.0 DNA repair protein compare
AO353_26070 +1.0 2.3 hypothetical protein compare
AO353_22195 +1.0 1.9 metal ABC transporter permease compare
AO353_10510 +1.0 1.8 benzoate transporter compare
AO353_21290 +1.0 2.5 hypothetical protein compare
AO353_00495 +1.0 2.0 DNA topoisomerase I compare
AO353_07105 +1.0 1.7 biotin--protein ligase compare
AO353_16655 +0.9 2.4 phage baseplate protein compare
AO353_04340 +0.9 2.2 hypothetical protein compare
AO353_20270 +0.9 3.0 spore coat protein compare
AO353_04090 +0.9 2.1 leucyl-tRNA synthetase compare
AO353_11155 +0.9 7.2 thioesterase compare
AO353_06365 +0.9 6.9 hypothetical protein compare
AO353_19085 +0.9 2.0 organic hydroperoxide resistance protein compare
AO353_29165 +0.8 2.3 fructose-bisphosphate aldolase compare
AO353_00255 +0.8 2.6 hypothetical protein compare
AO353_06275 +0.8 2.3 DNA polymerase III subunit epsilon compare
AO353_25445 +0.8 2.7 carbonic anhydrase compare
AO353_26125 +0.8 2.3 hypothetical protein compare
AO353_17085 +0.7 1.4 hypothetical protein compare
AO353_12270 +0.7 2.4 histidine ammonia-lyase compare
AO353_11160 +0.7 4.1 GntR family transcriptional regulator compare
AO353_18675 +0.7 3.6 flagellar hook-basal body protein FliE compare
AO353_18335 +0.7 1.8 hypothetical protein compare
AO353_04810 +0.7 0.9 hypothetical protein compare
AO353_09395 +0.7 2.3 type VI secretion protein compare
AO353_20425 +0.7 1.4 ArsC family transcriptional regulator compare
AO353_14420 +0.7 2.3 molecular chaperone DnaK compare
AO353_13920 +0.7 1.9 dihydroxyacetone kinase compare
AO353_12710 +0.7 1.3 thioredoxin compare
AO353_17935 +0.7 1.8 hypothetical protein compare
AO353_26100 +0.7 1.5 lysozyme compare
AO353_20840 +0.7 1.5 ribose pyranase compare
AO353_26625 +0.7 3.0 MBL fold metallo-hydrolase compare
AO353_23440 +0.7 1.5 hypothetical protein compare
AO353_19265 +0.7 2.5 hypothetical protein compare
AO353_13660 +0.7 3.5 tRNA-dihydrouridine synthase B compare
AO353_27500 +0.6 1.3 hypothetical protein compare
AO353_25480 +0.6 3.0 multidrug transporter compare
AO353_09775 +0.6 1.9 hypothetical protein compare
AO353_16350 +0.6 2.1 SAM-dependent methyltransferase compare
AO353_21425 +0.6 2.2 hypothetical protein compare
AO353_08640 +0.6 1.6 hypothetical protein compare
AO353_00235 +0.6 1.5 transcriptional regulator compare
AO353_09875 +0.6 1.2 hypothetical protein compare
AO353_27725 +0.6 1.3 GNAT family acetyltransferase compare
AO353_06530 +0.6 4.7 peptidase C13 compare
AO353_13600 +0.6 1.7 precorrin-6Y C5,15-methyltransferase compare
AO353_04650 +0.6 1.2 molybdenum cofactor biosynthesis protein MoaE compare
AO353_22075 +0.6 1.9 hypothetical protein compare
AO353_01795 +0.6 1.2 hypothetical protein compare
AO353_07615 +0.6 1.9 hypothetical protein compare
AO353_00490 +0.6 1.1 PasA protein compare
AO353_09495 +0.6 2.1 hypothetical protein compare
AO353_09835 +0.6 2.0 rubredoxin compare
AO353_14740 +0.6 1.5 GTP-binding protein compare
AO353_28930 +0.6 1.5 hypothetical protein compare
AO353_13395 +0.6 1.4 protein hupE compare
AO353_15975 +0.6 2.3 GntR family transcriptional regulator compare
AO353_06725 +0.6 1.1 hypothetical protein compare
AO353_20330 +0.6 2.5 Cro/Cl family transcriptional regulator compare
AO353_17705 +0.6 2.5 amino acid transporter compare
AO353_22675 +0.6 2.7 hypothetical protein compare
AO353_08615 +0.6 2.3 hypothetical protein compare
AO353_22960 +0.6 2.4 transcriptional regulator compare
AO353_10630 +0.6 2.2 16S rRNA methyltransferase compare
AO353_14935 +0.6 1.4 aminopeptidase compare
AO353_23410 +0.6 1.2 hypothetical protein compare
AO353_21010 +0.6 2.4 transposase compare
AO353_25220 +0.6 1.3 hypothetical protein compare
AO353_09040 +0.6 0.9 diaminopimelate epimerase compare
AO353_19600 +0.6 2.7 NAD-dependent DNA ligase compare
AO353_00460 +0.6 1.5 TetR family transcriptional regulator compare
AO353_19250 +0.6 1.0 molybdenum cofactor guanylyltransferase compare
AO353_08595 +0.6 3.5 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO353_05625 +0.5 0.9 transcription elongation factor GreA compare
AO353_19765 +0.5 2.5 hypothetical protein compare
AO353_10720 +0.5 2.2 hypothetical protein compare
AO353_01045 +0.5 1.7 phasin compare
AO353_25955 +0.5 1.9 NIPSNAP family containing protein compare
AO353_17615 +0.5 2.3 hypothetical protein compare
AO353_00665 +0.5 1.6 adenine phosphoribosyltransferase compare
AO353_25350 +0.5 2.9 peroxidase compare
AO353_15645 +0.5 1.6 hypothetical protein compare
AO353_12720 +0.5 1.5 hypothetical protein compare
AO353_21690 +0.5 2.6 2,4-dienoyl-CoA reductase compare
AO353_28815 +0.5 1.1 hypothetical protein compare
AO353_23510 +0.5 1.8 transcriptional regulator compare
AO353_24405 +0.5 1.3 ArsR family transcriptional regulator compare
AO353_01715 +0.5 2.5 esterase compare
AO353_05070 +0.5 2.1 acyltransferase compare
AO353_03290 +0.5 1.0 peptide deformylase compare
AO353_11835 +0.5 2.3 LysR family transcriptional regulator compare
AO353_24800 +0.5 2.8 spermidine/putrescine ABC transporter substrate-binding protein compare
AO353_13995 +0.5 2.3 hypothetical protein compare
AO353_14775 +0.5 2.3 hypothetical protein compare
AO353_10270 +0.5 3.2 glycosyl transferase compare
AO353_19045 +0.5 2.8 2-dehydropantoate 2-reductase compare
AO353_21945 +0.5 1.1 protein nirL compare
AO353_17590 +0.5 2.6 transcriptional regulator compare
AO353_07605 +0.5 2.5 acyltransferase compare
AO353_02765 +0.5 1.5 NAD(P)H-quinone oxidoreductase compare
AO353_03250 +0.5 1.0 gluconokinase compare
AO353_08630 +0.5 1.5 hypothetical protein compare
AO353_22645 +0.5 1.1 hypothetical protein compare
AO353_03920 +0.5 1.9 acetyltransferase compare
AO353_28210 +0.5 1.4 2-haloalkanoic acid dehalogenase compare
AO353_18285 +0.5 1.5 3-phosphoglycerate kinase compare
AO353_13085 +0.5 1.5 histidine kinase compare
AO353_28555 +0.5 0.7 LysR family transcriptional regulator compare
AO353_15260 +0.5 2.3 stringent starvation protein A compare
AO353_05240 +0.5 1.0 rod shape-determining protein MreD compare
AO353_07785 +0.5 2.3 ABC transporter for Carnitine, permease component (from data) compare
AO353_12540 +0.5 1.4 hypothetical protein compare
AO353_08765 +0.5 2.0 hypothetical protein compare
AO353_07270 +0.5 1.2 transcriptional regulator compare
AO353_02045 +0.5 2.3 hypothetical protein compare
AO353_17855 +0.5 1.2 ribonuclease D compare
AO353_19685 +0.5 1.3 alkylhydroperoxidase compare
AO353_19740 +0.5 2.2 MFS transporter compare
AO353_25645 +0.5 2.1 amino acid transporter compare
AO353_21935 +0.5 1.0 nitrite reductase compare
AO353_24560 +0.5 1.4 transcriptional regulator compare
AO353_06135 +0.5 1.5 NADPH:quinone reductase compare
AO353_02860 +0.5 1.8 flagellar biosynthesis protein FlgB compare
AO353_01730 +0.5 2.5 lipase compare
AO353_03480 +0.5 2.2 carbamate kinase compare
AO353_16300 +0.5 1.5 hypothetical protein compare
AO353_24175 +0.5 1.4 hypothetical protein compare
AO353_13635 +0.5 2.1 hypothetical protein compare
AO353_11050 +0.5 1.6 hypothetical protein compare
AO353_01145 +0.5 2.2 magnesium transporter compare
AO353_06540 +0.5 0.8 hypothetical protein compare
AO353_00260 +0.5 0.9 hypothetical protein compare
AO353_24400 +0.5 1.7 ACP phosphodiesterase compare
AO353_22015 +0.5 2.0 short-chain dehydrogenase compare
AO353_24480 +0.5 3.2 glutathione reductase compare
AO353_11760 +0.5 2.3 ribosomal protein S6 modification protein compare
AO353_28390 +0.5 1.5 hypothetical protein compare
AO353_11310 +0.5 1.4 aspartyl beta-hydroxylase compare
AO353_12670 +0.5 1.6 glycosyl transferase compare
AO353_23610 +0.5 2.4 serine/threonine protein phosphatase compare
AO353_14030 +0.5 3.5 ABC transporter ATP-binding protein compare
AO353_17870 +0.5 1.6 NADH dehydrogenase compare
AO353_07655 +0.5 2.7 sarcosine oxidase subunit delta compare
AO353_18985 +0.5 1.3 hypothetical protein compare
AO353_21750 +0.5 1.1 peptidylprolyl isomerase compare
AO353_14955 +0.5 1.1 hypothetical protein compare
AO353_00120 +0.5 1.1 DNA-binding protein compare
AO353_21365 +0.5 2.1 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
AO353_00440 +0.5 1.8 hypothetical protein compare
AO353_05740 +0.5 1.7 hypothetical protein compare
AO353_00590 +0.5 1.7 cytochrome C oxidase Cbb3 compare
AO353_23935 +0.5 1.6 hypothetical protein compare
AO353_13440 +0.5 2.6 alpha/beta hydrolase compare
AO353_25430 +0.5 1.8 ABC transporter permease compare
AO353_20865 +0.5 0.9 cold-shock protein compare
AO353_24960 +0.5 2.2 sulfate ABC transporter substrate-binding protein compare
AO353_20245 +0.5 1.5 LysR family transcriptional regulator compare
AO353_02600 +0.5 0.9 alpha-ribazole phosphatase compare
AO353_14035 +0.5 2.4 transcription elongation factor GreAB compare
AO353_19675 +0.5 2.1 hypothetical protein compare
AO353_22780 +0.4 1.8 phosphoglycerate mutase compare
AO353_09250 +0.4 1.1 exodeoxyribonuclease III compare
AO353_05810 +0.4 1.4 dehydrogenase compare
AO353_22930 +0.4 1.0 hypothetical protein compare
AO353_20700 +0.4 1.9 oxidoreductase compare
AO353_21370 +0.4 2.2 protein iolH compare
AO353_25320 +0.4 1.2 phosphoribosyl-dephospho-CoA transferase compare
AO353_04690 +0.4 2.4 hemolysin D compare
AO353_14860 +0.4 1.4 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_26885 +0.4 2.3 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
AO353_09915 +0.4 2.4 long-chain acyl-CoA thioester hydrolase compare
AO353_15745 +0.4 2.0 hypothetical protein compare
AO353_27530 +0.4 1.6 acetyl-CoA acetyltransferase compare
AO353_19025 +0.4 3.3 acetyltransferase compare
AO353_13225 +0.4 1.2 50S ribosomal protein L9 compare
AO353_14015 +0.4 2.4 C4-dicarboxylate ABC transporter compare
AO353_03180 +0.4 2.4 transcriptional regulator compare
AO353_26645 +0.4 1.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_25720 +0.4 1.5 peroxidase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Aspartic Acid in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Aspartic Acid across organisms