Experiment set2IT024 for Acidovorax sp. GW101-3H11
LB with copper (II) chloride dihydrate 1 mM
Quality Metrics:
| Time0 | 5/11/2015 acidovorax_3H11_ML3a_set2 | which Time0s the sample was compared to |
| cor12 | 0.28 | rank correlation(fit1, fit2), where fit1 is fitness for the first half (10-50%) and fit2 is fitness for the second half (50-90%) of each gene |
| maxFit | 3.32 | The maximum fitness value |
| opcor | 0.21 | rank correlation(upstream gene, downstream gene) over pairs that are adjacent and likely to be in the same operon |
| adjcor | -0.01 | like opcor but for adjacent genes that are not on the same strand |
| gccor | 0.03 | linear correlation of gene fitness and gene GC content |
| mad12 | 0.29 | median absolute difference of fit1, fit2 |
| mad12c | 1.15 | median absolute difference of log count for 1st and 2nd half of genes in this sample |
| mad12c_t0 | 1.13 | like mad12c but for the Time0s |
| gMed | 226 | median reads per gene in this sample |
| gMedt0 | 646 | median reads per gene in the Time0 sample |
| gMean | 414 | mean reads per gene in this sample |
| nMapped | 2.735 M | #reads for this sample that corresponded to a known strain (in millions) |
| nPastEnd | 0.004 M | #reads that corresponded to a strain that has an insertion within the suicide vector instead of within the genome. |
| nGenic | 1.648 M | #reads that lie within central 10-90% of a gene |
| nUsed | 1.630 M | #reads used to estimate gene fitness (genic and enough coverage for strain and for gene) |
Specific Phenotypes
For 1 genes in this experiment
For stress copper (II) chloride dihydrate in Acidovorax sp. GW101-3H11