Experiment set2IT023 for Acidovorax sp. GW101-3H11
LB with Cobalt chloride hexahydrate 0.32 mM
Group: stressMedia: LB + Cobalt chloride hexahydrate (0.32 mM)
Culturing: acidovorax_3H11_ML3a, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 5/11/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 3 genes in this experiment
For stress Cobalt chloride hexahydrate in Acidovorax sp. GW101-3H11
For stress Cobalt chloride hexahydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Glycine and Serine Utilization | 1 |
| Iron acquisition in Vibrio | 1 |
| Pyridoxin (Vitamin B6) Biosynthesis | 1 |
| Serine Biosynthesis | 1 |
| Transport of Iron | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-serine biosynthesis I | 3 | 3 | 1 |
| L-cysteine biosynthesis IX (Trichomonas vaginalis) | 3 | 2 | 1 |
| superpathway of L-serine and glycine biosynthesis I | 4 | 4 | 1 |
| L-glutamate degradation XI (reductive Stickland reaction) | 7 | 3 | 1 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 9 | 1 |
| L-glutamate degradation V (via hydroxyglutarate) | 10 | 6 | 1 |