Experiment set2IT022 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_13070 -4.4 -5.3 phosphoserine phosphatase compare
AO353_10670 -4.4 -5.2 shikimate dehydrogenase compare
AO353_07220 -4.3 -5.9 anthranilate synthase compare
AO353_02070 -4.0 -4.8 prephenate dehydratase compare
AO353_20695 -4.0 -5.5 O-succinylhomoserine sulfhydrylase compare
AO353_07230 -3.9 -13.7 anthranilate synthase compare
AO353_12285 -3.9 -9.3 N-formylglutamate deformylase (EC 3.5.1.68) (from data) conserved
AO353_20665 -3.8 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_14505 -3.8 -10.4 ketol-acid reductoisomerase compare
AO353_07215 -3.7 -6.1 anthranilate phosphoribosyltransferase compare
AO353_20540 -3.6 -8.0 aromatic amino acid aminotransferase compare
AO353_11775 -3.6 -6.9 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_00310 -3.6 -7.3 transaldolase compare
AO353_12235 -3.5 -12.6 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) conserved
AO353_02075 -3.5 -9.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08780 -3.5 -8.7 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08180 -3.5 -12.2 homoserine O-acetyltransferase compare
AO353_20635 -3.5 -11.3 3-isopropylmalate dehydrogenase compare
AO353_12280 -3.5 -11.8 Imidazolonepropionase (EC 3.5.2.7) (from data) conserved
AO353_20620 -3.4 -6.9 isopropylmalate isomerase compare
AO353_08185 -3.4 -9.7 methionine biosynthesis protein MetW compare
AO353_20625 -3.4 -4.6 3-isopropylmalate dehydratase compare
AO353_08345 -3.4 -8.4 dihydroxy-acid dehydratase compare
AO353_14400 -3.3 -3.2 Fis family transcriptional regulator compare
AO353_12250 -3.3 -9.9 Urocanate hydratase (EC 4.2.1.49) (from data) conserved
AO353_08685 -3.3 -8.9 N-acetylglutamate synthase compare
AO353_07155 -3.2 -6.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07210 -3.2 -6.1 indole-3-glycerol-phosphate synthase compare
AO353_19060 -3.1 -5.5 CysB family transcriptional regulator compare
AO353_15925 -3.1 -13.3 2-isopropylmalate synthase compare
AO353_08510 -3.0 -5.0 3-phosphoglycerate dehydrogenase compare
AO353_10710 -3.0 -4.1 tryptophan synthase subunit beta compare
AO353_00430 -3.0 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_22800 -3.0 -3.5 sulfite reductase compare
AO353_14370 -3.0 -6.4 glucose-6-phosphate isomerase compare
AO353_09285 -3.0 -12.0 reactive intermediate/imine deaminase compare
AO353_14495 -2.9 -9.7 acetolactate synthase 3 catalytic subunit compare
AO353_12270 -2.9 -3.9 histidine ammonia-lyase compare
AO353_14115 -2.8 -6.5 gamma-glutamyl kinase compare
AO353_12460 -2.8 -8.1 malate dehydrogenase compare
AO353_09000 -2.8 -5.4 argininosuccinate lyase compare
AO353_05080 -2.8 -11.3 sulfate adenylyltransferase compare
AO353_02250 -2.8 -4.5 chorismate synthase compare
AO353_04155 -2.7 -12.3 ornithine carbamoyltransferase compare
AO353_01375 -2.7 -7.0 phosphate acyltransferase compare
AO353_02710 -2.7 -9.6 (p)ppGpp synthetase compare
AO353_14500 -2.7 -6.6 acetolactate synthase 3 regulatory subunit compare
AO353_12500 -2.7 -1.8 shikimate kinase compare
AO353_04105 -2.6 -8.6 argininosuccinate synthase compare
AO353_12115 -2.6 -2.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12245 -2.6 -4.2 hypothetical protein conserved
AO353_05520 -2.6 -6.2 nicotinate-nucleotide pyrophosphorylase compare
AO353_03795 -2.6 -4.9 fumarate hydratase compare
AO353_07315 -2.6 -3.0 rRNA methyltransferase compare
AO353_12255 -2.5 -11.7 sulfonate ABC transporter substrate-binding protein conserved
AO353_10705 -2.5 -4.7 tryptophan synthase subunit alpha compare
AO353_06495 -2.4 -6.0 gamma-glutamyl phosphate reductase compare
AO353_00825 -2.4 -3.5 porin compare
AO353_08165 -2.4 -3.2 pyrroline-5-carboxylate reductase compare
AO353_20175 -2.4 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_08015 -2.3 -7.5 5,10-methylenetetrahydrofolate reductase compare
AO353_08885 -2.3 -15.2 polyphosphate kinase compare
AO353_09240 -2.3 -3.8 acetylglutamate kinase compare
AO353_07355 -2.3 -5.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_12275 -2.2 -12.1 histidine permease (from data) conserved
AO353_05075 -2.2 -10.0 adenylylsulfate kinase compare
AO353_08470 -2.1 -4.5 RNA pyrophosphohydrolase compare
AO353_11730 -2.1 -8.7 glutamate--cysteine ligase compare
AO353_08465 -2.1 -14.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_07515 -2.1 -2.4 transporter compare
AO353_08130 -2.1 -2.8 uracil phosphoribosyltransferase compare
AO353_12345 -2.1 -2.8 twin-arginine protein translocation system subunit TatC compare
AO353_03525 -2.0 -9.2 quinolinate synthase A compare
AO353_12105 -2.0 -6.1 peptidase S41 compare
AO353_16210 -2.0 -11.9 XRE family transcriptional regulator compare
AO353_20660 -1.9 -4.3 pseudouridine synthase compare
AO353_14775 -1.9 -5.9 hypothetical protein compare
AO353_00495 -1.9 -2.8 DNA topoisomerase I compare
AO353_14405 -1.9 -10.8 ATPase compare
AO353_06850 -1.9 -5.0 MFS transporter compare
AO353_03590 -1.8 -3.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_11850 -1.8 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_10025 -1.8 -11.8 pyruvate carboxylase subunit B compare
AO353_02975 -1.8 -3.5 aspartate kinase compare
AO353_03585 -1.8 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_13100 -1.8 -1.6 GTPase RsgA compare
AO353_13245 -1.8 -8.1 hypothetical protein compare
AO353_07525 -1.8 -11.0 biotin synthase compare
AO353_18540 -1.7 -3.3 pseudouridine synthase compare
AO353_04220 -1.7 -5.9 chemotaxis protein CheY compare
AO353_05550 -1.7 -6.1 pseudouridine synthase compare
AO353_04355 -1.7 -2.2 homoserine dehydrogenase compare
AO353_06040 -1.7 -3.1 exodeoxyribonuclease V subunit alpha compare
AO353_07075 -1.7 -4.4 elongation factor Tu compare
AO353_03580 -1.7 -3.6 ATP-dependent DNA helicase RuvB compare
AO353_07445 -1.6 -2.1 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_14410 -1.6 -6.7 MFS transporter compare
AO353_13140 -1.6 -4.8 tRNA dimethylallyltransferase compare
AO353_05690 -1.6 -3.3 SsrA-binding protein compare
AO353_09040 -1.6 -2.0 diaminopimelate epimerase compare
AO353_08880 -1.5 -2.6 exopolyphosphatase compare
AO353_00650 -1.5 -2.6 cytochrome biogenesis protein compare
AO353_17650 -1.5 -4.8 response regulator SirA compare
AO353_05625 -1.5 -1.9 transcription elongation factor GreA compare
AO353_20170 -1.5 -4.3 trigger factor compare
AO353_25925 -1.5 -2.7 hypothetical protein compare
AO353_13925 -1.5 -2.7 XRE family transcriptional regulator compare
AO353_03615 -1.5 -2.7 cold-shock protein compare
AO353_06460 -1.5 -6.2 hypothetical protein compare
AO353_06045 -1.5 -5.7 exodeoxyribonuclease V subunit beta compare
AO353_00865 -1.4 -7.4 phosphoenolpyruvate synthase compare
AO353_02720 -1.4 -5.0 cysteine synthase compare
AO353_14220 -1.4 -1.6 ribosomal large subunit pseudouridine synthase D compare
AO353_14935 -1.4 -3.7 aminopeptidase compare
AO353_13640 -1.4 -3.4 histidine kinase compare
AO353_17620 -1.4 -10.3 L-aspartate oxidase compare
AO353_16710 -1.4 -2.7 hypothetical protein compare
AO353_12710 -1.4 -2.0 thioredoxin compare
AO353_11165 -1.4 -7.6 hypothetical protein compare
AO353_27650 -1.4 -3.8 cell division protein FtsK compare
AO353_08265 -1.4 -4.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_10715 -1.4 -5.7 LysR family transcriptional regulator conserved
AO353_00090 -1.4 -3.3 hypothetical protein compare
AO353_10030 -1.3 -7.8 pyruvate carboxylase subunit A compare
AO353_14420 -1.3 -3.2 molecular chaperone DnaK compare
AO353_02300 -1.3 -2.5 MarR family transcriptional regulator compare
AO353_00105 -1.3 -2.1 hypothetical protein compare
AO353_22305 -1.3 -2.1 LysR family transcriptional regulator compare
AO353_15595 -1.3 -3.5 hypothetical protein compare
AO353_12420 -1.3 -3.2 predicted FeS cluster maintenance protein (from data) compare
AO353_26090 -1.3 -2.1 hypothetical protein compare
AO353_02005 -1.3 -2.3 hypothetical protein compare
AO353_20095 -1.3 -4.5 histidine kinase compare
AO353_09890 -1.3 -4.1 phosphate ABC transporter ATP-binding protein compare
AO353_12510 -1.3 -7.8 cell division protein compare
AO353_03670 -1.2 -3.9 ornithine acetyltransferase compare
AO353_07325 -1.2 -2.1 diadenosine tetraphosphatase compare
AO353_10455 -1.2 -1.8 tRNA modification GTPase MnmE compare
AO353_16940 -1.2 -4.5 deoxycytidine triphosphate deaminase compare
AO353_04520 -1.2 -4.1 elongation factor 4 compare
AO353_08980 -1.2 -2.5 heme biosynthesis operon protein HemX compare
AO353_04365 -1.2 -4.0 recombinase XerD compare
AO353_03020 -1.2 -5.7 arginine N-succinyltransferase compare
AO353_02465 -1.2 -2.4 hypothetical protein compare
AO353_00510 -1.2 -4.4 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_13080 -1.2 -5.8 thiosulfate sulfurtransferase compare
AO353_07495 -1.2 -9.3 acyl-CoA dehydrogenase compare
AO353_04185 -1.2 -4.3 DeoR family transcriptional regulator compare
AO353_03710 -1.2 -2.4 formyltetrahydrofolate deformylase compare
AO353_12130 -1.2 -3.9 preprotein translocase subunit SecB compare
AO353_13225 -1.2 -2.6 50S ribosomal protein L9 compare
AO353_21830 -1.2 -7.9 chemotaxis protein CheY compare
AO353_16845 -1.2 -6.2 LysR family transcriptional regulator compare
AO353_00750 -1.2 -3.1 GntR family transcriptional regulator compare
AO353_08045 -1.2 -8.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_10035 -1.2 -5.7 LysR family transcriptional regulator compare
AO353_10440 -1.1 -3.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_04565 -1.1 -4.1 nucleoid-associated protein compare
AO353_06050 -1.1 -4.5 exodeoxyribonuclease V subunit gamma compare
AO353_09915 -1.1 -5.1 long-chain acyl-CoA thioester hydrolase compare
AO353_04175 -1.1 -3.0 glycerol uptake facilitator GlpF compare
AO353_13220 -1.1 -4.6 hypothetical protein compare
AO353_00590 -1.1 -4.3 cytochrome C oxidase Cbb3 compare
AO353_12870 -1.1 -8.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_20630 -1.1 -5.6 SAM-dependent methyltransferase compare
AO353_02000 -1.1 -3.2 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_15830 -1.1 -2.3 transcriptional regulator compare
AO353_07505 -1.1 -5.4 dethiobiotin synthetase compare
AO353_07510 -1.1 -6.1 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_09945 -1.1 -3.4 LysR family transcriptional regulator compare
AO353_19090 -1.1 -1.9 MarR family transcriptional regulator compare
AO353_15250 -1.0 -2.6 cytochrome B compare
AO353_16805 -1.0 -3.8 recombinase RecA compare
AO353_10940 -1.0 -2.4 cytochrome compare
AO353_19530 -1.0 -1.8 quinohemoprotein amine dehydrogenase compare
AO353_07940 -1.0 -2.8 hypothetical protein compare
AO353_07520 -1.0 -6.8 8-amino-7-oxononanoate synthase compare
AO353_21615 -1.0 -6.3 methionine synthase compare
AO353_02715 -1.0 -3.0 23S rRNA methyltransferase compare
AO353_22340 -1.0 -4.2 GfdT protein compare
AO353_08115 -1.0 -3.8 energy transducer TonB compare
AO353_19360 -1.0 -1.8 peroxiredoxin compare
AO353_10495 -1.0 -2.5 serine hydroxymethyltransferase compare
AO353_03630 -1.0 -6.5 porin compare
AO353_08485 -1.0 -6.8 threonine dehydratase compare
AO353_04055 -0.9 -1.7 methionine--tRNA ligase compare
AO353_12015 -0.9 -1.7 antitoxin compare
AO353_23945 -0.9 -1.5 hypothetical protein compare
AO353_11770 -0.9 -1.6 molecular chaperone Hsp33 compare
AO353_19145 -0.9 -2.6 protease HtpX compare
AO353_14940 -0.9 -2.4 malate:quinone oxidoreductase compare
AO353_17175 -0.9 -2.2 beta-ketoadipyl CoA thiolase compare
AO353_17035 -0.9 -3.5 hypothetical protein compare
AO353_12260 -0.9 -2.0 ABC transporter permease compare
AO353_26105 -0.9 -2.8 structural protein P5 compare
AO353_14740 -0.9 -2.2 GTP-binding protein compare
AO353_02195 -0.9 -2.7 spermidine synthase compare
AO353_00515 -0.9 -2.4 hypothetical protein compare
AO353_06155 -0.9 -5.1 copper-transporting ATPase compare
AO353_05150 -0.9 -3.1 ABC transporter ATP-binding protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Histidine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Histidine across organisms