Experiment set2IT022 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Histidine carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_09745 +1.2 2.2 hypothetical protein compare
AO353_19810 +1.1 3.3 filamentous hemagglutinin compare
AO353_12240 +1.0 3.4 histidine utilization repressor compare
AO353_28815 +1.0 2.4 hypothetical protein compare
AO353_17935 +1.0 3.4 hypothetical protein compare
AO353_07910 +0.9 3.2 hypothetical protein compare
AO353_09660 +0.9 2.4 hypothetical protein compare
AO353_27155 +0.9 2.2 hypothetical protein compare
AO353_09560 +0.8 1.3 type VI secretion protein compare
AO353_06725 +0.8 1.9 hypothetical protein compare
AO353_29215 +0.7 1.5 alpha/beta hydrolase compare
AO353_02280 +0.7 1.5 DNA mismatch repair protein MutS compare
AO353_24745 +0.7 1.6 hypothetical protein compare
AO353_06355 +0.7 2.4 thiamine-phosphate pyrophosphorylase compare
AO353_24830 +0.7 2.2 enoyl-CoA hydratase compare
AO353_20425 +0.7 1.6 ArsC family transcriptional regulator compare
AO353_11190 +0.7 5.4 ABC transporter compare
AO353_24605 +0.7 1.9 hypothetical protein compare
AO353_23400 +0.7 1.4 hypothetical protein compare
AO353_14915 +0.6 1.5 (2Fe-2S)-binding protein compare
AO353_18560 +0.6 1.4 class I peptide chain release factor compare
AO353_13420 +0.6 1.5 hypothetical protein compare
AO353_11180 +0.6 5.7 large adhesive protein compare
AO353_14945 +0.6 1.6 hypothetical protein compare
AO353_18840 +0.6 2.1 flagellar biosynthesis protein FlhB compare
AO353_12650 +0.6 1.2 hypothetical protein compare
AO353_15645 +0.6 2.2 hypothetical protein compare
AO353_28640 +0.6 2.2 hypothetical protein compare
AO353_15395 +0.6 2.3 transcriptional regulator compare
AO353_11135 +0.6 2.5 polyketide cyclase compare
AO353_04340 +0.6 1.5 hypothetical protein compare
AO353_21940 +0.6 1.5 protein nirG compare
AO353_00665 +0.6 2.1 adenine phosphoribosyltransferase compare
AO353_04230 +0.6 2.3 chemotaxis protein CheW compare
AO353_16385 +0.6 1.8 hypothetical protein compare
AO353_01190 +0.6 1.4 hypothetical protein compare
AO353_25355 +0.6 1.3 hypothetical protein compare
AO353_23440 +0.6 1.5 hypothetical protein compare
AO353_23245 +0.6 1.6 DNA-3-methyladenine glycosylase compare
AO353_23405 +0.6 1.4 hypothetical protein compare
AO353_08630 +0.6 2.5 hypothetical protein compare
AO353_15280 +0.6 2.3 hypothetical protein compare
AO353_19685 +0.6 1.8 alkylhydroperoxidase compare
AO353_27500 +0.5 1.3 hypothetical protein compare
AO353_19625 +0.5 2.1 isopentenyl-diphosphate delta-isomerase compare
AO353_17940 +0.5 1.4 hypothetical protein compare
AO353_09440 +0.5 1.5 type VI secretion protein compare
AO353_25320 +0.5 1.5 phosphoribosyl-dephospho-CoA transferase compare
AO353_10310 +0.5 2.6 CopG family transcriptional regulator compare
AO353_25445 +0.5 1.8 carbonic anhydrase compare
AO353_26220 +0.5 1.5 hypothetical protein compare
AO353_09875 +0.5 1.3 hypothetical protein compare
AO353_11195 +0.5 4.7 hemolysin secretion protein D compare
AO353_21100 +0.5 1.9 DNA-binding protein compare
AO353_27430 +0.5 1.5 hypothetical protein compare
AO353_12625 +0.5 2.2 hypothetical protein compare
AO353_01725 +0.5 1.3 phosphohistidine phosphatase compare
AO353_25945 +0.5 1.9 hypothetical protein compare
AO353_24370 +0.5 2.0 thioredoxin compare
AO353_15000 +0.5 1.6 glycerate dehydrogenase compare
AO353_24135 +0.5 1.6 hypothetical protein compare
AO353_27365 +0.5 1.8 hypothetical protein compare
AO353_13515 +0.5 1.6 Urease (EC 3.5.1.5) (from data) compare
AO353_26190 +0.5 1.8 hypothetical protein compare
AO353_12665 +0.5 1.6 glycosyl transferase compare
AO353_25585 +0.5 1.1 argininosuccinate lyase compare
AO353_00285 +0.5 2.6 Pyocin activator protein PrtN compare
AO353_29280 +0.5 1.3 hypothetical protein compare
AO353_12990 +0.5 2.2 multidrug DMT transporter compare
AO353_19565 +0.5 1.6 vanillate O-demethylase oxidoreductase VanB compare
AO353_21455 +0.5 1.2 cation:proton antiporter compare
AO353_16375 +0.5 1.3 hypothetical protein compare
AO353_17365 +0.5 1.6 hypothetical protein compare
AO353_07695 +0.5 2.0 electron transfer flavoprotein subunit beta compare
AO353_16355 +0.5 1.9 TetR family transcriptional regulator compare
AO353_02330 +0.5 1.2 allantoicase compare
AO353_04190 +0.5 1.1 glycerol-3-phosphate dehydrogenase compare
AO353_15480 +0.5 1.2 hypothetical protein compare
AO353_00195 +0.5 1.2 virion morphogenesis protein compare
AO353_29005 +0.5 1.5 hypothetical protein compare
AO353_26195 +0.5 1.3 hypothetical protein compare
AO353_18325 +0.5 1.3 hypothetical protein compare
AO353_20590 +0.5 1.0 hydrolase compare
AO353_23950 +0.5 1.0 hypothetical protein compare
AO353_11185 +0.5 3.7 channel protein TolC compare
AO353_01020 +0.5 1.9 hypothetical protein compare
AO353_23385 +0.5 2.7 trans-2-enoyl-CoA reductase compare
AO353_23730 +0.4 1.3 hypothetical protein compare
AO353_18715 +0.4 0.8 histidine kinase compare
AO353_26985 +0.4 1.8 hypothetical protein compare
AO353_26280 +0.4 1.8 peptidase M48, Ste24p compare
AO353_18790 +0.4 1.8 histidine kinase compare
AO353_04460 +0.4 3.0 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) compare
AO353_10200 +0.4 2.0 lysine transporter LysE compare
AO353_02600 +0.4 1.1 alpha-ribazole phosphatase compare
AO353_25490 +0.4 1.6 transcriptional regulator compare
AO353_29050 +0.4 1.8 2'-5' RNA ligase compare
AO353_09775 +0.4 1.6 hypothetical protein compare
AO353_05620 +0.4 1.9 MFS transporter compare
AO353_19720 +0.4 1.7 hemolysin D compare
AO353_05280 +0.4 1.2 4-carboxymuconolactone decarboxylase compare
AO353_27590 +0.4 2.5 hypothetical protein compare
AO353_00620 +0.4 0.9 cytochrome C oxidase Cbb3 compare
AO353_11170 +0.4 3.1 hypothetical protein compare
AO353_13635 +0.4 2.1 hypothetical protein compare
AO353_13965 +0.4 2.3 large-conductance mechanosensitive channel compare
AO353_22215 +0.4 1.4 hypothetical protein compare
AO353_16635 +0.4 2.1 pyocin R2, holin compare
AO353_13660 +0.4 2.5 tRNA-dihydrouridine synthase B compare
AO353_11715 +0.4 2.3 taurine ABC transporter permease compare
AO353_00755 +0.4 2.2 hypothetical protein compare
AO353_12080 +0.4 2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_02655 +0.4 2.3 peptidase P60 compare
AO353_23470 +0.4 2.5 microcin ABC transporter permease compare
AO353_27220 +0.4 1.7 hypothetical protein compare
AO353_18745 +0.4 1.2 flagellar biosynthesis protein flip compare
AO353_20420 +0.4 2.5 NADPH-dependent FMN reductase compare
AO353_14485 +0.4 0.7 pseudouridine synthase compare
AO353_25910 +0.4 2.0 Fructokinase (EC 2.7.1.4) (from data) compare
AO353_13915 +0.4 2.0 hypothetical protein compare
AO353_22360 +0.4 1.1 ABC transporter ATP-binding protein compare
AO353_08620 +0.4 0.9 hypothetical protein compare
AO353_05880 +0.4 1.0 plasmid stabilization protein compare
AO353_15500 +0.4 3.0 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
AO353_09490 +0.4 1.5 hypothetical protein compare
AO353_18590 +0.4 2.7 AAA family ATPase compare
AO353_19070 +0.4 1.3 hypothetical protein compare
AO353_28515 +0.4 1.9 malate:quinone oxidoreductase compare
AO353_12795 +0.4 1.6 ZapA compare
AO353_03260 +0.4 2.4 epimerase compare
AO353_15510 +0.4 2.7 ribosomal subunit interface protein compare
AO353_19135 +0.4 1.9 aromatic ring-opening dioxygenase LigB compare
AO353_16615 +0.4 3.1 RNA polymerase sigma factor RpoS compare
AO353_13465 +0.4 2.1 hypothetical protein compare
AO353_04240 +0.4 0.6 chemotaxis protein CheW compare
AO353_04650 +0.4 1.1 molybdenum cofactor biosynthesis protein MoaE compare
AO353_11050 +0.4 1.3 hypothetical protein compare
AO353_02150 +0.4 1.5 fumarate hydratase compare
AO353_12585 +0.4 2.1 hypothetical protein compare
AO353_17380 +0.4 1.6 hypothetical protein compare
AO353_21595 +0.4 2.1 serine/threonine protein kinase compare
AO353_27520 +0.4 1.4 3-demethylubiquinone-9 3-methyltransferase compare
AO353_10320 +0.4 0.9 hypothetical protein compare
AO353_00440 +0.4 1.5 hypothetical protein compare
AO353_19740 +0.4 2.1 MFS transporter compare
AO353_02595 +0.4 1.3 cobalamin synthase compare
AO353_20115 +0.4 1.5 LysR family transcriptional regulator compare
AO353_28310 +0.4 1.3 deaminase compare
AO353_03105 +0.4 2.2 XRE family transcriptional regulator compare
AO353_26870 +0.4 1.2 AP endonuclease compare
AO353_19675 +0.4 1.9 hypothetical protein compare
AO353_19310 +0.4 0.8 enoyl-CoA hydratase compare
AO353_27440 +0.4 1.5 hypothetical protein compare
AO353_07830 +0.4 1.7 dimethylmenaquinone methyltransferase compare
AO353_13695 +0.4 2.1 chemotaxis protein compare
AO353_09495 +0.4 1.7 hypothetical protein compare
AO353_00260 +0.4 0.6 hypothetical protein compare
AO353_01715 +0.4 2.1 esterase compare
AO353_01730 +0.4 2.3 lipase compare
AO353_25275 +0.4 1.6 hypothetical protein compare
AO353_00670 +0.3 1.5 acyl-CoA dehydrogenase compare
AO353_27540 +0.3 1.6 TetR family transcriptional regulator compare
AO353_00455 +0.3 1.0 beta-hexosaminidase compare
AO353_28285 +0.3 1.5 hypothetical protein compare
AO353_26005 +0.3 2.2 hypothetical protein compare
AO353_04320 +0.3 1.5 single-stranded-DNA-specific exonuclease RecJ compare
AO353_09470 +0.3 2.3 hypothetical protein compare
AO353_24335 +0.3 1.5 L-asparagine permease compare
AO353_21300 +0.3 1.7 glycolate oxidase iron-sulfur subunit compare
AO353_26400 +0.3 1.3 hypothetical protein compare
AO353_01800 +0.3 1.5 hypothetical protein compare
AO353_14340 +0.3 1.0 phospholipid-binding protein compare
AO353_24120 +0.3 1.0 hypothetical protein compare
AO353_08000 +0.3 1.9 arabinose transporter permease compare
AO353_26125 +0.3 1.2 hypothetical protein compare
AO353_20255 +0.3 1.2 transcriptional regulator compare
AO353_28300 +0.3 0.9 cupin compare
AO353_18130 +0.3 1.0 hypothetical protein compare
AO353_08380 +0.3 1.7 GTPase SAR1 compare
AO353_01055 +0.3 2.9 AraC family transcriptional regulator compare
AO353_19035 +0.3 2.1 pilus assembly protein PilZ compare
AO353_01135 +0.3 0.7 enoyl-CoA hydratase compare
AO353_27530 +0.3 1.6 acetyl-CoA acetyltransferase compare
AO353_09600 +0.3 1.5 hypothetical protein compare
AO353_19045 +0.3 2.0 2-dehydropantoate 2-reductase compare
AO353_15485 +0.3 1.8 phosphate-starvation-inducible protein PsiE compare
AO353_19605 +0.3 0.8 hypothetical protein compare
AO353_28555 +0.3 0.8 LysR family transcriptional regulator compare
AO353_27970 +0.3 1.6 ABC transporter substrate-binding protein compare
AO353_05055 +0.3 2.0 peptidylprolyl isomerase compare
AO353_27690 +0.3 2.3 isocitrate dehydrogenase compare
AO353_11485 +0.3 1.4 hypothetical protein compare
AO353_24600 +0.3 0.9 hypothetical protein compare
AO353_25950 +0.3 1.6 ecotin compare
AO353_08895 +0.3 1.8 hypothetical protein compare
AO353_08060 +0.3 1.0 hypothetical protein compare
AO353_22330 +0.3 1.3 AraC family transcriptional regulator compare
AO353_20000 +0.3 1.1 phosphoribosyltransferase compare
AO353_19985 +0.3 1.9 polysaccharide deacetylase compare
AO353_19280 +0.3 0.9 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Histidine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Histidine across organisms