Experiment set2IT021 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_5425 +1.1 1.9 hypothetical protein compare
Pf6N2E2_1095 +1.1 3.0 Opine oxidase subunit C compare
Pf6N2E2_1040 +1.0 2.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2223 +1.0 3.1 hypothetical protein compare
Pf6N2E2_3667 +0.9 1.6 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_1099 +0.9 2.9 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_902 +0.9 1.2 hypothetical protein compare
Pf6N2E2_1691 +0.9 2.1 hypothetical protein compare
Pf6N2E2_4153 +0.8 1.5 Sensory box histidine kinase compare
Pf6N2E2_2440 +0.8 1.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_3641 +0.8 2.6 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_3981 +0.8 7.5 T1SS secreted agglutinin RTX compare
Pf6N2E2_2181 +0.8 1.6 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_193 +0.8 3.3 hypothetical protein compare
Pf6N2E2_3979 +0.8 6.5 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_3978 +0.8 6.3 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_1656 +0.8 1.8 hypothetical protein compare
Pf6N2E2_2755 +0.8 1.6 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_377 +0.7 3.0 hypothetical protein compare
Pf6N2E2_5312 +0.7 1.5 FIG00964214: hypothetical protein compare
Pf6N2E2_92 +0.7 3.1 hypothetical protein compare
Pf6N2E2_2012 +0.7 2.0 hypothetical protein compare
Pf6N2E2_3271 +0.7 1.3 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1499 +0.7 1.8 ABC transporter amino acid-binding protein compare
Pf6N2E2_3980 +0.7 5.5 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_1034 +0.7 1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_689 +0.6 2.0 FIG00956189: hypothetical protein compare
Pf6N2E2_1984 +0.6 3.0 probable exported protein STY4558 compare
Pf6N2E2_331 +0.6 2.3 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_3875 +0.6 1.6 FIG00953324: hypothetical protein compare
Pf6N2E2_6047 +0.6 1.5 hypothetical protein compare
Pf6N2E2_5510 +0.6 1.4 FIG00955324: hypothetical protein compare
Pf6N2E2_3338 +0.6 1.7 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_2594 +0.6 3.8 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_3569 +0.6 1.7 hypothetical protein compare
Pf6N2E2_3009 +0.6 2.7 Phage tail tube protein compare
Pf6N2E2_170 +0.6 1.8 lipoprotein, putative compare
Pf6N2E2_6085 +0.6 1.4 Aha1 domain superfamily compare
Pf6N2E2_552 +0.6 2.0 Uncharacterized protein ImpF compare
Pf6N2E2_3864 +0.6 2.6 hypothetical protein compare
Pf6N2E2_2578 +0.6 1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2371 +0.6 1.8 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_1176 +0.6 2.6 Mll2356 protein compare
Pf6N2E2_1896 +0.6 1.9 hypothetical protein compare
Pf6N2E2_4708 +0.6 2.1 hypothetical protein compare
Pf6N2E2_5555 +0.6 1.5 Cold shock protein CspA compare
Pf6N2E2_144 +0.6 5.0 Uncharacterized protein YtfM precursor compare
Pf6N2E2_962 +0.6 1.9 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_2579 +0.6 3.5 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_4969 +0.6 1.2 hypothetical protein compare
Pf6N2E2_2175 +0.6 1.8 Transcriptional regulator, RpiR family compare
Pf6N2E2_687 +0.6 1.9 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_2934 +0.6 1.8 lipoprotein, putative compare
Pf6N2E2_4624 +0.5 1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_750 +0.5 1.8 Transcriptional regulator, DeoR family compare
Pf6N2E2_4974 +0.5 3.7 DedA protein compare
Pf6N2E2_3612 +0.5 1.6 HflK protein compare
Pf6N2E2_1694 +0.5 1.0 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_3344 +0.5 2.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_2441 +0.5 2.6 putative ATP/GTP-binding protein compare
Pf6N2E2_2597 +0.5 4.0 Flagellar regulatory protein FleQ compare
Pf6N2E2_3122 +0.5 1.2 Chemotaxis signal transduction protein compare
Pf6N2E2_924 +0.5 1.6 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_3792 +0.5 3.3 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5720 +0.5 4.4 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_719 +0.5 1.0 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_6040 +0.5 2.8 hypothetical protein compare
Pf6N2E2_3151 +0.5 2.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_1403 +0.5 2.1 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_5714 +0.5 0.9 Flavoprotein WrbA compare
Pf6N2E2_338 +0.5 1.4 Transcriptional regulator, AraC family compare
Pf6N2E2_4148 +0.5 3.7 Glutamate-aspartate carrier protein compare
Pf6N2E2_3219 +0.5 2.1 hypothetical protein compare
Pf6N2E2_1398 +0.5 2.0 Rhodanese-related sulfurtransferase compare
Pf6N2E2_1083 +0.5 0.8 hypothetical protein compare
Pf6N2E2_2627 +0.5 3.2 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_4694 +0.5 2.5 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5207 +0.5 1.2 hypothetical protein compare
Pf6N2E2_5697 +0.5 4.1 Flagellar hook protein FlgE compare
Pf6N2E2_2593 +0.5 3.2 Flagellar M-ring protein FliF compare
Pf6N2E2_5691 +0.5 3.4 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_4459 +0.5 1.1 Transcriptional regulator, GntR family compare
Pf6N2E2_5086 +0.5 1.0 hypothetical protein compare
Pf6N2E2_2306 +0.5 2.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5816 +0.5 1.0 Smr domain protein compare
Pf6N2E2_4678 +0.5 0.8 hypothetical protein compare
Pf6N2E2_1683 +0.5 1.4 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_6057 +0.5 1.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5150 +0.5 2.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2739 +0.5 1.6 UPF0339 protein NMA1193/NMA1859 compare
Pf6N2E2_2577 +0.5 3.4 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_1046 +0.5 2.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1361 +0.5 1.7 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf6N2E2_5661 +0.5 2.3 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_4721 +0.5 1.9 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_2592 +0.5 2.7 Flagellar motor switch protein FliG compare
Pf6N2E2_3239 +0.5 3.8 FIG00963364: hypothetical protein compare
Pf6N2E2_2710 +0.5 1.8 FIG00953701: hypothetical protein compare
Pf6N2E2_5509 +0.5 1.7 FIG00955586: hypothetical protein compare
Pf6N2E2_3568 +0.5 0.6 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_2967 +0.5 0.9 Cold shock protein CspA compare
Pf6N2E2_4057 +0.5 0.6 lipoprotein, putative compare
Pf6N2E2_2195 +0.5 2.2 cI compare
Pf6N2E2_3659 +0.4 2.3 Protein fixF compare
Pf6N2E2_922 +0.4 1.1 FIG00794167: hypothetical protein compare
Pf6N2E2_1371 +0.4 1.7 hypothetical protein compare
Pf6N2E2_4943 +0.4 1.3 PspA/IM30 family protein compare
Pf6N2E2_2722 +0.4 1.5 FIG00954807: hypothetical protein compare
Pf6N2E2_241 +0.4 0.9 hypothetical protein compare
Pf6N2E2_1470 +0.4 1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_672 +0.4 1.5 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_6087 +0.4 1.2 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2590 +0.4 3.4 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_2207 +0.4 2.2 cytochrome b(561) compare
Pf6N2E2_5664 +0.4 2.3 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_629 +0.4 2.0 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_568 +0.4 2.0 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf6N2E2_5128 +0.4 2.2 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_4270 +0.4 3.4 putative Glutathione-regulated potassium-efflux system protein KefB compare
Pf6N2E2_2628 +0.4 2.0 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_2502 +0.4 1.8 O-antigen acetylase compare
Pf6N2E2_4343 +0.4 2.8 Phosphoprotein phosphatase PppA compare
Pf6N2E2_4392 +0.4 1.7 Translation initiation inhibitor compare
Pf6N2E2_4397 +0.4 1.8 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_2625 +0.4 2.2 Flagellar P-ring protein FlgI compare
Pf6N2E2_420 +0.4 1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5761 +0.4 0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_1110 +0.4 2.2 FIG00964414: hypothetical protein compare
Pf6N2E2_2267 +0.4 1.3 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_199 +0.4 1.1 hypothetical protein compare
Pf6N2E2_3743 +0.4 2.6 General secretion pathway protein G compare
Pf6N2E2_4381 +0.4 2.5 hypothetical protein compare
Pf6N2E2_3791 +0.4 3.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5694 +0.4 2.6 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_1529 +0.4 2.3 hypothetical protein compare
Pf6N2E2_5695 +0.4 3.0 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2576 +0.4 3.3 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_4096 +0.4 3.0 Sulfate transporter family protein in cluster with carbonic anhydrase compare
Pf6N2E2_3362 +0.4 1.3 hypothetical protein compare
Pf6N2E2_1070 +0.4 2.4 Endonuclease/Exonuclease/phosphatase family protein compare
Pf6N2E2_2350 +0.4 1.3 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_4427 +0.4 1.4 FIG00954215: hypothetical protein compare
Pf6N2E2_5455 +0.4 1.6 hypothetical protein compare
Pf6N2E2_445 +0.4 2.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_1312 +0.4 1.1 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_3658 +0.4 2.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_482 +0.4 0.6 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_1994 +0.4 1.7 putative lipoprotein compare
Pf6N2E2_5834 +0.4 2.2 Eukaryotic-type low-affinity urea transporter compare
Pf6N2E2_5452 +0.4 1.3 hypothetical protein compare
Pf6N2E2_2351 +0.4 1.7 Oxygen-regulated invasion protein OrgA compare
Pf6N2E2_4095 +0.4 3.2 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_1981 +0.4 1.8 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_349 +0.4 1.5 hypothetical protein compare
Pf6N2E2_958 +0.4 1.3 hypothetical protein compare
Pf6N2E2_495 +0.4 1.5 YD repeat protein compare
Pf6N2E2_2587 +0.4 3.2 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf6N2E2_1165 +0.4 1.6 hypothetical protein compare
Pf6N2E2_3624 +0.4 2.5 Flagellar motor rotation protein MotB compare
Pf6N2E2_4028 +0.4 2.6 Biofilm PGA synthesis auxiliary protein PgaD compare
Pf6N2E2_2901 +0.4 1.9 Iron siderophore sensor protein compare
Pf6N2E2_831 +0.4 0.9 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_2572 +0.4 1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3179 +0.4 1.0 FIG021952: putative membrane protein compare
Pf6N2E2_3401 +0.4 2.6 Translation initiation inhibitor compare
Pf6N2E2_5974 +0.4 1.9 Uncharacterized glutathione S-transferase-like protein compare
Pf6N2E2_1199 +0.4 1.2 hypothetical protein compare
Pf6N2E2_142 +0.4 2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5476 +0.4 1.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2164 +0.4 2.6 hypothetical protein compare
Pf6N2E2_1673 +0.4 1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_3567 +0.4 1.4 FIG00963947: hypothetical protein compare
Pf6N2E2_2591 +0.4 1.9 Flagellar assembly protein FliH compare
Pf6N2E2_5057 +0.4 1.5 hypothetical protein compare
Pf6N2E2_5015 +0.4 1.4 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_5052 +0.4 1.1 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_2617 +0.4 2.2 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
Pf6N2E2_1692 +0.4 1.4 transporter, LysE family compare
Pf6N2E2_1587 +0.4 2.3 Dihydroflavonol-4-reductase (EC 1.1.1.219) compare
Pf6N2E2_5872 +0.4 2.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_242 +0.4 1.7 Glycine betaine ABC transport system permease protein compare
Pf6N2E2_6060 +0.4 1.6 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_6050 +0.4 1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2929 +0.4 1.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_28 +0.4 1.3 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_5990 +0.4 0.8 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_786 +0.4 1.7 Type-1 fimbrial protein, A chain precursor compare
Pf6N2E2_2626 +0.4 2.4 Flagellar L-ring protein FlgH compare
Pf6N2E2_2867 +0.4 1.9 hypothetical protein compare
Pf6N2E2_3421 +0.4 1.7 Transcriptional regulator ahyR/asaR family compare
Pf6N2E2_2436 +0.4 1.7 DNA-binding response regulator, LuxR family compare
Pf6N2E2_1860 +0.4 1.4 Ferredoxin, 2Fe-2S compare
Pf6N2E2_2561 +0.4 1.2 FIG00955434: hypothetical protein compare
Pf6N2E2_2754 +0.4 1.4 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_395 +0.4 1.5 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_5328 +0.4 1.8 FIG00958649: hypothetical protein compare
Pf6N2E2_1989 +0.4 0.7 hypothetical protein compare
Pf6N2E2_5576 +0.4 1.3 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_3941 +0.4 1.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5531 +0.4 1.7 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas fluorescens FW300-N2E2

For carbon source L-Malic acid disodium salt monohydrate across organisms