Experiment set2IT021 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Arginine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_02995 -4.5 -7.6 succinylglutamate desuccinylase compare
AO353_03035 -4.2 -4.1 AraC family transcriptional regulator compare
AO353_13070 -4.1 -6.9 phosphoserine phosphatase compare
AO353_12070 -4.1 -4.9 imidazoleglycerol-phosphate dehydratase compare
AO353_08185 -4.0 -7.2 methionine biosynthesis protein MetW compare
AO353_20695 -4.0 -5.5 O-succinylhomoserine sulfhydrylase compare
AO353_08885 -4.0 -16.1 polyphosphate kinase compare
AO353_05115 -4.0 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20635 -3.9 -8.7 3-isopropylmalate dehydrogenase compare
AO353_03025 -3.7 -5.0 acetylornithine aminotransferase compare
AO353_20665 -3.7 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12085 -3.7 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_14505 -3.6 -10.7 ketol-acid reductoisomerase compare
AO353_07230 -3.6 -14.7 anthranilate synthase compare
AO353_20620 -3.5 -6.6 isopropylmalate isomerase compare
AO353_03585 -3.5 -3.3 ATP-dependent DNA helicase RuvA compare
AO353_08475 -3.5 -8.6 phosphoserine phosphatase compare
AO353_02070 -3.4 -6.5 prephenate dehydratase compare
AO353_08345 -3.4 -8.3 dihydroxy-acid dehydratase compare
AO353_15925 -3.4 -12.9 2-isopropylmalate synthase compare
AO353_22820 -3.4 -17.3 NAD-glutamate dehydrogenase compare
AO353_03015 -3.4 -4.6 arginine N-succinyltransferase compare
AO353_07210 -3.4 -6.0 indole-3-glycerol-phosphate synthase compare
AO353_14500 -3.4 -4.6 acetolactate synthase 3 regulatory subunit compare
AO353_12090 -3.4 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05110 -3.3 -10.2 histidinol dehydrogenase compare
AO353_05075 -3.3 -10.3 adenylylsulfate kinase compare
AO353_09040 -3.3 -2.3 diaminopimelate epimerase compare
AO353_20625 -3.3 -4.4 3-isopropylmalate dehydratase compare
AO353_08180 -3.3 -12.7 homoserine O-acetyltransferase compare
AO353_08465 -3.2 -16.9 phosphoenolpyruvate-protein phosphotransferase compare
AO353_03010 -3.2 -7.9 succinylglutamate-semialdehyde dehydrogenase compare
AO353_05080 -3.2 -11.0 sulfate adenylyltransferase compare
AO353_12365 -3.2 -4.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_22800 -3.2 -3.1 sulfite reductase compare
AO353_14400 -3.2 -3.8 Fis family transcriptional regulator compare
AO353_08595 -3.1 -9.6 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
AO353_03050 -3.1 -7.5 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
AO353_14220 -3.1 -2.1 ribosomal large subunit pseudouridine synthase D compare
AO353_03005 -3.1 -6.2 succinylarginine dihydrolase compare
AO353_03040 -3.1 -8.7 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) conserved
AO353_11850 -3.0 -4.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_10710 -3.0 -4.6 tryptophan synthase subunit beta compare
AO353_03055 -3.0 -9.8 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) compare
AO353_14495 -3.0 -9.1 acetolactate synthase 3 catalytic subunit compare
AO353_00430 -3.0 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_02075 -2.9 -10.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_10670 -2.9 -7.7 shikimate dehydrogenase compare
AO353_12075 -2.9 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12360 -2.9 -8.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_11775 -2.8 -7.7 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_14115 -2.8 -6.5 gamma-glutamyl kinase compare
AO353_20540 -2.8 -8.2 aromatic amino acid aminotransferase compare
AO353_08510 -2.8 -5.6 3-phosphoglycerate dehydrogenase compare
AO353_02685 -2.8 -4.5 phosphoribosylglycinamide formyltransferase compare
AO353_00310 -2.8 -9.0 transaldolase compare
AO353_07215 -2.7 -7.3 anthranilate phosphoribosyltransferase compare
AO353_03020 -2.7 -7.6 arginine N-succinyltransferase compare
AO353_12500 -2.6 -1.8 shikimate kinase compare
AO353_03045 -2.6 -11.1 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) conserved
AO353_13165 -2.6 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_01350 -2.6 -6.8 4-amino-4-deoxychorismate lyase compare
AO353_07220 -2.6 -7.9 anthranilate synthase compare
AO353_12460 -2.6 -8.5 malate dehydrogenase compare
AO353_02250 -2.5 -4.7 chorismate synthase compare
AO353_20175 -2.5 -4.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_02710 -2.4 -9.9 (p)ppGpp synthetase compare
AO353_08015 -2.4 -7.3 5,10-methylenetetrahydrofolate reductase compare
AO353_19060 -2.3 -5.3 CysB family transcriptional regulator compare
AO353_08470 -2.3 -4.2 RNA pyrophosphohydrolase compare
AO353_06495 -2.2 -5.6 gamma-glutamyl phosphate reductase compare
AO353_13720 -2.2 -13.5 arginine decarboxylase compare
AO353_08165 -2.2 -3.3 pyrroline-5-carboxylate reductase compare
AO353_07315 -2.1 -2.9 rRNA methyltransferase compare
AO353_05105 -2.1 -10.1 histidinol-phosphate aminotransferase compare
AO353_10705 -2.0 -4.2 tryptophan synthase subunit alpha compare
AO353_09275 -2.0 -3.7 DNA-directed RNA polymerase subunit omega compare
AO353_00515 -2.0 -3.9 hypothetical protein compare
AO353_12115 -2.0 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_02005 -2.0 -2.9 hypothetical protein compare
AO353_01375 -2.0 -6.2 phosphate acyltransferase compare
AO353_11730 -2.0 -8.5 glutamate--cysteine ligase compare
AO353_14370 -1.9 -6.8 glucose-6-phosphate isomerase compare
AO353_09950 -1.9 -4.8 aspartate ammonia-lyase compare
AO353_11915 -1.9 -7.1 agmatine deiminase compare
AO353_00510 -1.9 -5.8 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_06040 -1.9 -3.3 exodeoxyribonuclease V subunit alpha compare
AO353_05520 -1.9 -5.8 nicotinate-nucleotide pyrophosphorylase compare
AO353_12105 -1.8 -5.8 peptidase S41 compare
AO353_00495 -1.8 -2.6 DNA topoisomerase I compare
AO353_10900 -1.8 -8.5 hypothetical protein compare
AO353_14775 -1.8 -6.1 hypothetical protein compare
AO353_07495 -1.7 -12.5 acyl-CoA dehydrogenase compare
AO353_03580 -1.7 -3.6 ATP-dependent DNA helicase RuvB compare
AO353_01550 -1.7 -5.5 hypothetical protein compare
AO353_00825 -1.7 -3.3 porin compare
AO353_09000 -1.7 -5.1 argininosuccinate lyase compare
AO353_06045 -1.7 -6.1 exodeoxyribonuclease V subunit beta compare
AO353_19090 -1.7 -2.6 MarR family transcriptional regulator compare
AO353_06155 -1.6 -7.6 copper-transporting ATPase compare
AO353_03590 -1.6 -3.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_03630 -1.6 -9.3 porin compare
AO353_13100 -1.6 -1.7 GTPase RsgA compare
AO353_14405 -1.5 -9.2 ATPase compare
AO353_13140 -1.5 -4.8 tRNA dimethylallyltransferase compare
AO353_05550 -1.5 -5.6 pseudouridine synthase compare
AO353_20810 -1.5 -2.5 hypothetical protein compare
AO353_10985 -1.5 -2.2 hypothetical protein compare
AO353_01355 -1.5 -6.1 3-oxoacyl-ACP synthase compare
AO353_03525 -1.5 -7.4 quinolinate synthase A compare
AO353_07355 -1.4 -4.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_15905 -1.4 -5.4 outer membrane protein assembly factor BamB compare
AO353_11165 -1.4 -7.8 hypothetical protein compare
AO353_00750 -1.4 -3.4 GntR family transcriptional regulator compare
AO353_20170 -1.4 -3.9 trigger factor compare
AO353_08780 -1.4 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_15900 -1.4 -2.7 GTP-binding protein compare
AO353_14585 -1.4 -4.9 ribosomal-protein-alanine acetyltransferase compare
AO353_17620 -1.4 -10.2 L-aspartate oxidase compare
AO353_00635 -1.4 -3.2 hypothetical protein compare
AO353_20095 -1.4 -5.0 histidine kinase compare
AO353_20565 -1.4 -2.0 tRNA-Ala compare
AO353_04565 -1.4 -4.4 nucleoid-associated protein compare
AO353_11505 -1.4 -7.0 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) compare
AO353_07525 -1.4 -9.3 biotin synthase compare
AO353_12015 -1.4 -2.6 antitoxin compare
AO353_05625 -1.4 -1.7 transcription elongation factor GreA compare
AO353_01915 -1.3 -2.1 GlcG protein compare
AO353_23590 -1.3 -2.4 ArsR family transcriptional regulator compare
AO353_10445 -1.3 -2.0 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_10915 -1.3 -8.3 ABC transporter substrate-binding protein compare
AO353_08045 -1.3 -9.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_10905 -1.3 -7.0 zinc ABC transporter ATP-binding protein conserved
AO353_03615 -1.3 -2.4 cold-shock protein compare
AO353_12870 -1.3 -9.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_06050 -1.3 -4.6 exodeoxyribonuclease V subunit gamma compare
AO353_14420 -1.3 -3.1 molecular chaperone DnaK compare
AO353_00505 -1.3 -3.6 3-ketoacyl-CoA thiolase compare
AO353_04500 -1.2 -2.1 DNA repair protein RecO compare
AO353_22220 -1.2 -3.0 copper resistance protein CopC compare
AO353_10455 -1.2 -1.8 tRNA modification GTPase MnmE compare
AO353_28425 -1.2 -2.9 TetR family transcriptional regulator compare
AO353_15250 -1.2 -2.9 cytochrome B compare
AO353_08350 -1.2 -5.7 hypothetical protein compare
AO353_23155 -1.2 -3.4 IclR family transcriptional regulator compare
AO353_15170 -1.2 -2.8 cytochrome D ubiquinol oxidase subunit III compare
AO353_11770 -1.2 -1.8 molecular chaperone Hsp33 compare
AO353_10030 -1.2 -7.1 pyruvate carboxylase subunit A compare
AO353_27415 -1.2 -2.5 hypothetical protein compare
AO353_21640 -1.2 -1.6 cobalt transporter compare
AO353_02100 -1.2 -3.1 phosphoglycolate phosphatase compare
AO353_03670 -1.2 -3.9 ornithine acetyltransferase compare
AO353_10495 -1.2 -2.8 serine hydroxymethyltransferase compare
AO353_12125 -1.1 -4.7 glutaredoxin compare
AO353_04355 -1.1 -1.8 homoserine dehydrogenase compare
AO353_07505 -1.1 -5.7 dethiobiotin synthetase compare
AO353_08775 -1.1 -2.1 cell division protein ZapA compare
AO353_03795 -1.1 -3.4 fumarate hydratase compare
AO353_02040 -1.1 -2.4 integration host factor subunit beta compare
AO353_22375 -1.1 -2.7 cytochrome c-550 PedF compare
AO353_27650 -1.1 -3.3 cell division protein FtsK compare
AO353_10025 -1.1 -8.1 pyruvate carboxylase subunit B compare
AO353_02465 -1.1 -1.8 hypothetical protein compare
AO353_04365 -1.1 -3.7 recombinase XerD compare
AO353_13200 -1.1 -6.7 exoribonuclease R compare
AO353_17855 -1.1 -2.2 ribonuclease D compare
AO353_23285 -1.1 -2.4 hypothetical protein compare
AO353_02715 -1.1 -3.4 23S rRNA methyltransferase compare
AO353_08505 -1.1 -6.3 FAD-linked oxidase compare
AO353_05325 -1.1 -3.5 GntR family transcriptional regulator compare
AO353_07520 -1.1 -7.1 8-amino-7-oxononanoate synthase compare
AO353_07295 -1.0 -7.6 aminoglycoside phosphotransferase compare
AO353_13640 -1.0 -3.2 histidine kinase compare
AO353_01975 -1.0 -5.1 glycosyl transferase compare
AO353_24425 -1.0 -2.5 amino acid ABC transporter permease compare
AO353_28990 -1.0 -4.6 LOG family protein compare
AO353_07510 -1.0 -5.9 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_03605 -1.0 -1.2 FmdB family transcriptional regulator compare
AO353_09045 -1.0 -1.5 hypothetical protein compare
AO353_21445 -1.0 -2.6 cation:proton antiporter compare
AO353_12930 -1.0 -2.9 GlcNAc-PI de-N-acetylase compare
AO353_19145 -1.0 -2.7 protease HtpX compare
AO353_07325 -1.0 -1.7 diadenosine tetraphosphatase compare
AO353_08115 -1.0 -3.7 energy transducer TonB compare
AO353_05690 -1.0 -2.3 SsrA-binding protein compare
AO353_20495 -1.0 -2.0 NUDIX hydrolase compare
AO353_16940 -1.0 -3.6 deoxycytidine triphosphate deaminase compare
AO353_13390 -1.0 -5.7 N-acylglucosamine 2-epimerase compare
AO353_08110 -1.0 -3.9 glutathione synthetase compare
AO353_11750 -1.0 -2.0 ATPase compare
AO353_11340 -1.0 -1.2 MarR family transcriptional regulator compare
AO353_21410 -1.0 -2.1 hypothetical protein compare
AO353_18505 -1.0 -1.7 translation initiation factor 2 compare
AO353_19775 -1.0 -3.6 transcriptional regulator compare
AO353_22685 -1.0 -2.8 peroxidase compare
AO353_09285 -0.9 -5.9 reactive intermediate/imine deaminase compare
AO353_02640 -0.9 -1.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_16810 -0.9 -2.4 recombinase RecX compare
AO353_13245 -0.9 -4.9 hypothetical protein compare
AO353_05420 -0.9 -1.4 peptide chain release factor 3 compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Arginine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Arginine across organisms