Experiment set2IT021 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS07720 -5.1 -3.5 UPF0058 family protein compare
MMJJ_RS02035 -4.9 -7.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS04485 -4.3 -10.0 riboflavin synthase compare
MMJJ_RS08080 -4.2 -10.9 TIGR00300 family protein compare
MMJJ_RS00275 -4.0 -2.7 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS04200 -4.0 -7.6 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS01750 -3.9 -3.7 ferrous iron transport protein A compare
MMJJ_RS01755 -3.8 -2.6 ferrous iron transport protein B compare
MMJJ_RS05590 -3.5 -3.3 homoserine dehydrogenase compare
MMJJ_RS05445 -3.4 -2.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS08870 -3.4 -2.1 2-isopropylmalate synthase compare
MMJJ_RS06625 -3.4 -3.2 pyruvate synthase subunit PorB compare
MMJJ_RS07380 -3.4 -10.1 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS08625 -3.4 -8.3 magnesium/cobalt transporter CorA compare
MMJJ_RS06510 -3.3 -4.5 LL-diaminopimelate aminotransferase compare
MMJJ_RS00580 -3.1 -2.6 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03895 -3.1 -5.0 hydrogenase expression/formation protein HypE compare
MMJJ_RS04800 -3.0 -6.9 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08020 -3.0 -10.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06390 -3.0 -2.5 NADPH-dependent F420 reductase compare
MMJJ_RS06490 -3.0 -3.5 methanogenesis marker 2 protein compare
MMJJ_RS03270 -3.0 -2.7 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS07665 -2.9 -21.5 formate dehydrogenase subunit alpha compare
MMJJ_RS07670 -2.9 -17.7 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS00570 -2.9 -2.9 ribonuclease P compare
MMJJ_RS06840 -2.9 -4.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07000 -2.9 -2.2 TrkH family potassium uptake protein compare
MMJJ_RS00270 -2.8 -3.8 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS05575 -2.8 -5.6 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS02045 -2.8 -4.4 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03005 -2.7 -4.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03200 -2.7 -3.6 uroporphyrinogen-III synthase compare
MMJJ_RS08660 -2.7 -4.0 acetylornithine transaminase compare
MMJJ_RS04995 -2.7 -6.2 Tfx family DNA-binding protein compare
MMJJ_RS08840 -2.6 -4.9 calcium/sodium antiporter compare
MMJJ_RS00210 -2.6 -2.5 DUF530 family protein compare
MMJJ_RS03820 -2.5 -3.4 hydrogenase formation protein HypD compare
MMJJ_RS00475 -2.5 -3.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS04980 -2.5 -6.1 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS08005 -2.5 -16.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS08055 -2.5 -8.1 methanogenesis marker 14 protein compare
MMJJ_RS04975 -2.5 -2.6 glycosyltransferase family 4 protein compare
MMJJ_RS07360 -2.5 -2.0 TIGR00269 family protein compare
MMJJ_RS03125 -2.5 -3.8 GMC oxidoreductase compare
MMJJ_RS07245 -2.5 -6.4 amidohydrolase family protein compare
MMJJ_RS07655 -2.4 -14.0 hypothetical protein compare
MMJJ_RS02200 -2.4 -10.2 chorismate pyruvate-lyase family protein compare
MMJJ_RS06485 -2.4 -3.2 phosphoglycerate kinase compare
MMJJ_RS06040 -2.4 -4.4 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01935 -2.4 -4.9 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS03110 -2.4 -4.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08065 -2.4 -3.5 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS06240 -2.4 -2.9 dihydropteroate synthase-like protein compare
MMJJ_RS01880 -2.3 -3.7 RlmE family RNA methyltransferase compare
MMJJ_RS03620 -2.3 -6.5 DUF2097 domain-containing protein compare
MMJJ_RS03865 -2.3 -3.0 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS02920 -2.3 -2.1 30S ribosomal protein S27ae compare
MMJJ_RS00450 -2.3 -2.1 DUF126 domain-containing protein compare
MMJJ_RS03840 -2.3 -4.2 DHH family phosphoesterase compare
MMJJ_RS07950 -2.2 -3.6 4Fe-4S binding protein compare
MMJJ_RS05415 -2.2 -2.9 hypothetical protein compare
MMJJ_RS05995 -2.2 -2.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS05650 -2.2 -3.0 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS05595 -2.2 -4.8 hypothetical protein compare
MMJJ_RS05930 -2.2 -2.0 cell division protein SepF compare
MMJJ_RS00215 -2.2 -2.9 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04475 -2.2 -3.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS05260 -2.2 -5.6 ATP-grasp domain-containing protein compare
MMJJ_RS07170 -2.2 -5.5 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS04520 -2.2 -4.5 coenzyme F430 synthase compare
MMJJ_RS06180 -2.2 -3.5 tryptophan--tRNA ligase compare
MMJJ_RS04685 -2.1 -9.2 carbamoyltransferase HypF compare
MMJJ_RS00045 -2.1 -13.6 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS05610 -2.1 -4.8 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS01870 -2.1 -2.4 methanogenesis marker 15 protein compare
MMJJ_RS07660 -2.1 -10.8 carbonic anhydrase compare
MMJJ_RS05190 -2.1 -8.0 gamma carbonic anhydrase family protein compare
MMJJ_RS08095 -2.1 -4.2 cobyric acid synthase CobQ compare
MMJJ_RS06805 -2.1 -3.6 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS04730 -2.1 -3.0 tyrosine decarboxylase MfnA compare
MMJJ_RS01415 -2.1 -3.0 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS07980 -2.0 -10.1 biotin synthase BioB compare
MMJJ_RS01690 -2.0 -3.5 methanogenesis marker 12 protein compare
MMJJ_RS03815 -2.0 -2.2 nascent polypeptide-associated complex protein compare
MMJJ_RS04150 -2.0 -3.9 DUF5379 domain-containing protein compare
MMJJ_RS07350 -2.0 -4.2 4Fe-4S binding protein compare
MMJJ_RS00040 -2.0 -9.4 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS05070 -2.0 -2.4 DNA primase catalytic subunit PriS compare
MMJJ_RS00645 -2.0 -11.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS00050 -2.0 -9.1 AAA family ATPase compare
MMJJ_RS01810 -2.0 -2.4 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06705 -2.0 -4.7 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS00035 -2.0 -13.1 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS07640 -1.9 -16.4 cache domain-containing protein compare
MMJJ_RS03225 -1.9 -3.3 4Fe-4S binding protein compare
MMJJ_RS06750 -1.9 -3.3 homoaconitase large subunit compare
MMJJ_RS00600 -1.9 -3.9 hydroxymethylbilane synthase compare
MMJJ_RS03230 -1.9 -4.3 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS00055 -1.9 -8.8 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS06915 -1.9 -11.2 helix-turn-helix domain-containing protein compare
MMJJ_RS07650 -1.9 -14.7 formate/nitrite transporter family protein compare
MMJJ_RS09190 -1.9 -1.8 tryptophan synthase subunit beta compare
MMJJ_RS04670 -1.9 -3.8 DUF2117 domain-containing protein compare
MMJJ_RS08850 -1.9 -2.8 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS03875 -1.9 -3.9 CBS domain-containing protein compare
MMJJ_RS03060 -1.9 -3.2 methanogenesis marker 7 protein compare
MMJJ_RS00370 -1.8 -1.7 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS07705 -1.8 -3.1 GTP-binding protein EngB compare
MMJJ_RS05810 -1.8 -5.8 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS05620 -1.8 -4.1 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03670 -1.8 -4.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS01600 -1.8 -3.1 radical SAM protein compare
MMJJ_RS07635 -1.8 -10.4 response regulator transcription factor compare
MMJJ_RS00065 -1.8 -9.1 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS04145 -1.8 -7.2 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS06220 -1.8 -5.2 polyamine aminopropyltransferase compare
MMJJ_RS06725 -1.8 -9.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS02935 -1.8 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS04675 -1.8 -6.6 thiamine pyrophosphate-binding protein compare
MMJJ_RS00070 -1.8 -3.9 CooT family nickel-binding protein compare
MMJJ_RS01960 -1.8 -5.5 glycosyltransferase family 2 protein compare
MMJJ_RS06860 -1.7 -2.5 hypothetical protein compare
MMJJ_RS02090 -1.7 -5.1 tyramine--L-glutamate ligase compare
MMJJ_RS06270 -1.7 -8.3 dethiobiotin synthase compare
MMJJ_RS00560 -1.7 -3.4 homoisocitrate dehydrogenase compare
MMJJ_RS00080 -1.7 -10.9 DUF166 domain-containing protein compare
MMJJ_RS00060 -1.7 -11.7 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS05950 -1.7 -3.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS05065 -1.7 -2.8 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS07425 -1.7 -8.0 MBL fold metallo-hydrolase compare
MMJJ_RS04155 -1.7 -5.5 hypothetical protein compare
MMJJ_RS00345 -1.7 -9.3 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS08330 -1.7 -2.3 SufD family Fe-S cluster assembly protein compare
MMJJ_RS05720 -1.6 -3.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS06865 -1.6 -2.3 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03760 -1.6 -2.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03650 -1.6 -6.6 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS07725 -1.6 -4.7 DNA primase DnaG compare
MMJJ_RS05535 -1.6 -10.2 hypothetical protein compare
MMJJ_RS07345 -1.6 -6.3 homocysteine biosynthesis protein compare
MMJJ_RS01875 -1.6 -4.5 global nitrogen regulator NrpR compare
MMJJ_RS00205 -1.6 -4.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS03150 -1.6 -4.7 2-phospho-L-lactate transferase compare
MMJJ_RS06910 -1.6 -3.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS08430 -1.6 -4.8 small nuclear ribonucleoprotein compare
MMJJ_RS01830 -1.6 -3.0 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06760 -1.6 -4.1 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS01820 -1.6 -4.4 MJ1244 family protein compare
MMJJ_RS05330 -1.6 -2.3 DNA polymerase II large subunit compare
MMJJ_RS03170 -1.6 -7.9 DUF5612 domain-containing protein compare
MMJJ_RS06695 -1.5 -2.5 amidohydrolase compare
MMJJ_RS03295 -1.5 -10.9 PHP domain-containing protein compare
MMJJ_RS06175 -1.5 -2.4 DUF1743 domain-containing protein compare
MMJJ_RS00075 -1.5 -8.3 AAA family ATPase compare
MMJJ_RS03580 -1.5 -2.9 TIGR00303 family protein compare
MMJJ_RS04985 -1.5 -3.3 glutamyl-tRNA reductase compare
MMJJ_RS08155 -1.5 -4.0 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06150 -1.5 -4.4 DUF483 domain-containing protein compare
MMJJ_RS00520 -1.5 -5.8 PDGLE domain-containing protein compare
MMJJ_RS08620 -1.5 -3.3 DUF373 family protein compare
MMJJ_RS02190 -1.5 -11.1 molybdopterin biosynthesis protein compare
MMJJ_RS07410 -1.5 -3.3 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS08340 -1.5 -4.7 archaeoflavoprotein AfpA compare
MMJJ_RS06905 -1.5 -2.1 hypothetical protein compare
MMJJ_RS07960 -1.4 -3.1 quinolinate synthase NadA compare
MMJJ_RS00355 -1.4 -2.9 ribonuclease P protein component 4 compare
MMJJ_RS08170 -1.4 -2.9 diaminopimelate decarboxylase compare
MMJJ_RS06255 -1.4 -5.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03810 -1.4 -2.4 AIR synthase-related protein compare
MMJJ_RS04615 -1.4 -3.1 methanogenesis marker 3 protein compare
MMJJ_RS06375 -1.4 -4.1 UbiX family flavin prenyltransferase compare
MMJJ_RS04790 -1.4 -3.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS05155 -1.4 -4.5 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06215 -1.4 -3.9 agmatinase compare
MMJJ_RS07275 -1.4 -2.0 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS08010 -1.4 -4.2 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS03055 -1.4 -2.2 hypothetical protein compare
MMJJ_RS05655 -1.4 -4.9 HisA/HisF family protein compare
MMJJ_RS00530 -1.4 -9.5 cobalt ECF transporter T component CbiQ compare
MMJJ_RS03500 -1.4 -9.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS03785 -1.3 -2.5 hypothetical protein compare
MMJJ_RS06185 -1.3 -4.9 cobalamin biosynthesis protein compare
MMJJ_RS01815 -1.3 -4.9 DUF134 domain-containing protein compare
MMJJ_RS03660 -1.3 -2.9 DUF447 family protein compare
MMJJ_RS05540 -1.3 -10.4 LysR family transcriptional regulator compare
MMJJ_RS06260 -1.3 -5.2 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS01345 -1.3 -3.9 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS05195 -1.3 -4.0 hypothetical protein compare
MMJJ_RS00515 -1.3 -9.1 cobalt transporter CbiM compare
MMJJ_RS00125 -1.3 -2.3 KEOPS complex subunit Cgi121 compare
MMJJ_RS03615 -1.3 -2.2 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06050 -1.3 -9.1 molybdopterin molybdotransferase MoeA compare
MMJJ_RS07945 -1.3 -2.5 4Fe-4S binding protein compare
MMJJ_RS04650 -1.3 -4.7 nitrogenase iron protein compare
MMJJ_RS07785 -1.3 -2.1 fumarate reductase subunit A compare
MMJJ_RS04655 -1.3 -4.9 FAD-dependent oxidoreductase compare
MMJJ_RS02055 -1.3 -8.1 GTP 3',8-cyclase MoaA compare
MMJJ_RS07015 -1.3 -1.5 PFL family protein compare
MMJJ_RS06170 -1.3 -6.4 hypothetical protein compare
MMJJ_RS06265 -1.2 -8.4 8-amino-7-oxononanoate synthase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms